FFCP PHASE1:Mm9::chr10:115910684..115910700,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=58802|HGNC=|MCL_coexpression_id=60|UniProt=Q9JIN6|association_with_transcript=-105bp_to_NM_021452,uc007hbw.1,uc007hby.1_5end|description=CAGE_peak_3_at_Kcnmb4_5end|id=chr10:115910684..115910700,-|ontology_enrichment_celltype=CL:0000540!4.86e-15!33;CL:0000047!4.86e-15!33;CL:0000031!4.86e-15!33;CL:0000404!4.86e-15!33;CL:0000117!6.20e-12!23;CL:0000337!6.20e-12!23;CL:0000221!1.36e-11!44;CL:0000133!1.36e-11!44;CL:0002319!5.15e-11!43;CL:0000393!2.14e-10!39;CL:0000211!2.14e-10!39;CL:0000055!2.21e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.97e-17,33;CL:0000047,4.97e-17,33;CL:0000031,4.97e-17,33;CL:0000404,4.97e-17,33;CL:0000117,1.42e-14,23;CL:0000337,1.42e-14,23;CL:0000221,5.57e-13,44;CL:0000133,5.57e-13,44;CL:0000393,1.15e-12,39;CL:0000211,1.15e-12,39;CL:0002319,3.00e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.98e-23!75;UBERON:0001016!3.98e-23!75;UBERON:0001017!5.38e-23!73;UBERON:0005743!5.38e-23!73;UBERON:0004121!2.18e-20!102;UBERON:0000924!2.18e-20!102;UBERON:0006601!2.18e-20!102;UBERON:0002346!4.29e-18!71;UBERON:0003075!4.29e-18!71;UBERON:0007284!4.29e-18!71;UBERON:0000153!6.82e-17!94;UBERON:0001049!6.85e-17!52;UBERON:0005068!6.85e-17!52;UBERON:0006241!6.85e-17!52;UBERON:0007135!6.85e-17!52;UBERON:0003056!7.50e-16!49;UBERON:0000033!2.20e-15!63;UBERON:0002780!3.33e-15!39;UBERON:0001890!3.33e-15!39;UBERON:0006240!3.33e-15!39;UBERON:0003080!5.65e-15!40;UBERON:0007811!6.90e-15!86;UBERON:0002020!7.73e-15!34;UBERON:0000955!1.43e-14!50;UBERON:0006238!1.43e-14!50;UBERON:0002616!1.74e-14!49;UBERON:0002791!2.44e-11!29;UBERON:0003528!2.44e-11!29;UBERON:0001893!2.44e-11!29;UBERON:0000956!5.89e-09!21;UBERON:0001869!5.89e-09!21;UBERON:0000203!5.89e-09!21;UBERON:0002619!4.35e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.83e-25,73;UBERON:0001016,1.63e-24,75;UBERON:0002346,8.37e-24,64;UBERON:0003075,8.37e-24,64;UBERON:0007284,8.37e-24,64;UBERON:0004121,1.78e-22,95;UBERON:0000924,1.78e-22,95;UBERON:0006601,1.78e-22,95;UBERON:0000073,9.17e-22,54;UBERON:0010371,6.00e-21,73;UBERON:0001049,6.21e-20,52;UBERON:0005068,6.21e-20,52;UBERON:0006241,6.21e-20,52;UBERON:0007135,6.21e-20,52;UBERON:0003056,1.59e-19,49;UBERON:0002020,1.14e-18,34;UBERON:0002780,2.16e-18,39;UBERON:0001890,2.16e-18,39;UBERON:0006240,2.16e-18,39;UBERON:0003080,1.34e-17,40;UBERON:0002616,3.44e-16,46;UBERON:0000955,1.49e-15,47;UBERON:0006238,1.49e-15,47;UBERON:0010314,3.57e-15,92;UBERON:0003528,4.74e-14,29;UBERON:0002791,4.74e-14,29;UBERON:0001893,4.74e-14,29;UBERON:0000956,3.79e-12,21;UBERON:0001869,3.79e-12,21;UBERON:0000203,3.79e-12,21;UBERON:0002619,1.22e-09,17;UBERON:0002021,1.90e-08,10;UBERON:0000411,1.90e-08,10;UBERON:0001950,1.90e-08,10|phase1_expression=2.7225304007815,0,0,0,0,0,0,0.387369970324729,0.281577444303333,0.234064526321993,0,0,1.19840510951844,1.22388563386596,0,0,0,0,0,0,4.76242424845991,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0.419959264876088,0,0,1.45072428402269,0.672187598284928,0,0,0,4.45096213891115,5.81890077199236,4.43681982454325,0.677689064138264,0,0,0,0,0.898800331555214,1.92109152660777,2.48855069540346,2.97013064329719,2.3135745748652,9.71213346972932,8.61387309711293,3.79721477566358,2.77951865952885,2.75765635983006,1.10115880999389,1.65993539510744,1.84327839907492,4.74790635828698,5.76372154695181,4.68822033501084,1.3959149950069,1.12552522006336,0.763991238884051,13.8475435172624,10.6778760599327,12.4887628702951,0.454357159999104,1.36028808192214,0,0,0,0,0,0,0.702222100658759,0,0,0,5.21120653173718,0,0,0,0,0,0,1.02765491747154,0,0.148442139064825,1.21439728736295,0.608930956624282,0.461230994512117,0.753613202763113,0.587943535678524,0,0,0,0,0.161766849947409,0.220841518460394,0,0,3.51336956413857,3.97948742945565,0.255457055208591,0,0,0,0.449371918214468,0.457500602818626,5.02617408451458,4.69325664519146,3.06858548796397,0.83115217823824,1.78465389374533,0.611036183101898,0.622034853050465,1.0108910337347,0,1.30120442962704,4.13823787980251,2.34080768746954,1.50704817835715,2.78949646520444,1.2811372028485,1.96773621575431,0,6.25147179505242,5.29497024469894,4.22282697993477,2.19195732427575,0.556094498451196,1.74126083261083,0.823128545631774,1.59227413454795,0,0,0,1.24275463521301,1.40715635988658,1.08037236876609,0.946978942340841,0.983821158737019,0.925602677324269,0.465067889500816,0.268273401399619,0.817357396570186,0,0.32833492815819,0.243206428637567,0,0.219550115291051,0.134206418760372,2.10289948564127,6.27718135513635,0,0,0.426576501070468,0.464473343720877,0.257734922644187,0,0,0.190225626112559,0,0.494096864172033,0,0.198956472041151,0,0,0,0,1.13800740571849,0.571242563048644,0,0,0.193952487167626,0.210407459670956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,1.32643988239339,0.162964976442026,0.339490171550376,0.469380496577004,0.335012514883631,0.238043640886014,0.390267295715598,0,0.44292937929755,0.159454768657487,0.327726629431476,0,0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| ||
|EntrezGene=58802 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q9JIN6 | |||
|association_with_transcript=-105bp_to_NM_021452,uc007hbw.1,uc007hby.1_5end | |||
|description=CAGE_peak_3_at_Kcnmb4_5end | |||
|id=chr10:115910684..115910700,- | |||
|ontology_enrichment_celltype=CL:0000540!4.86e-15!33;CL:0000047!4.86e-15!33;CL:0000031!4.86e-15!33;CL:0000404!4.86e-15!33;CL:0000117!6.20e-12!23;CL:0000337!6.20e-12!23;CL:0000221!1.36e-11!44;CL:0000133!1.36e-11!44;CL:0002319!5.15e-11!43;CL:0000393!2.14e-10!39;CL:0000211!2.14e-10!39;CL:0000055!2.21e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.97e-17,33;CL:0000047,4.97e-17,33;CL:0000031,4.97e-17,33;CL:0000404,4.97e-17,33;CL:0000117,1.42e-14,23;CL:0000337,1.42e-14,23;CL:0000221,5.57e-13,44;CL:0000133,5.57e-13,44;CL:0000393,1.15e-12,39;CL:0000211,1.15e-12,39;CL:0002319,3.00e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.98e-23!75;UBERON:0001016!3.98e-23!75;UBERON:0001017!5.38e-23!73;UBERON:0005743!5.38e-23!73;UBERON:0004121!2.18e-20!102;UBERON:0000924!2.18e-20!102;UBERON:0006601!2.18e-20!102;UBERON:0002346!4.29e-18!71;UBERON:0003075!4.29e-18!71;UBERON:0007284!4.29e-18!71;UBERON:0000153!6.82e-17!94;UBERON:0001049!6.85e-17!52;UBERON:0005068!6.85e-17!52;UBERON:0006241!6.85e-17!52;UBERON:0007135!6.85e-17!52;UBERON:0003056!7.50e-16!49;UBERON:0000033!2.20e-15!63;UBERON:0002780!3.33e-15!39;UBERON:0001890!3.33e-15!39;UBERON:0006240!3.33e-15!39;UBERON:0003080!5.65e-15!40;UBERON:0007811!6.90e-15!86;UBERON:0002020!7.73e-15!34;UBERON:0000955!1.43e-14!50;UBERON:0006238!1.43e-14!50;UBERON:0002616!1.74e-14!49;UBERON:0002791!2.44e-11!29;UBERON:0003528!2.44e-11!29;UBERON:0001893!2.44e-11!29;UBERON:0000956!5.89e-09!21;UBERON:0001869!5.89e-09!21;UBERON:0000203!5.89e-09!21;UBERON:0002619!4.35e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.83e-25,73;UBERON:0001016,1.63e-24,75;UBERON:0002346,8.37e-24,64;UBERON:0003075,8.37e-24,64;UBERON:0007284,8.37e-24,64;UBERON:0004121,1.78e-22,95;UBERON:0000924,1.78e-22,95;UBERON:0006601,1.78e-22,95;UBERON:0000073,9.17e-22,54;UBERON:0010371,6.00e-21,73;UBERON:0001049,6.21e-20,52;UBERON:0005068,6.21e-20,52;UBERON:0006241,6.21e-20,52;UBERON:0007135,6.21e-20,52;UBERON:0003056,1.59e-19,49;UBERON:0002020,1.14e-18,34;UBERON:0002780,2.16e-18,39;UBERON:0001890,2.16e-18,39;UBERON:0006240,2.16e-18,39;UBERON:0003080,1.34e-17,40;UBERON:0002616,3.44e-16,46;UBERON:0000955,1.49e-15,47;UBERON:0006238,1.49e-15,47;UBERON:0010314,3.57e-15,92;UBERON:0003528,4.74e-14,29;UBERON:0002791,4.74e-14,29;UBERON:0001893,4.74e-14,29;UBERON:0000956,3.79e-12,21;UBERON:0001869,3.79e-12,21;UBERON:0000203,3.79e-12,21;UBERON:0002619,1.22e-09,17;UBERON:0002021,1.90e-08,10;UBERON:0000411,1.90e-08,10;UBERON:0001950,1.90e-08,10 | |||
|phase1_expression=2.7225304007815,0,0,0,0,0,0,0.387369970324729,0.281577444303333,0.234064526321993,0,0,1.19840510951844,1.22388563386596,0,0,0,0,0,0,4.76242424845991,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0.419959264876088,0,0,1.45072428402269,0.672187598284928,0,0,0,4.45096213891115,5.81890077199236,4.43681982454325,0.677689064138264,0,0,0,0,0.898800331555214,1.92109152660777,2.48855069540346,2.97013064329719,2.3135745748652,9.71213346972932,8.61387309711293,3.79721477566358,2.77951865952885,2.75765635983006,1.10115880999389,1.65993539510744,1.84327839907492,4.74790635828698,5.76372154695181,4.68822033501084,1.3959149950069,1.12552522006336,0.763991238884051,13.8475435172624,10.6778760599327,12.4887628702951,0.454357159999104,1.36028808192214,0,0,0,0,0,0,0.702222100658759,0,0,0,5.21120653173718,0,0,0,0,0,0,1.02765491747154,0,0.148442139064825,1.21439728736295,0.608930956624282,0.461230994512117,0.753613202763113,0.587943535678524,0,0,0,0,0.161766849947409,0.220841518460394,0,0,3.51336956413857,3.97948742945565,0.255457055208591,0,0,0,0.449371918214468,0.457500602818626,5.02617408451458,4.69325664519146,3.06858548796397,0.83115217823824,1.78465389374533,0.611036183101898,0.622034853050465,1.0108910337347,0,1.30120442962704,4.13823787980251,2.34080768746954,1.50704817835715,2.78949646520444,1.2811372028485,1.96773621575431,0,6.25147179505242,5.29497024469894,4.22282697993477,2.19195732427575,0.556094498451196,1.74126083261083,0.823128545631774,1.59227413454795,0,0,0,1.24275463521301,1.40715635988658,1.08037236876609,0.946978942340841,0.983821158737019,0.925602677324269,0.465067889500816,0.268273401399619,0.817357396570186,0,0.32833492815819,0.243206428637567,0,0.219550115291051,0.134206418760372,2.10289948564127,6.27718135513635,0,0,0.426576501070468,0.464473343720877,0.257734922644187,0,0,0.190225626112559,0,0.494096864172033,0,0.198956472041151,0,0,0,0,1.13800740571849,0.571242563048644,0,0,0.193952487167626,0.210407459670956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,1.32643988239339,0.162964976442026,0.339490171550376,0.469380496577004,0.335012514883631,0.238043640886014,0.390267295715598,0,0.44292937929755,0.159454768657487,0.327726629431476,0,0.144649058581512,0,0,0,0,0.160550589987792,0.234423373184406,0,0,1.26203287766503,3.12350995437311,3.01592756825919,0.955875191810208,2.89638276307112,3.39691836946599,0.809621403349789,2.04579100537918,1.58115111178609,0.963963949265421,0.283880170416537,0,0.162886959353576,0.164970122972535,0,0.242780636154981,0,0,0.295301892880773,0,0,0,0,0.316036757935816,0,0,3.74483566329167,1.44048875225048,2.32845630808958,1.28602221018955,2.30542303734956,3.74574516964348,3.9491764944509,10.656273219011,0,0,0,0.16488625294148,0.807322133479528,0.361877549568935,0.238744688006273,0.820704498725306,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,2.68885594543965,0.406638934253697,0.86404272657441,0.209088296014469,0.655087691238533,0,0.165306911450672,0.26175594198403,0.129614973291793,0,39.4585057078933,1.64468200648377,1.82004339502807,1.94451188344048,2.0665571756437,2.36538575687089,1.64300134104056,2.3436789271911,0.943734099831398,4.83168241652012,11.2331702440568,1.89606672376907,2.02725215290164,0.924398614483445,0.77952493786677,1.25318686967237,0.198681354781265,1.44234539423963,1.47689527174577,0.908698049533329,1.06689529317,1.00826185136841,1.46186821109629,1.44317762460494,0.935015217452552,0,0,0,0,0,0,0,0,0,4.51801474093653,3.22227665555024,6.87474616127276,4.29632955859219,3.42541259885321,2.2661816921691,3.37511250115903,4.05289082901798,5.43770890781046,2.07104124700728,1.03787347584177,2.79317411380722,2.56100408631201,0.729320151204882,1.46729213839588,2.20612210140017,0.888986911206461,0.824140228955577,1.60459604795908,1.26348605881899,0.50695859978048,1.69763707247469,0.842773567228942,1.08842759088278,1.09127391015665,1.90517476513229,1.15884325944855,0.77163688185482,0.412085900803307,1.47198920134397,0.685738504770831,1.59728225543404,0.715308569841963,1.16277133305863,1.31753132581463,2.11536519729191,0.548783918618318,0.789209134313529,1.08643291076689,1.12228454331548,1.06771516311757,1.47756723563345,0.818462086339379,0.929621047115796,0.771626443924566,1.99848462350357,1.16965804222704,1.07435527024149,0.956441660344217,0.661774257358546,0.927471342481686 | |||
|short_description=p3@Kcnmb4 | |||
}} |
Revision as of 15:47, 12 September 2013
Short description: | p3@Kcnmb4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Kcnmb4_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -105bp_to_NM_021452, uc007hbw.1, uc007hby.1_5end |
EntrezGene: | Kcnmb4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.97e-17 | 33 |
neuronal stem cell | 4.97e-17 | 33 |
neuroblast | 4.97e-17 | 33 |
electrically signaling cell | 4.97e-17 | 33 |
CNS neuron (sensu Vertebrata) | 1.42e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.42e-14 | 23 |
ectodermal cell | 5.57e-13 | 44 |
neurectodermal cell | 5.57e-13 | 44 |
electrically responsive cell | 1.15e-12 | 39 |
electrically active cell | 1.15e-12 | 39 |
neural cell | 3.00e-12 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.83e-25 | 73 |
nervous system | 1.63e-24 | 75 |
neurectoderm | 8.37e-24 | 64 |
neural plate | 8.37e-24 | 64 |
presumptive neural plate | 8.37e-24 | 64 |
ectoderm-derived structure | 1.78e-22 | 95 |
ectoderm | 1.78e-22 | 95 |
presumptive ectoderm | 1.78e-22 | 95 |
regional part of nervous system | 9.17e-22 | 54 |
ecto-epithelium | 6.00e-21 | 73 |
neural tube | 6.21e-20 | 52 |
neural rod | 6.21e-20 | 52 |
future spinal cord | 6.21e-20 | 52 |
neural keel | 6.21e-20 | 52 |
pre-chordal neural plate | 1.59e-19 | 49 |
gray matter | 1.14e-18 | 34 |
regional part of forebrain | 2.16e-18 | 39 |
forebrain | 2.16e-18 | 39 |
future forebrain | 2.16e-18 | 39 |
anterior neural tube | 1.34e-17 | 40 |
regional part of brain | 3.44e-16 | 46 |
brain | 1.49e-15 | 47 |
future brain | 1.49e-15 | 47 |
structure with developmental contribution from neural crest | 3.57e-15 | 92 |
brain grey matter | 4.74e-14 | 29 |
regional part of telencephalon | 4.74e-14 | 29 |
telencephalon | 4.74e-14 | 29 |
cerebral cortex | 3.79e-12 | 21 |
cerebral hemisphere | 3.79e-12 | 21 |
pallium | 3.79e-12 | 21 |
regional part of cerebral cortex | 1.22e-09 | 17 |
occipital lobe | 1.90e-08 | 10 |
visual cortex | 1.90e-08 | 10 |
neocortex | 1.90e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.