FFCP PHASE1:Mm9::chr13:54864309..54864332,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=104069|HGNC=|MCL_coexpression_id=138|UniProt=|association_with_transcript=95bp_to_ENSMUST00000153829_5end|description=CAGE_peak_4_at_Sncb_5end|id=chr13:54864309..54864332,-|ontology_enrichment_celltype=CL:0000117!6.73e-23!23;CL:0000337!6.73e-23!23;CL:0000540!5.27e-16!33;CL:0000047!5.27e-16!33;CL:0000031!5.27e-16!33;CL:0000404!5.27e-16!33;CL:0000393!1.05e-12!39;CL:0000211!1.05e-12!39;CL:0002319!4.98e-11!43;CL:0000221!1.17e-10!44;CL:0000133!1.17e-10!44;CL:0000055!9.18e-09!50;CL:0002610!9.38e-07!3|ontology_enrichment_celltype_v019_2=CL:0000117,3.23e-13,23;CL:0000337,3.23e-13,23;CL:0002610,1.99e-11,3;CL:0000540,1.13e-08,33;CL:0000047,1.13e-08,33;CL:0000031,1.13e-08,33;CL:0000404,1.13e-08,33;CL:0002611,7.23e-08,2;CL:0000393,4.54e-07,39;CL:0000211,4.54e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.39e-35!52;UBERON:0005068!1.39e-35!52;UBERON:0006241!1.39e-35!52;UBERON:0007135!1.39e-35!52;UBERON:0001017!1.40e-35!73;UBERON:0005743!1.40e-35!73;UBERON:0002020!1.84e-34!34;UBERON:0000073!2.48e-34!75;UBERON:0001016!2.48e-34!75;UBERON:0000955!5.53e-33!50;UBERON:0006238!5.53e-33!50;UBERON:0002616!1.69e-31!49;UBERON:0000033!2.48e-29!63;UBERON:0002346!3.38e-28!71;UBERON:0003075!3.38e-28!71;UBERON:0007284!3.38e-28!71;UBERON:0002791!1.40e-26!29;UBERON:0003528!1.40e-26!29;UBERON:0001893!1.40e-26!29;UBERON:0004121!2.35e-26!102;UBERON:0000924!2.35e-26!102;UBERON:0006601!2.35e-26!102;UBERON:0003080!3.10e-23!40;UBERON:0003056!1.79e-22!49;UBERON:0002780!5.99e-22!39;UBERON:0001890!5.99e-22!39;UBERON:0006240!5.99e-22!39;UBERON:0007811!8.06e-19!86;UBERON:0000956!1.93e-18!21;UBERON:0001869!1.93e-18!21;UBERON:0000203!1.93e-18!21;UBERON:0002021!2.45e-18!10;UBERON:0000411!2.45e-18!10;UBERON:0001950!2.45e-18!10;UBERON:0000153!2.22e-16!94;UBERON:0002619!1.68e-13!17;UBERON:0003076!7.63e-13!12;UBERON:0003057!7.63e-13!12;UBERON:0000025!7.73e-12!114;UBERON:0002240!1.21e-10!6;UBERON:0005174!1.21e-10!6;UBERON:0001137!1.21e-10!6;UBERON:0004111!1.94e-10!122;UBERON:0002298!3.40e-10!6;UBERON:0001948!2.95e-09!5;UBERON:0002315!2.95e-09!5;UBERON:0002420!3.31e-09!8;UBERON:0007245!3.31e-09!8;UBERON:0010009!3.31e-09!8;UBERON:0010011!3.31e-09!8;UBERON:0000454!3.31e-09!8;UBERON:0002950!1.77e-07!4;UBERON:0001891!1.77e-07!4;UBERON:0009616!1.77e-07!4;UBERON:0000064!2.82e-07!99;UBERON:0000477!6.15e-07!154;UBERON:0004684!9.38e-07!3;UBERON:0002275!9.38e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.92e-33,10;UBERON:0000411,1.92e-33,10;UBERON:0001950,1.92e-33,10;UBERON:0000073,4.65e-32,54;UBERON:0001017,2.51e-29,73;UBERON:0001016,1.99e-28,75;UBERON:0001049,3.94e-27,52;UBERON:0005068,3.94e-27,52;UBERON:0006241,3.94e-27,52;UBERON:0007135,3.94e-27,52;UBERON:0002020,5.52e-26,34;UBERON:0004121,1.63e-21,95;UBERON:0000924,1.63e-21,95;UBERON:0006601,1.63e-21,95;UBERON:0002346,2.84e-21,64;UBERON:0003075,2.84e-21,64;UBERON:0007284,2.84e-21,64;UBERON:0000955,1.38e-19,47;UBERON:0006238,1.38e-19,47;UBERON:0002619,6.17e-19,17;UBERON:0010371,3.87e-18,73;UBERON:0000956,5.12e-18,21;UBERON:0001869,5.12e-18,21;UBERON:0000203,5.12e-18,21;UBERON:0002616,9.15e-18,46;UBERON:0003528,1.08e-17,29;UBERON:0002791,1.08e-17,29;UBERON:0001893,1.08e-17,29;UBERON:0003080,3.41e-16,40;UBERON:0002780,1.57e-14,39;UBERON:0001890,1.57e-14,39;UBERON:0006240,1.57e-14,39;UBERON:0002240,1.19e-13,6;UBERON:0005174,1.19e-13,6;UBERON:0001137,1.19e-13,6;UBERON:0010314,1.58e-13,92;UBERON:0003056,1.14e-12,49;UBERON:0003076,2.26e-12,12;UBERON:0003057,2.26e-12,12;UBERON:0004684,1.99e-11,3;UBERON:0002275,1.99e-11,3;UBERON:0001948,4.63e-11,5;UBERON:0002315,4.63e-11,5;UBERON:0000025,4.25e-10,114;UBERON:0004111,3.72e-09,122;UBERON:0011216,3.57e-08,194;UBERON:0002950,6.61e-08,4;UBERON:0001891,6.61e-08,4;UBERON:0009616,6.61e-08,4;UBERON:0010286,6.61e-08,4;UBERON:0002256,7.23e-08,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,1.5869729378161,0,0,0,0,0,0,0,0,0.311068836925433,0.405017814995072,0.420649922702764,2.28520787523043,3.97563373712904,0.122490799214954,0,0,3.30347642998166,4.72443150915195,3.99376986466233,0.131886287730194,0.548925861614458,0,4.74611098302348,0.56276261003168,1.5279824777681,2.06240009831567,1.85083185038834,0.559198337475902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17112318804619,0.209446706813455,0,0,0,0,1.04853447583376,0.915001205637253,0.125654352112864,1.39059456153821,0,1.24672826735736,0.973447578406546,0,0,0,0.210441855886474,0,0,0,0.150704817835715,0,0,0,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12385412991454,0.703270119553219,0,0,0,0,0,0,0,0,0,0.292255857911312,0,1.60660658210904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11255181206306,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.84130094602871,2.86447756719698,2.749650917499,4.11049511862385,6.0431511791176,2.70009000092722,5.40385443869065,3.17199686288943,4.65984280576638,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0|short_description=p4@Sncb}} | ||
|EntrezGene=104069 | |||
|HGNC= | |||
|MCL_coexpression_id=138 | |||
|UniProt= | |||
|association_with_transcript=95bp_to_ENSMUST00000153829_5end | |||
|description=CAGE_peak_4_at_Sncb_5end | |||
|id=chr13:54864309..54864332,- | |||
|ontology_enrichment_celltype=CL:0000117!6.73e-23!23;CL:0000337!6.73e-23!23;CL:0000540!5.27e-16!33;CL:0000047!5.27e-16!33;CL:0000031!5.27e-16!33;CL:0000404!5.27e-16!33;CL:0000393!1.05e-12!39;CL:0000211!1.05e-12!39;CL:0002319!4.98e-11!43;CL:0000221!1.17e-10!44;CL:0000133!1.17e-10!44;CL:0000055!9.18e-09!50;CL:0002610!9.38e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.23e-13,23;CL:0000337,3.23e-13,23;CL:0002610,1.99e-11,3;CL:0000540,1.13e-08,33;CL:0000047,1.13e-08,33;CL:0000031,1.13e-08,33;CL:0000404,1.13e-08,33;CL:0002611,7.23e-08,2;CL:0000393,4.54e-07,39;CL:0000211,4.54e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.39e-35!52;UBERON:0005068!1.39e-35!52;UBERON:0006241!1.39e-35!52;UBERON:0007135!1.39e-35!52;UBERON:0001017!1.40e-35!73;UBERON:0005743!1.40e-35!73;UBERON:0002020!1.84e-34!34;UBERON:0000073!2.48e-34!75;UBERON:0001016!2.48e-34!75;UBERON:0000955!5.53e-33!50;UBERON:0006238!5.53e-33!50;UBERON:0002616!1.69e-31!49;UBERON:0000033!2.48e-29!63;UBERON:0002346!3.38e-28!71;UBERON:0003075!3.38e-28!71;UBERON:0007284!3.38e-28!71;UBERON:0002791!1.40e-26!29;UBERON:0003528!1.40e-26!29;UBERON:0001893!1.40e-26!29;UBERON:0004121!2.35e-26!102;UBERON:0000924!2.35e-26!102;UBERON:0006601!2.35e-26!102;UBERON:0003080!3.10e-23!40;UBERON:0003056!1.79e-22!49;UBERON:0002780!5.99e-22!39;UBERON:0001890!5.99e-22!39;UBERON:0006240!5.99e-22!39;UBERON:0007811!8.06e-19!86;UBERON:0000956!1.93e-18!21;UBERON:0001869!1.93e-18!21;UBERON:0000203!1.93e-18!21;UBERON:0002021!2.45e-18!10;UBERON:0000411!2.45e-18!10;UBERON:0001950!2.45e-18!10;UBERON:0000153!2.22e-16!94;UBERON:0002619!1.68e-13!17;UBERON:0003076!7.63e-13!12;UBERON:0003057!7.63e-13!12;UBERON:0000025!7.73e-12!114;UBERON:0002240!1.21e-10!6;UBERON:0005174!1.21e-10!6;UBERON:0001137!1.21e-10!6;UBERON:0004111!1.94e-10!122;UBERON:0002298!3.40e-10!6;UBERON:0001948!2.95e-09!5;UBERON:0002315!2.95e-09!5;UBERON:0002420!3.31e-09!8;UBERON:0007245!3.31e-09!8;UBERON:0010009!3.31e-09!8;UBERON:0010011!3.31e-09!8;UBERON:0000454!3.31e-09!8;UBERON:0002950!1.77e-07!4;UBERON:0001891!1.77e-07!4;UBERON:0009616!1.77e-07!4;UBERON:0000064!2.82e-07!99;UBERON:0000477!6.15e-07!154;UBERON:0004684!9.38e-07!3;UBERON:0002275!9.38e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.92e-33,10;UBERON:0000411,1.92e-33,10;UBERON:0001950,1.92e-33,10;UBERON:0000073,4.65e-32,54;UBERON:0001017,2.51e-29,73;UBERON:0001016,1.99e-28,75;UBERON:0001049,3.94e-27,52;UBERON:0005068,3.94e-27,52;UBERON:0006241,3.94e-27,52;UBERON:0007135,3.94e-27,52;UBERON:0002020,5.52e-26,34;UBERON:0004121,1.63e-21,95;UBERON:0000924,1.63e-21,95;UBERON:0006601,1.63e-21,95;UBERON:0002346,2.84e-21,64;UBERON:0003075,2.84e-21,64;UBERON:0007284,2.84e-21,64;UBERON:0000955,1.38e-19,47;UBERON:0006238,1.38e-19,47;UBERON:0002619,6.17e-19,17;UBERON:0010371,3.87e-18,73;UBERON:0000956,5.12e-18,21;UBERON:0001869,5.12e-18,21;UBERON:0000203,5.12e-18,21;UBERON:0002616,9.15e-18,46;UBERON:0003528,1.08e-17,29;UBERON:0002791,1.08e-17,29;UBERON:0001893,1.08e-17,29;UBERON:0003080,3.41e-16,40;UBERON:0002780,1.57e-14,39;UBERON:0001890,1.57e-14,39;UBERON:0006240,1.57e-14,39;UBERON:0002240,1.19e-13,6;UBERON:0005174,1.19e-13,6;UBERON:0001137,1.19e-13,6;UBERON:0010314,1.58e-13,92;UBERON:0003056,1.14e-12,49;UBERON:0003076,2.26e-12,12;UBERON:0003057,2.26e-12,12;UBERON:0004684,1.99e-11,3;UBERON:0002275,1.99e-11,3;UBERON:0001948,4.63e-11,5;UBERON:0002315,4.63e-11,5;UBERON:0000025,4.25e-10,114;UBERON:0004111,3.72e-09,122;UBERON:0011216,3.57e-08,194;UBERON:0002950,6.61e-08,4;UBERON:0001891,6.61e-08,4;UBERON:0009616,6.61e-08,4;UBERON:0010286,6.61e-08,4;UBERON:0002256,7.23e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,1.5869729378161,0,0,0,0,0,0,0,0,0.311068836925433,0.405017814995072,0.420649922702764,2.28520787523043,3.97563373712904,0.122490799214954,0,0,3.30347642998166,4.72443150915195,3.99376986466233,0.131886287730194,0.548925861614458,0,4.74611098302348,0.56276261003168,1.5279824777681,2.06240009831567,1.85083185038834,0.559198337475902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17112318804619,0.209446706813455,0,0,0,0,1.04853447583376,0.915001205637253,0.125654352112864,1.39059456153821,0,1.24672826735736,0.973447578406546,0,0,0,0.210441855886474,0,0,0,0.150704817835715,0,0,0,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12385412991454,0.703270119553219,0,0,0,0,0,0,0,0,0,0.292255857911312,0,1.60660658210904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11255181206306,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,1.84130094602871,2.86447756719698,2.749650917499,4.11049511862385,6.0431511791176,2.70009000092722,5.40385443869065,3.17199686288943,4.65984280576638,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0 | |||
|short_description=p4@Sncb | |||
}} |
Revision as of 00:49, 13 September 2013
Short description: | p4@Sncb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sncb_5end |
Coexpression cluster: | MCL_coexpression_mm9:138 |
Association with transcript: | 95bp_to_ENSMUST00000153829_5end |
EntrezGene: | Sncb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.23e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.23e-13 | 23 |
raphe nuclei neuron | 1.99e-11 | 3 |
neuron | 1.13e-08 | 33 |
neuronal stem cell | 1.13e-08 | 33 |
neuroblast | 1.13e-08 | 33 |
electrically signaling cell | 1.13e-08 | 33 |
neuron of the dorsal spinal cord | 7.23e-08 | 2 |
electrically responsive cell | 4.54e-07 | 39 |
electrically active cell | 4.54e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.