FFCP PHASE1:Mm9::chr11:68902017..68902055,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22318|HGNC=|MCL_coexpression_id=1|UniProt=P63044,Q8CHR4,Q62442|association_with_transcript=0bp_to_ENSMUST00000149559,ENSMUST00000149780,NM_009497,uc007jpe.1_5end|description=CAGE_peak_1_at_Vamp2_5end|id=chr11:68902017..68902055,+|ontology_enrichment_celltype=CL:0000117!4.13e-12!23;CL:0000337!4.13e-12!23;CL:0000540!5.47e-11!33;CL:0000047!5.47e-11!33;CL:0000031!5.47e-11!33;CL:0000404!5.47e-11!33;CL:0000221!1.33e-10!44;CL:0000133!1.33e-10!44;CL:0002319!1.36e-10!43;CL:0000393!3.24e-07!39;CL:0000211!3.24e-07!39;CL:0000055!9.39e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.13e-12,23;CL:0000337,4.13e-12,23;CL:0000540,5.47e-11,33;CL:0000047,5.47e-11,33;CL:0000031,5.47e-11,33;CL:0000404,5.47e-11,33;CL:0000221,1.33e-10,44;CL:0000133,1.33e-10,44;CL:0002319,1.36e-10,43;CL:0000393,3.24e-07,39;CL:0000211,3.24e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.30e-27!73;UBERON:0005743!1.30e-27!73;UBERON:0004121!1.70e-27!102;UBERON:0000924!1.70e-27!102;UBERON:0006601!1.70e-27!102;UBERON:0000073!2.95e-26!75;UBERON:0001016!2.95e-26!75;UBERON:0002346!3.07e-25!71;UBERON:0003075!3.07e-25!71;UBERON:0007284!3.07e-25!71;UBERON:0001049!1.40e-24!52;UBERON:0005068!1.40e-24!52;UBERON:0006241!1.40e-24!52;UBERON:0007135!1.40e-24!52;UBERON:0000033!2.16e-24!63;UBERON:0000955!8.92e-24!50;UBERON:0006238!8.92e-24!50;UBERON:0002616!5.24e-23!49;UBERON:0002020!2.15e-19!34;UBERON:0003056!9.69e-19!49;UBERON:0003080!2.32e-18!40;UBERON:0002780!9.97e-18!39;UBERON:0001890!9.97e-18!39;UBERON:0006240!9.97e-18!39;UBERON:0002791!1.12e-16!29;UBERON:0003528!1.12e-16!29;UBERON:0001893!1.12e-16!29;UBERON:0007811!9.79e-14!86;UBERON:0000153!3.17e-13!94;UBERON:0000956!2.48e-12!21;UBERON:0001869!2.48e-12!21;UBERON:0000203!2.48e-12!21;UBERON:0002619!1.18e-10!17;UBERON:0004111!3.27e-08!122;UBERON:0002021!6.52e-08!10;UBERON:0000411!6.52e-08!10;UBERON:0001950!6.52e-08!10;UBERON:0000025!2.90e-07!114;UBERON:0003076!8.25e-07!12;UBERON:0003057!8.25e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-27,73;UBERON:0004121,4.86e-27,95;UBERON:0000924,4.86e-27,95;UBERON:0006601,4.86e-27,95;UBERON:0001016,2.95e-26,75;UBERON:0000073,5.97e-26,54;UBERON:0002346,2.44e-25,64;UBERON:0003075,2.44e-25,64;UBERON:0007284,2.44e-25,64;UBERON:0010314,4.14e-25,92;UBERON:0001049,1.40e-24,52;UBERON:0005068,1.40e-24,52;UBERON:0006241,1.40e-24,52;UBERON:0007135,1.40e-24,52;UBERON:0010371,4.45e-24,73;UBERON:0000955,7.51e-22,47;UBERON:0006238,7.51e-22,47;UBERON:0002616,4.26e-21,46;UBERON:0002020,2.15e-19,34;UBERON:0003056,9.69e-19,49;UBERON:0003080,2.32e-18,40;UBERON:0002780,9.97e-18,39;UBERON:0001890,9.97e-18,39;UBERON:0006240,9.97e-18,39;UBERON:0003528,1.12e-16,29;UBERON:0002791,1.12e-16,29;UBERON:0001893,1.12e-16,29;UBERON:0000956,2.48e-12,21;UBERON:0001869,2.48e-12,21;UBERON:0000203,2.48e-12,21;UBERON:0002619,1.18e-10,17;UBERON:0004111,3.27e-08,122;UBERON:0002021,6.52e-08,10;UBERON:0000411,6.52e-08,10;UBERON:0001950,6.52e-08,10;UBERON:0000025,2.90e-07,114;UBERON:0003076,8.25e-07,12;UBERON:0003057,8.25e-07,12|phase1_expression=74.7895115979388,27.5690572035095,34.1249429542152,36.2957053568196,35.0627010962443,28.2037176811975,29.9024179962273,46.8717664092922,64.7628121897667,86.3698102128156,31.8465420899439,34.0627118910086,40.745773723627,55.3371147312254,27.6481102307,30.1688148410841,55.9649502502517,45.2688207289071,42.2312455505675,38.1950686618227,250.707619365354,24.9220287514222,19.8511839745591,39.5181284299714,32.1172993494038,22.3950466004858,26.2764817657036,26.7184328530502,34.9643091799728,23.1867719379136,25.7207392360153,40.0069324279568,36.9038872550742,31.6963362030877,14.4425809875637,11.137721239019,12.4543307320045,56.5017701494825,29.6907430919044,27.2232346866375,64.7054636834116,66.9384575259277,50.0075663622088,32.9849663096012,36.2929413765862,22.3927037637251,111.099570897422,101.817748029669,131.592023457949,143.683695415895,46.4754919796204,61.8136026769378,62.2473468474202,79.0644734792365,66.8826660293503,43.9913635621469,39.2550812716097,58.270946427351,275.555019690772,292.532011537434,273.815166314669,37.2728985276045,30.2360230677787,50.844334026399,58.3431153914515,57.5488893106341,98.2688362500368,133.323751946579,135.729702511797,151.476662808157,128.087901462992,478.465398876371,403.968561400501,146.6214866603,152.202607976959,130.529067698623,516.443481887133,835.969002443724,775.559386410773,266.146528639531,314.808981635892,245.350197532234,605.268741834994,608.909144054278,683.466562305672,402.757276342504,425.26421054692,330.299818002433,38.7718109865902,55.318381998167,44.3492667713567,19.7897491705719,27.19885334831,23.2072372404261,16.8941868536394,26.8816132258401,110.529758643689,49.0839329024806,45.7223368101049,42.4007489412408,81.6891834704747,44.9142670950112,66.2493623237279,63.9960032837998,13.4224445426953,11.1478340809043,17.1878311305026,70.45145378666,148.630345213477,142.356011363167,49.2698328015826,77.3342314912839,66.647878707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| ||
|EntrezGene=22318 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P63044,Q8CHR4,Q62442 | |||
|association_with_transcript=0bp_to_ENSMUST00000149559,ENSMUST00000149780,NM_009497,uc007jpe.1_5end | |||
|description=CAGE_peak_1_at_Vamp2_5end | |||
|id=chr11:68902017..68902055,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.13e-12!23;CL:0000337!4.13e-12!23;CL:0000540!5.47e-11!33;CL:0000047!5.47e-11!33;CL:0000031!5.47e-11!33;CL:0000404!5.47e-11!33;CL:0000221!1.33e-10!44;CL:0000133!1.33e-10!44;CL:0002319!1.36e-10!43;CL:0000393!3.24e-07!39;CL:0000211!3.24e-07!39;CL:0000055!9.39e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.13e-12,23;CL:0000337,4.13e-12,23;CL:0000540,5.47e-11,33;CL:0000047,5.47e-11,33;CL:0000031,5.47e-11,33;CL:0000404,5.47e-11,33;CL:0000221,1.33e-10,44;CL:0000133,1.33e-10,44;CL:0002319,1.36e-10,43;CL:0000393,3.24e-07,39;CL:0000211,3.24e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.30e-27!73;UBERON:0005743!1.30e-27!73;UBERON:0004121!1.70e-27!102;UBERON:0000924!1.70e-27!102;UBERON:0006601!1.70e-27!102;UBERON:0000073!2.95e-26!75;UBERON:0001016!2.95e-26!75;UBERON:0002346!3.07e-25!71;UBERON:0003075!3.07e-25!71;UBERON:0007284!3.07e-25!71;UBERON:0001049!1.40e-24!52;UBERON:0005068!1.40e-24!52;UBERON:0006241!1.40e-24!52;UBERON:0007135!1.40e-24!52;UBERON:0000033!2.16e-24!63;UBERON:0000955!8.92e-24!50;UBERON:0006238!8.92e-24!50;UBERON:0002616!5.24e-23!49;UBERON:0002020!2.15e-19!34;UBERON:0003056!9.69e-19!49;UBERON:0003080!2.32e-18!40;UBERON:0002780!9.97e-18!39;UBERON:0001890!9.97e-18!39;UBERON:0006240!9.97e-18!39;UBERON:0002791!1.12e-16!29;UBERON:0003528!1.12e-16!29;UBERON:0001893!1.12e-16!29;UBERON:0007811!9.79e-14!86;UBERON:0000153!3.17e-13!94;UBERON:0000956!2.48e-12!21;UBERON:0001869!2.48e-12!21;UBERON:0000203!2.48e-12!21;UBERON:0002619!1.18e-10!17;UBERON:0004111!3.27e-08!122;UBERON:0002021!6.52e-08!10;UBERON:0000411!6.52e-08!10;UBERON:0001950!6.52e-08!10;UBERON:0000025!2.90e-07!114;UBERON:0003076!8.25e-07!12;UBERON:0003057!8.25e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-27,73;UBERON:0004121,4.86e-27,95;UBERON:0000924,4.86e-27,95;UBERON:0006601,4.86e-27,95;UBERON:0001016,2.95e-26,75;UBERON:0000073,5.97e-26,54;UBERON:0002346,2.44e-25,64;UBERON:0003075,2.44e-25,64;UBERON:0007284,2.44e-25,64;UBERON:0010314,4.14e-25,92;UBERON:0001049,1.40e-24,52;UBERON:0005068,1.40e-24,52;UBERON:0006241,1.40e-24,52;UBERON:0007135,1.40e-24,52;UBERON:0010371,4.45e-24,73;UBERON:0000955,7.51e-22,47;UBERON:0006238,7.51e-22,47;UBERON:0002616,4.26e-21,46;UBERON:0002020,2.15e-19,34;UBERON:0003056,9.69e-19,49;UBERON:0003080,2.32e-18,40;UBERON:0002780,9.97e-18,39;UBERON:0001890,9.97e-18,39;UBERON:0006240,9.97e-18,39;UBERON:0003528,1.12e-16,29;UBERON:0002791,1.12e-16,29;UBERON:0001893,1.12e-16,29;UBERON:0000956,2.48e-12,21;UBERON:0001869,2.48e-12,21;UBERON:0000203,2.48e-12,21;UBERON:0002619,1.18e-10,17;UBERON:0004111,3.27e-08,122;UBERON:0002021,6.52e-08,10;UBERON:0000411,6.52e-08,10;UBERON:0001950,6.52e-08,10;UBERON:0000025,2.90e-07,114;UBERON:0003076,8.25e-07,12;UBERON:0003057,8.25e-07,12 | |||
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| |||
|short_description=p1@Vamp2 | |||
}} |
Revision as of 20:32, 12 September 2013
Short description: | p1@Vamp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vamp2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000149559, ENSMUST00000149780, NM_009497, uc007jpe.1_5end |
EntrezGene: | Vamp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.13e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.13e-12 | 23 |
neuron | 5.47e-11 | 33 |
neuronal stem cell | 5.47e-11 | 33 |
neuroblast | 5.47e-11 | 33 |
electrically signaling cell | 5.47e-11 | 33 |
ectodermal cell | 1.33e-10 | 44 |
neurectodermal cell | 1.33e-10 | 44 |
neural cell | 1.36e-10 | 43 |
electrically responsive cell | 3.24e-07 | 39 |
electrically active cell | 3.24e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.