FFCP PHASE1:Mm9::chr15:18748708..18748717,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=320873|HGNC=|MCL_coexpression_id=1303|UniProt=P70408|association_with_transcript=6bp_to_ENSMUST00000166873,uc007vii.1,uc007vij.1,uc007vik.1_5end|description=CAGE_peak_4_at_Cdh10_5end|id=chr15:18748708..18748717,+|ontology_enrichment_celltype=CL:0000540!1.31e-18!33;CL:0000047!1.31e-18!33;CL:0000031!1.31e-18!33;CL:0000404!1.31e-18!33;CL:0000393!1.61e-13!39;CL:0000211!1.61e-13!39;CL:0000221!4.28e-12!44;CL:0000133!4.28e-12!44;CL:0000117!6.99e-12!23;CL:0000337!6.99e-12!23;CL:0002319!7.91e-12!43;CL:0000055!2.31e-08!50;CL:0000107!6.78e-08!9|ontology_enrichment_celltype_v019_2=CL:0000540,3.72e-24,33;CL:0000047,3.72e-24,33;CL:0000031,3.72e-24,33;CL:0000404,3.72e-24,33;CL:0000393,3.72e-19,39;CL:0000211,3.72e-19,39;CL:0002319,1.30e-16,43;CL:0000221,4.71e-16,44;CL:0000133,4.71e-16,44;CL:0000117,2.37e-14,23;CL:0000337,2.37e-14,23;CL:0000107,1.34e-12,9;CL:0002321,2.64e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.60e-32!73;UBERON:0005743!2.60e-32!73;UBERON:0000073!8.87e-32!75;UBERON:0001016!8.87e-32!75;UBERON:0004121!1.06e-27!102;UBERON:0000924!1.06e-27!102;UBERON:0006601!1.06e-27!102;UBERON:0002346!1.19e-26!71;UBERON:0003075!1.19e-26!71;UBERON:0007284!1.19e-26!71;UBERON:0000033!1.40e-24!63;UBERON:0001049!4.88e-24!52;UBERON:0005068!4.88e-24!52;UBERON:0006241!4.88e-24!52;UBERON:0007135!4.88e-24!52;UBERON:0000955!8.58e-23!50;UBERON:0006238!8.58e-23!50;UBERON:0002616!5.44e-22!49;UBERON:0003056!3.29e-21!49;UBERON:0003080!9.93e-20!40;UBERON:0002780!5.39e-19!39;UBERON:0001890!5.39e-19!39;UBERON:0006240!5.39e-19!39;UBERON:0002020!3.96e-18!34;UBERON:0002791!5.54e-15!29;UBERON:0003528!5.54e-15!29;UBERON:0001893!5.54e-15!29;UBERON:0007811!8.05e-14!86;UBERON:0000153!1.16e-12!94;UBERON:0000956!7.93e-11!21;UBERON:0001869!7.93e-11!21;UBERON:0000203!7.93e-11!21;UBERON:0002021!9.07e-09!10;UBERON:0000411!9.07e-09!10;UBERON:0001950!9.07e-09!10;UBERON:0002619!3.28e-08!17;UBERON:0002410!6.78e-08!9;UBERON:0000010!7.12e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.64e-42,73;UBERON:0001016,8.90e-41,75;UBERON:0000073,1.58e-32,54;UBERON:0004121,6.54e-32,95;UBERON:0000924,6.54e-32,95;UBERON:0006601,6.54e-32,95;UBERON:0002346,1.04e-30,64;UBERON:0003075,1.04e-30,64;UBERON:0007284,1.04e-30,64;UBERON:0001049,2.16e-30,52;UBERON:0005068,2.16e-30,52;UBERON:0006241,2.16e-30,52;UBERON:0007135,2.16e-30,52;UBERON:0002020,9.27e-29,34;UBERON:0010371,2.45e-25,73;UBERON:0000955,3.37e-25,47;UBERON:0006238,3.37e-25,47;UBERON:0002616,5.79e-24,46;UBERON:0003528,2.57e-23,29;UBERON:0002791,2.57e-23,29;UBERON:0001893,2.57e-23,29;UBERON:0003080,3.99e-23,40;UBERON:0002780,5.76e-22,39;UBERON:0001890,5.76e-22,39;UBERON:0006240,5.76e-22,39;UBERON:0003056,4.50e-20,49;UBERON:0000956,3.14e-19,21;UBERON:0001869,3.14e-19,21;UBERON:0000203,3.14e-19,21;UBERON:0010314,1.68e-17,92;UBERON:0002619,1.37e-14,17;UBERON:0002021,4.06e-14,10;UBERON:0000411,4.06e-14,10;UBERON:0001950,4.06e-14,10;UBERON:0002410,1.34e-12,9;UBERON:0000010,6.98e-10,11;UBERON:0000025,6.32e-08,114;UBERON:0002240,1.02e-07,6;UBERON:0005174,1.02e-07,6;UBERON:0001137,1.02e-07,6;UBERON:0003076,1.28e-07,12;UBERON:0003057,1.28e-07,12;UBERON:0011216,6.08e-07,194;UBERON:0004111,9.04e-07,122|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02316460859598,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,4.35496371695606,3.10513658162888,2.52389953621658,1.99955689082663,1.32521124570968,3.1847607795888,1.43768206527355,0,1.10115880999389,2.42605942361857,6.45147439676223,0.791317726381163,1.09785172322892,1.56274011167028,0.558365998002762,2.8138130501584,3.97275444219706,2.35702868378934,6.54909731675874,2.79599168737951,0,0.529000920747499,0,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0.253359865475099,0.505524445014783,0,0,0,0.867426633830679,0.304465478312141,0.230615497256059,0.60289056221049,0,0,0,0,0,0,0,0,0,0.292780797011547,1.46612694769419,0,0,0,0,3.59497534571574,3.20250421973039,3.26701315493447,3.99795936442236,6.39288643325826,2.90903262383384,3.73154905055843,0.101839363850316,0,0,0,0.130120442962704,1.60931473103431,2.16074555766419,0.60281927134286,0.272145996605311,0.640568601424249,0.937017245597288,0.517406741478031,0,0.756424320671277,0.879755620819744,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0.414251545071004,0.234526059981096,0.36012412292203,0.710234206755631,0.196764231747404,0.617068451549513,0.232533944750408,0,0.116765342367169,0,0,0,0,0.219550115291051,0,3.57492912559016,5.14523061896422,0,0,0.213288250535234,0.232236671860439,0,0.201683524623343,0,0.380451252225118,0,0,0.251335208800269,0,0,0,0,0,0,0.342745537829186,0,0,0.193952487167626,0,0.0632365371242573,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.162964976442026,0.169745085775188,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,2.24770825982909,5.04010252346474,0,0,2.83957397474631,2.73307121007647,4.73931475012158,6.4521575447189,4.67877215573028,6.51076020814315,4.45291771842384,3.21481443702443,2.37172666767914,4.4984984299053,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.720244376125241,0.646793418913773,2.14337035031592,1.41872186913819,0.891844088010353,0.987294123612726,0.304464949114599,0,0,0,0,0,0,0,0,0,3.15223013417866,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.216010681643603,0,0,0,0.0826534557253359,0,0,0.621339313086926,0,0.299033092087958,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0.179026695667481,0,0,0,0,0,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0,0,0.183151624267265,0,0,3.95326289831947,7.36520378411483,4.58316410751517,6.8741272937475,6.16574267793578,2.2661816921691,3.37511250115903,4.5032120322422,3.62513927187364,2.5888015587591,0.207574695168353,0.798049746802062,1.02440163452481,1.45864030240976,0,0.735374033800057,0.44449345560323,0.412070114477788,1.28367683836726,0.252697211763798,0.25347929989024,1.32038438970253,1.31098110457835,0.960377286073039,1.43588672389033,1.90517476513229,1.27472758539341,1.15745532278223,0.412085900803307,1.03039244094078,1.02860775715625,0.354951612318675,0.476872379894642,0.872078499793971,1.31753132581463,0.761531471025089,0.548783918618318,1.05227884575137,0.679020569229309,0.561142271657738,1.06771516311757,0.689531376628944,1.22769312950907,0.77468420592983,0,0.499621155875892,0.233931608445408,0.859484216193193,0.382576664137687,0.441182838239031,0.231867835620421|short_description=p4@Cdh10}} | ||
|EntrezGene=320873 | |||
|HGNC= | |||
|MCL_coexpression_id=1303 | |||
|UniProt=P70408 | |||
|association_with_transcript=6bp_to_ENSMUST00000166873,uc007vii.1,uc007vij.1,uc007vik.1_5end | |||
|description=CAGE_peak_4_at_Cdh10_5end | |||
|id=chr15:18748708..18748717,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.31e-18!33;CL:0000047!1.31e-18!33;CL:0000031!1.31e-18!33;CL:0000404!1.31e-18!33;CL:0000393!1.61e-13!39;CL:0000211!1.61e-13!39;CL:0000221!4.28e-12!44;CL:0000133!4.28e-12!44;CL:0000117!6.99e-12!23;CL:0000337!6.99e-12!23;CL:0002319!7.91e-12!43;CL:0000055!2.31e-08!50;CL:0000107!6.78e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.72e-24,33;CL:0000047,3.72e-24,33;CL:0000031,3.72e-24,33;CL:0000404,3.72e-24,33;CL:0000393,3.72e-19,39;CL:0000211,3.72e-19,39;CL:0002319,1.30e-16,43;CL:0000221,4.71e-16,44;CL:0000133,4.71e-16,44;CL:0000117,2.37e-14,23;CL:0000337,2.37e-14,23;CL:0000107,1.34e-12,9;CL:0002321,2.64e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.60e-32!73;UBERON:0005743!2.60e-32!73;UBERON:0000073!8.87e-32!75;UBERON:0001016!8.87e-32!75;UBERON:0004121!1.06e-27!102;UBERON:0000924!1.06e-27!102;UBERON:0006601!1.06e-27!102;UBERON:0002346!1.19e-26!71;UBERON:0003075!1.19e-26!71;UBERON:0007284!1.19e-26!71;UBERON:0000033!1.40e-24!63;UBERON:0001049!4.88e-24!52;UBERON:0005068!4.88e-24!52;UBERON:0006241!4.88e-24!52;UBERON:0007135!4.88e-24!52;UBERON:0000955!8.58e-23!50;UBERON:0006238!8.58e-23!50;UBERON:0002616!5.44e-22!49;UBERON:0003056!3.29e-21!49;UBERON:0003080!9.93e-20!40;UBERON:0002780!5.39e-19!39;UBERON:0001890!5.39e-19!39;UBERON:0006240!5.39e-19!39;UBERON:0002020!3.96e-18!34;UBERON:0002791!5.54e-15!29;UBERON:0003528!5.54e-15!29;UBERON:0001893!5.54e-15!29;UBERON:0007811!8.05e-14!86;UBERON:0000153!1.16e-12!94;UBERON:0000956!7.93e-11!21;UBERON:0001869!7.93e-11!21;UBERON:0000203!7.93e-11!21;UBERON:0002021!9.07e-09!10;UBERON:0000411!9.07e-09!10;UBERON:0001950!9.07e-09!10;UBERON:0002619!3.28e-08!17;UBERON:0002410!6.78e-08!9;UBERON:0000010!7.12e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.64e-42,73;UBERON:0001016,8.90e-41,75;UBERON:0000073,1.58e-32,54;UBERON:0004121,6.54e-32,95;UBERON:0000924,6.54e-32,95;UBERON:0006601,6.54e-32,95;UBERON:0002346,1.04e-30,64;UBERON:0003075,1.04e-30,64;UBERON:0007284,1.04e-30,64;UBERON:0001049,2.16e-30,52;UBERON:0005068,2.16e-30,52;UBERON:0006241,2.16e-30,52;UBERON:0007135,2.16e-30,52;UBERON:0002020,9.27e-29,34;UBERON:0010371,2.45e-25,73;UBERON:0000955,3.37e-25,47;UBERON:0006238,3.37e-25,47;UBERON:0002616,5.79e-24,46;UBERON:0003528,2.57e-23,29;UBERON:0002791,2.57e-23,29;UBERON:0001893,2.57e-23,29;UBERON:0003080,3.99e-23,40;UBERON:0002780,5.76e-22,39;UBERON:0001890,5.76e-22,39;UBERON:0006240,5.76e-22,39;UBERON:0003056,4.50e-20,49;UBERON:0000956,3.14e-19,21;UBERON:0001869,3.14e-19,21;UBERON:0000203,3.14e-19,21;UBERON:0010314,1.68e-17,92;UBERON:0002619,1.37e-14,17;UBERON:0002021,4.06e-14,10;UBERON:0000411,4.06e-14,10;UBERON:0001950,4.06e-14,10;UBERON:0002410,1.34e-12,9;UBERON:0000010,6.98e-10,11;UBERON:0000025,6.32e-08,114;UBERON:0002240,1.02e-07,6;UBERON:0005174,1.02e-07,6;UBERON:0001137,1.02e-07,6;UBERON:0003076,1.28e-07,12;UBERON:0003057,1.28e-07,12;UBERON:0011216,6.08e-07,194;UBERON:0004111,9.04e-07,122 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02316460859598,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,4.35496371695606,3.10513658162888,2.52389953621658,1.99955689082663,1.32521124570968,3.1847607795888,1.43768206527355,0,1.10115880999389,2.42605942361857,6.45147439676223,0.791317726381163,1.09785172322892,1.56274011167028,0.558365998002762,2.8138130501584,3.97275444219706,2.35702868378934,6.54909731675874,2.79599168737951,0,0.529000920747499,0,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0.253359865475099,0.505524445014783,0,0,0,0.867426633830679,0.304465478312141,0.230615497256059,0.60289056221049,0,0,0,0,0,0,0,0,0,0.292780797011547,1.46612694769419,0,0,0,0,3.59497534571574,3.20250421973039,3.26701315493447,3.99795936442236,6.39288643325826,2.90903262383384,3.73154905055843,0.101839363850316,0,0,0,0.130120442962704,1.60931473103431,2.16074555766419,0.60281927134286,0.272145996605311,0.640568601424249,0.937017245597288,0.517406741478031,0,0.756424320671277,0.879755620819744,0,0,0,0.205782136407943,0.199034266818493,0,0,0,0.414251545071004,0.234526059981096,0.36012412292203,0.710234206755631,0.196764231747404,0.617068451549513,0.232533944750408,0,0.116765342367169,0,0,0,0,0.219550115291051,0,3.57492912559016,5.14523061896422,0,0,0.213288250535234,0.232236671860439,0,0.201683524623343,0,0.380451252225118,0,0,0.251335208800269,0,0,0,0,0,0,0.342745537829186,0,0,0.193952487167626,0,0.0632365371242573,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.162964976442026,0.169745085775188,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,2.24770825982909,5.04010252346474,0,0,2.83957397474631,2.73307121007647,4.73931475012158,6.4521575447189,4.67877215573028,6.51076020814315,4.45291771842384,3.21481443702443,2.37172666767914,4.4984984299053,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.720244376125241,0.646793418913773,2.14337035031592,1.41872186913819,0.891844088010353,0.987294123612726,0.304464949114599,0,0,0,0,0,0,0,0,0,3.15223013417866,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.203319467126849,0.216010681643603,0,0,0,0.0826534557253359,0,0,0.621339313086926,0,0.299033092087958,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0.179026695667481,0,0,0,0,0,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0,0,0.183151624267265,0,0,3.95326289831947,7.36520378411483,4.58316410751517,6.8741272937475,6.16574267793578,2.2661816921691,3.37511250115903,4.5032120322422,3.62513927187364,2.5888015587591,0.207574695168353,0.798049746802062,1.02440163452481,1.45864030240976,0,0.735374033800057,0.44449345560323,0.412070114477788,1.28367683836726,0.252697211763798,0.25347929989024,1.32038438970253,1.31098110457835,0.960377286073039,1.43588672389033,1.90517476513229,1.27472758539341,1.15745532278223,0.412085900803307,1.03039244094078,1.02860775715625,0.354951612318675,0.476872379894642,0.872078499793971,1.31753132581463,0.761531471025089,0.548783918618318,1.05227884575137,0.679020569229309,0.561142271657738,1.06771516311757,0.689531376628944,1.22769312950907,0.77468420592983,0,0.499621155875892,0.233931608445408,0.859484216193193,0.382576664137687,0.441182838239031,0.231867835620421 | |||
|short_description=p4@Cdh10 | |||
}} |
Revision as of 10:14, 13 September 2013
Short description: | p4@Cdh10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Cdh10_5end |
Coexpression cluster: | MCL_coexpression_mm9:1303 |
Association with transcript: | 6bp_to_ENSMUST00000166873, uc007vii.1, uc007vij.1, uc007vik.1_5end |
EntrezGene: | Cdh10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.72e-24 | 33 |
neuronal stem cell | 3.72e-24 | 33 |
neuroblast | 3.72e-24 | 33 |
electrically signaling cell | 3.72e-24 | 33 |
electrically responsive cell | 3.72e-19 | 39 |
electrically active cell | 3.72e-19 | 39 |
neural cell | 1.30e-16 | 43 |
ectodermal cell | 4.71e-16 | 44 |
neurectodermal cell | 4.71e-16 | 44 |
CNS neuron (sensu Vertebrata) | 2.37e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.37e-14 | 23 |
autonomic neuron | 1.34e-12 | 9 |
embryonic cell | 2.64e-07 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.