FFCP PHASE1:Mm9::chr11:101888238..101888276,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13384|HGNC=|MCL_coexpression_id=367|UniProt=Q6XE40,B1AQF7|association_with_transcript=0bp_to_ENSMUST00000062801,ENSMUST00000107167,ENSMUST00000132094,ENSMUST00000147838,NM_007863,uc007lqc.1,uc007lqd.1,uc007lqe.1,uc011yfo.1_5end|description=CAGE_peak_1_at_Mpp3_5end|id=chr11:101888238..101888276,-|ontology_enrichment_celltype=CL:0000117!4.15e-14!23;CL:0000337!4.15e-14!23;CL:0000540!4.01e-13!33;CL:0000047!4.01e-13!33;CL:0000031!4.01e-13!33;CL:0000404!4.01e-13!33;CL:0000393!2.49e-08!39;CL:0000211!2.49e-08!39;CL:0000221!5.01e-07!44;CL:0000133!5.01e-07!44;CL:0002319!5.47e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,1.90e-15,23;CL:0000337,1.90e-15,23;CL:0000540,3.39e-13,33;CL:0000047,3.39e-13,33;CL:0000031,3.39e-13,33;CL:0000404,3.39e-13,33;CL:0000393,6.28e-09,39;CL:0000211,6.28e-09,39;CL:0000221,2.34e-07,44;CL:0000133,2.34e-07,44;CL:0002319,2.59e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!5.13e-22!71;UBERON:0003075!5.13e-22!71;UBERON:0007284!5.13e-22!71;UBERON:0001017!1.04e-20!73;UBERON:0005743!1.04e-20!73;UBERON:0001049!1.79e-19!52;UBERON:0005068!1.79e-19!52;UBERON:0006241!1.79e-19!52;UBERON:0007135!1.79e-19!52;UBERON:0000073!2.29e-19!75;UBERON:0001016!2.29e-19!75;UBERON:0000955!4.76e-18!50;UBERON:0006238!4.76e-18!50;UBERON:0002020!9.40e-18!34;UBERON:0002616!1.69e-17!49;UBERON:0000033!3.33e-17!63;UBERON:0004121!3.34e-17!102;UBERON:0000924!3.34e-17!102;UBERON:0006601!3.34e-17!102;UBERON:0003056!4.63e-16!49;UBERON:0003080!1.83e-15!40;UBERON:0002780!5.65e-15!39;UBERON:0001890!5.65e-15!39;UBERON:0006240!5.65e-15!39;UBERON:0002791!1.30e-14!29;UBERON:0003528!1.30e-14!29;UBERON:0001893!1.30e-14!29;UBERON:0000956!5.28e-10!21;UBERON:0001869!5.28e-10!21;UBERON:0000203!5.28e-10!21;UBERON:0000468!8.13e-09!333;UBERON:0002619!5.84e-08!17;UBERON:0002021!4.74e-07!10;UBERON:0000411!4.74e-07!10;UBERON:0001950!4.74e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.43e-23,64;UBERON:0003075,3.43e-23,64;UBERON:0007284,3.43e-23,64;UBERON:0000073,7.02e-23,54;UBERON:0001017,2.43e-22,73;UBERON:0001049,1.52e-21,52;UBERON:0005068,1.52e-21,52;UBERON:0006241,1.52e-21,52;UBERON:0007135,1.52e-21,52;UBERON:0001016,6.68e-21,75;UBERON:0002020,1.37e-19,34;UBERON:0000955,1.55e-18,47;UBERON:0006238,1.55e-18,47;UBERON:0003056,5.77e-18,49;UBERON:0002616,6.19e-18,46;UBERON:0010371,6.29e-18,73;UBERON:0003080,4.87e-17,40;UBERON:0004121,1.22e-16,95;UBERON:0000924,1.22e-16,95;UBERON:0006601,1.22e-16,95;UBERON:0002780,1.69e-16,39;UBERON:0001890,1.69e-16,39;UBERON:0006240,1.69e-16,39;UBERON:0003528,4.15e-16,29;UBERON:0002791,4.15e-16,29;UBERON:0001893,4.15e-16,29;UBERON:0010314,6.30e-15,92;UBERON:0000956,5.30e-11,21;UBERON:0001869,5.30e-11,21;UBERON:0000203,5.30e-11,21;UBERON:0002619,9.73e-09,17;UBERON:0002021,1.22e-07,10;UBERON:0000411,1.22e-07,10;UBERON:0001950,1.22e-07,10|phase1_expression=1.28119077683835,0.697950815278722,0.454999239389536,0.30246421130683,0,1.34303417529512,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59233766815777,0,0,0.799962113967033,1.14704640533585,0.57423196411502,0,0.861884930743556,0.380046838912748,0.252030129759931,1.55211357458713,0,0.61506478758457,0,0.288851619751275,1.99481574430191,2.24586291888606,0,0,0,0,0,0,0,0,0.183546752161682,0,0.436050312760893,0,0.388859798148567,0.139986421625363,0,0,0,0,0.257259436035947,0,0,15.3760510253294,12.6957835025288,18.3811107016792,0.338844532069132,0,0,0,0,0,1.53687322128622,8.29516898467821,9.31540974488665,6.09942387919008,13.9968982357864,12.589506834242,10.0442455356262,14.6643570657902,16.5459381589804,3.30347642998166,7.40586560894089,6.45147439676223,10.8146755938759,15.9188499868193,13.022834263919,13.1216009530649,7.31591393041184,11.0014738399303,12.374400589894,14.0947963991112,15.8439528951505,0.151452386666368,0.0755715601067855,0.289864488701678,0,0,0,0,0,1.54488862144927,0,0,0,1.97180787687353,0,0,0,0.216491041011214,0,0.505524445014783,0.5709193985953,0.258937883647172,5.78924342352817,3.81667718885499,3.65358573974569,1.61430848079241,2.11011696773672,2.11659672844269,2.13633205260448,0.247194967734374,0.86759614151947,2.65383165584962,3.39710384889559,1.76673214768315,0.484875253135222,3.72783522436244,26.9358333250623,40.0043210013699,0,0.11981512450592,0,0,6.44099749440738,9.15001205637253,14.7015591972051,13.210648334613,14.5757810678288,4.36354893575076,6.16516799657479,3.1570202793598,1.24406970610093,2.0217820674694,0,2.08192708740326,3.67843367093557,3.78130472591233,3.16480117455002,3.46986145671772,4.09963904911519,4.12287588062807,1.29351685369508,3.23351989399263,4.16033376369202,2.46331573829528,3.28793598641362,1.39023624612799,1.74126083261083,1.02891068203972,1.59227413454795,0,0,0,0.414251545071004,1.17263029990548,0.36012412292203,1.89395788468168,0.787056926989615,0.771335564436891,0.465067889500816,1.60964040839772,0.817357396570186,0.822799249567402,1.64167464079095,0.810688095458557,0.877199924551994,0.658650345873152,0.939444931322602,15.56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| ||
|EntrezGene=13384 | |||
|HGNC= | |||
|MCL_coexpression_id=367 | |||
|UniProt=Q6XE40,B1AQF7 | |||
|association_with_transcript=0bp_to_ENSMUST00000062801,ENSMUST00000107167,ENSMUST00000132094,ENSMUST00000147838,NM_007863,uc007lqc.1,uc007lqd.1,uc007lqe.1,uc011yfo.1_5end | |||
|description=CAGE_peak_1_at_Mpp3_5end | |||
|id=chr11:101888238..101888276,- | |||
|ontology_enrichment_celltype=CL:0000117!4.15e-14!23;CL:0000337!4.15e-14!23;CL:0000540!4.01e-13!33;CL:0000047!4.01e-13!33;CL:0000031!4.01e-13!33;CL:0000404!4.01e-13!33;CL:0000393!2.49e-08!39;CL:0000211!2.49e-08!39;CL:0000221!5.01e-07!44;CL:0000133!5.01e-07!44;CL:0002319!5.47e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.90e-15,23;CL:0000337,1.90e-15,23;CL:0000540,3.39e-13,33;CL:0000047,3.39e-13,33;CL:0000031,3.39e-13,33;CL:0000404,3.39e-13,33;CL:0000393,6.28e-09,39;CL:0000211,6.28e-09,39;CL:0000221,2.34e-07,44;CL:0000133,2.34e-07,44;CL:0002319,2.59e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!5.13e-22!71;UBERON:0003075!5.13e-22!71;UBERON:0007284!5.13e-22!71;UBERON:0001017!1.04e-20!73;UBERON:0005743!1.04e-20!73;UBERON:0001049!1.79e-19!52;UBERON:0005068!1.79e-19!52;UBERON:0006241!1.79e-19!52;UBERON:0007135!1.79e-19!52;UBERON:0000073!2.29e-19!75;UBERON:0001016!2.29e-19!75;UBERON:0000955!4.76e-18!50;UBERON:0006238!4.76e-18!50;UBERON:0002020!9.40e-18!34;UBERON:0002616!1.69e-17!49;UBERON:0000033!3.33e-17!63;UBERON:0004121!3.34e-17!102;UBERON:0000924!3.34e-17!102;UBERON:0006601!3.34e-17!102;UBERON:0003056!4.63e-16!49;UBERON:0003080!1.83e-15!40;UBERON:0002780!5.65e-15!39;UBERON:0001890!5.65e-15!39;UBERON:0006240!5.65e-15!39;UBERON:0002791!1.30e-14!29;UBERON:0003528!1.30e-14!29;UBERON:0001893!1.30e-14!29;UBERON:0000956!5.28e-10!21;UBERON:0001869!5.28e-10!21;UBERON:0000203!5.28e-10!21;UBERON:0000468!8.13e-09!333;UBERON:0002619!5.84e-08!17;UBERON:0002021!4.74e-07!10;UBERON:0000411!4.74e-07!10;UBERON:0001950!4.74e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.43e-23,64;UBERON:0003075,3.43e-23,64;UBERON:0007284,3.43e-23,64;UBERON:0000073,7.02e-23,54;UBERON:0001017,2.43e-22,73;UBERON:0001049,1.52e-21,52;UBERON:0005068,1.52e-21,52;UBERON:0006241,1.52e-21,52;UBERON:0007135,1.52e-21,52;UBERON:0001016,6.68e-21,75;UBERON:0002020,1.37e-19,34;UBERON:0000955,1.55e-18,47;UBERON:0006238,1.55e-18,47;UBERON:0003056,5.77e-18,49;UBERON:0002616,6.19e-18,46;UBERON:0010371,6.29e-18,73;UBERON:0003080,4.87e-17,40;UBERON:0004121,1.22e-16,95;UBERON:0000924,1.22e-16,95;UBERON:0006601,1.22e-16,95;UBERON:0002780,1.69e-16,39;UBERON:0001890,1.69e-16,39;UBERON:0006240,1.69e-16,39;UBERON:0003528,4.15e-16,29;UBERON:0002791,4.15e-16,29;UBERON:0001893,4.15e-16,29;UBERON:0010314,6.30e-15,92;UBERON:0000956,5.30e-11,21;UBERON:0001869,5.30e-11,21;UBERON:0000203,5.30e-11,21;UBERON:0002619,9.73e-09,17;UBERON:0002021,1.22e-07,10;UBERON:0000411,1.22e-07,10;UBERON:0001950,1.22e-07,10 | |||
|phase1_expression=1.28119077683835,0.697950815278722,0.454999239389536,0.30246421130683,0,1.34303417529512,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59233766815777,0,0,0.799962113967033,1.14704640533585,0.57423196411502,0,0.861884930743556,0.380046838912748,0.252030129759931,1.55211357458713,0,0.61506478758457,0,0.288851619751275,1.99481574430191,2.24586291888606,0,0,0,0,0,0,0,0,0.183546752161682,0,0.436050312760893,0,0.388859798148567,0.139986421625363,0,0,0,0,0.257259436035947,0,0,15.3760510253294,12.6957835025288,18.3811107016792,0.338844532069132,0,0,0,0,0,1.53687322128622,8.29516898467821,9.31540974488665,6.09942387919008,13.9968982357864,12.589506834242,10.0442455356262,14.6643570657902,16.5459381589804,3.30347642998166,7.40586560894089,6.45147439676223,10.8146755938759,15.9188499868193,13.022834263919,13.1216009530649,7.31591393041184,11.0014738399303,12.374400589894,14.0947963991112,15.8439528951505,0.151452386666368,0.0755715601067855,0.289864488701678,0,0,0,0,0,1.54488862144927,0,0,0,1.97180787687353,0,0,0,0.216491041011214,0,0.505524445014783,0.5709193985953,0.258937883647172,5.78924342352817,3.81667718885499,3.65358573974569,1.61430848079241,2.11011696773672,2.11659672844269,2.13633205260448,0.247194967734374,0.86759614151947,2.65383165584962,3.39710384889559,1.76673214768315,0.484875253135222,3.72783522436244,26.9358333250623,40.0043210013699,0,0.11981512450592,0,0,6.44099749440738,9.15001205637253,14.7015591972051,13.210648334613,14.5757810678288,4.36354893575076,6.16516799657479,3.1570202793598,1.24406970610093,2.0217820674694,0,2.08192708740326,3.67843367093557,3.78130472591233,3.16480117455002,3.46986145671772,4.09963904911519,4.12287588062807,1.29351685369508,3.23351989399263,4.16033376369202,2.46331573829528,3.28793598641362,1.39023624612799,1.74126083261083,1.02891068203972,1.59227413454795,0,0,0,0.414251545071004,1.17263029990548,0.36012412292203,1.89395788468168,0.787056926989615,0.771335564436891,0.465067889500816,1.60964040839772,0.817357396570186,0.822799249567402,1.64167464079095,0.810688095458557,0.877199924551994,0.658650345873152,0.939444931322602,15.5614561937454,13.4805042216863,0,0,1.91959425481711,2.09013004674395,3.09281907173024,3.02525286935014,1.33426826306922,1.52180500890047,1.42358718463353,0.823494773620054,0.754005626400808,3.38226002469956,2.14460495831032,0.898819408654221,0.216138049874694,0.597423819763102,0.948339504765408,1.5994791765362,0,0.814605311381257,1.16371492300575,1.33258057791605,1.20149420536089,0.295220295959204,1.09899109488962,0.616985819609003,0,0.83422552858047,0.393117990226406,0,0.202860121388503,0.241177159752417,0.25462585178142,0.287696137450811,0.810676133875177,0.549122826376163,0,0.372140947668503,0.936113019343682,0.505157755894224,0,0,1.10851914099963,1.70542270593436,1.95557971730431,0.848725428875941,0.938760993154008,0.502518772325447,0.476087281772027,1.95133647857799,0.630540576424764,2.43611158613652,1.43509291791738,1.14704320301017,1.38147985492716,0.867894351489069,0,0,0,0.275936746304732,6.58257418949947,7.73597131508541,0,4.29200576247434,3.15508219416257,1.56175497718655,3.87762115919038,0.955875191810208,0.668396022247182,0.566153061577665,4.04810701674894,3.21481443702443,4.34816555741176,8.9969968598106,1.27746076687442,3.20518086601059,1.79175655288934,1.31976098378028,0,1.94224508923985,2.72091201268276,3.77210159511796,1.47650946440386,1.22974059177571,1.03371317267288,0,2.13898427030833,0.632073515871632,1.05418608574999,1.03135543248187,2.04263763452273,1.26042765821917,1.94038025674132,2.14337035031592,1.59606210278046,2.67553226403106,2.63278432963394,2.74018454203139,0.23467170806371,0,0.220528398054962,0.16488625294148,0.968786560175433,0.241251699712623,0.358117032009409,0.164140899745061,0.874442509889552,2.78137953015765,0,1.23832120777933,0.555583582109135,0.565105371014073,0,0.228778173206523,0,0.139951452323658,0.138199973804424,0.954670618015114,3.16335993581135,2.84647253977588,1.51207477150522,1.88179466413022,2.62035076495413,1.61837215661785,1.1571483801547,0.523511883968059,2.07383957266869,0,1.12738587736838,2.0932316446157,3.14371131868485,5.83353565032143,3.22899558694328,3.04121025883401,4.45957506853865,5.4685841634459,4.92838918800841,3.14059357073808,2.01621004380506,0,0.608175645870493,0.410843828659309,0.25984164595559,0.358053391334963,0.596044064343795,0,0.147689527174577,0,0,0.100826185136841,0,0.0962118416403295,0,0.453460767230423,0.887943813496259,0.448569283047378,0.671538465456314,0.19318959403219,0.375364950902364,0.183151624267265,0.428736758158132,0,5.64751842617067,9.20650473014354,4.58316410751517,7.90524638780963,12.3314853558716,15.107877947794,15.5255175053315,18.9134905354173,14.5005570874945,19.6748918465692,2.49089634202024,7.18244772121856,4.26834014385335,1.94485373654635,3.14419743941973,2.02227859295016,3.55594764482584,2.88449080134452,2.56735367673452,3.79045817645696,3.04175159868288,3.39527414494937,2.24739617927718,3.64943368707755,4.07791829584854,3.8103495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| |||
|short_description=p1@Mpp3 | |||
}} |
Revision as of 18:17, 12 September 2013
Short description: | p1@Mpp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mpp3_5end |
Coexpression cluster: | MCL_coexpression_mm9:367 |
Association with transcript: | 0bp_to_ENSMUST00000062801, ENSMUST00000107167, ENSMUST00000132094, ENSMUST00000147838, NM_007863, uc007lqc.1, uc007lqd.1, uc007lqe.1, uc011yfo.1_5end |
EntrezGene: | Mpp3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.90e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.90e-15 | 23 |
neuron | 3.39e-13 | 33 |
neuronal stem cell | 3.39e-13 | 33 |
neuroblast | 3.39e-13 | 33 |
electrically signaling cell | 3.39e-13 | 33 |
electrically responsive cell | 6.28e-09 | 39 |
electrically active cell | 6.28e-09 | 39 |
ectodermal cell | 2.34e-07 | 44 |
neurectodermal cell | 2.34e-07 | 44 |
neural cell | 2.59e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.43e-23 | 64 |
neural plate | 3.43e-23 | 64 |
presumptive neural plate | 3.43e-23 | 64 |
regional part of nervous system | 7.02e-23 | 54 |
central nervous system | 2.43e-22 | 73 |
neural tube | 1.52e-21 | 52 |
neural rod | 1.52e-21 | 52 |
future spinal cord | 1.52e-21 | 52 |
neural keel | 1.52e-21 | 52 |
nervous system | 6.68e-21 | 75 |
gray matter | 1.37e-19 | 34 |
brain | 1.55e-18 | 47 |
future brain | 1.55e-18 | 47 |
pre-chordal neural plate | 5.77e-18 | 49 |
regional part of brain | 6.19e-18 | 46 |
ecto-epithelium | 6.29e-18 | 73 |
anterior neural tube | 4.87e-17 | 40 |
ectoderm-derived structure | 1.22e-16 | 95 |
ectoderm | 1.22e-16 | 95 |
presumptive ectoderm | 1.22e-16 | 95 |
regional part of forebrain | 1.69e-16 | 39 |
forebrain | 1.69e-16 | 39 |
future forebrain | 1.69e-16 | 39 |
brain grey matter | 4.15e-16 | 29 |
regional part of telencephalon | 4.15e-16 | 29 |
telencephalon | 4.15e-16 | 29 |
structure with developmental contribution from neural crest | 6.30e-15 | 92 |
cerebral cortex | 5.30e-11 | 21 |
cerebral hemisphere | 5.30e-11 | 21 |
pallium | 5.30e-11 | 21 |
regional part of cerebral cortex | 9.73e-09 | 17 |
occipital lobe | 1.22e-07 | 10 |
visual cortex | 1.22e-07 | 10 |
neocortex | 1.22e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.