FFCP PHASE1:Mm9::chr17:6079693..6079760,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=321007|HGNC=|MCL_coexpression_id=1|UniProt=Q3U213|association_with_transcript=0bp_to_ENSMUST00000024570,ENSMUST00000097432,ENSMUST00000139542,NM_001111017,NM_177311,uc008afy.2,uc008afz.2_5end|description=CAGE_peak_1_at_Serac1_5end|id=chr17:6079693..6079760,-|ontology_enrichment_celltype=CL:0000540!6.50e-15!33;CL:0000047!6.50e-15!33;CL:0000031!6.50e-15!33;CL:0000404!6.50e-15!33;CL:0000393!8.95e-14!39;CL:0000211!8.95e-14!39;CL:0000117!1.99e-10!23;CL:0000337!1.99e-10!23;CL:0002319!3.19e-09!43;CL:0000221!4.66e-09!44;CL:0000133!4.66e-09!44;CL:0000055!3.29e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,6.50e-15,33;CL:0000047,6.50e-15,33;CL:0000031,6.50e-15,33;CL:0000404,6.50e-15,33;CL:0000393,8.95e-14,39;CL:0000211,8.95e-14,39;CL:0000117,1.99e-10,23;CL:0000337,1.99e-10,23;CL:0002319,3.19e-09,43;CL:0000221,4.66e-09,44;CL:0000133,4.66e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.22e-18!75;UBERON:0001016!1.22e-18!75;UBERON:0001017!4.45e-18!73;UBERON:0005743!4.45e-18!73;UBERON:0004121!1.02e-15!102;UBERON:0000924!1.02e-15!102;UBERON:0006601!1.02e-15!102;UBERON:0002020!1.12e-14!34;UBERON:0002346!8.36e-14!71;UBERON:0003075!8.36e-14!71;UBERON:0007284!8.36e-14!71;UBERON:0000033!1.01e-13!63;UBERON:0001049!2.84e-13!52;UBERON:0005068!2.84e-13!52;UBERON:0006241!2.84e-13!52;UBERON:0007135!2.84e-13!52;UBERON:0000955!5.29e-13!50;UBERON:0006238!5.29e-13!50;UBERON:0002791!1.41e-12!29;UBERON:0003528!1.41e-12!29;UBERON:0001893!1.41e-12!29;UBERON:0002616!1.59e-12!49;UBERON:0003056!2.33e-12!49;UBERON:0003080!2.10e-10!40;UBERON:0002780!6.60e-10!39;UBERON:0001890!6.60e-10!39;UBERON:0006240!6.60e-10!39;UBERON:0000956!7.06e-09!21;UBERON:0001869!7.06e-09!21;UBERON:0000203!7.06e-09!21;UBERON:0002619!1.03e-07!17;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10;UBERON:0000153!1.53e-07!94;UBERON:0007811!1.85e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.22e-18,75;UBERON:0004121,3.32e-18,95;UBERON:0000924,3.32e-18,95;UBERON:0006601,3.32e-18,95;UBERON:0001017,4.45e-18,73;UBERON:0002346,7.73e-17,64;UBERON:0003075,7.73e-17,64;UBERON:0007284,7.73e-17,64;UBERON:0010371,4.08e-15,73;UBERON:0002020,1.12e-14,34;UBERON:0000073,1.28e-14,54;UBERON:0010314,1.53e-13,92;UBERON:0001049,2.84e-13,52;UBERON:0005068,2.84e-13,52;UBERON:0006241,2.84e-13,52;UBERON:0007135,2.84e-13,52;UBERON:0003528,1.41e-12,29;UBERON:0002791,1.41e-12,29;UBERON:0001893,1.41e-12,29;UBERON:0003056,2.33e-12,49;UBERON:0000955,1.78e-11,47;UBERON:0006238,1.78e-11,47;UBERON:0002616,5.16e-11,46;UBERON:0003080,2.10e-10,40;UBERON:0002780,6.60e-10,39;UBERON:0001890,6.60e-10,39;UBERON:0006240,6.60e-10,39;UBERON:0000956,7.06e-09,21;UBERON:0001869,7.06e-09,21;UBERON:0000203,7.06e-09,21;UBERON:0002619,1.03e-07,17;UBERON:0002021,1.17e-07,10;UBERON:0000411,1.17e-07,10;UBERON:0001950,1.17e-07,10|phase1_expression=7.04654927261093,6.2815573375085,7.27998783023258,16.3330674105688,21.5385163876929,6.04365378882803,4.90586545250604,3.87369970324729,2.39340827657833,0.936258105287974,1.71217968225505,2.39316476986009,4.10881751834894,4.80812213304486,3.99731714178795,3.64455481301687,3.49780939064073,5.99378114180652,5.48457734422955,3.39511721438424,12.9265801029626,3.67376519443276,5.74639536105658,5.11975752938901,5.73523202667925,5.7423196411502,3.4460959692726,3.878482188346,7.41091335879858,4.78857246543868,3.32595765982957,8.89042942843484,9.22597181376855,0,5.19932915552294,3.82339684324532,4.08338712524738,3.34825304589526,1.5626706890476,3.66466620781659,3.52938892818609,4.09827290975067,2.91306211818692,9.4422613481683,7.90740063512214,7.70896359079063,2.34717403304412,5.45062890951116,2.19686182734472,6.80504646759992,5.45947044338914,4.31257693094915,4.86569557567435,3.62681071005672,4.7053131879945,5.14518872071894,10.8882707176728,4.64104883049698,11.9366711907163,10.0508286061686,10.1413024560989,4.06613438482959,9.78224275722253,8.99899717281399,5.93319817540185,4.9733608046227,2.39680088414724,3.07374644257244,10.8874092923902,10.3954572515402,9.25429829946081,9.99778445413313,11.7060326704355,9.79926393719632,10.4471563409878,19.3035945188104,18.7196997698961,15.9609172606485,15.8214729253931,15.8263545276233,12.8082701043374,12.5019208933622,15.9134309430787,18.5711661310454,18.488587980994,12.6690291753677,16.2303716110977,15.4711540034999,10.1473099066467,9.44644501334819,8.69593466105033,2.58127163094416,2.719885334831,5.93673510801599,6.49776417447669,5.82434953226536,7.02222100658759,5.96506129023202,4.41636207824877,4.59341446863442,6.61964072950398,11.5493829672886,25.4805239706646,0,2.59789249213457,4.30711771307668,3.0331466700887,4.22480354960522,6.73238497482646,7.57054909230606,4.68410382268567,3.95805121805784,6.22661842591358,3.76806601381556,7.05532242814229,3.89566433121994,5.43828929015623,10.2665543413137,1.76922110389975,8.25010934731787,5.07935492458905,4.363877278217,5.59175283654366,20.4946557908083,21.7824575085993,6.386426380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| ||
|EntrezGene=321007 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q3U213 | |||
|association_with_transcript=0bp_to_ENSMUST00000024570,ENSMUST00000097432,ENSMUST00000139542,NM_001111017,NM_177311,uc008afy.2,uc008afz.2_5end | |||
|description=CAGE_peak_1_at_Serac1_5end | |||
|id=chr17:6079693..6079760,- | |||
|ontology_enrichment_celltype=CL:0000540!6.50e-15!33;CL:0000047!6.50e-15!33;CL:0000031!6.50e-15!33;CL:0000404!6.50e-15!33;CL:0000393!8.95e-14!39;CL:0000211!8.95e-14!39;CL:0000117!1.99e-10!23;CL:0000337!1.99e-10!23;CL:0002319!3.19e-09!43;CL:0000221!4.66e-09!44;CL:0000133!4.66e-09!44;CL:0000055!3.29e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.50e-15,33;CL:0000047,6.50e-15,33;CL:0000031,6.50e-15,33;CL:0000404,6.50e-15,33;CL:0000393,8.95e-14,39;CL:0000211,8.95e-14,39;CL:0000117,1.99e-10,23;CL:0000337,1.99e-10,23;CL:0002319,3.19e-09,43;CL:0000221,4.66e-09,44;CL:0000133,4.66e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.22e-18!75;UBERON:0001016!1.22e-18!75;UBERON:0001017!4.45e-18!73;UBERON:0005743!4.45e-18!73;UBERON:0004121!1.02e-15!102;UBERON:0000924!1.02e-15!102;UBERON:0006601!1.02e-15!102;UBERON:0002020!1.12e-14!34;UBERON:0002346!8.36e-14!71;UBERON:0003075!8.36e-14!71;UBERON:0007284!8.36e-14!71;UBERON:0000033!1.01e-13!63;UBERON:0001049!2.84e-13!52;UBERON:0005068!2.84e-13!52;UBERON:0006241!2.84e-13!52;UBERON:0007135!2.84e-13!52;UBERON:0000955!5.29e-13!50;UBERON:0006238!5.29e-13!50;UBERON:0002791!1.41e-12!29;UBERON:0003528!1.41e-12!29;UBERON:0001893!1.41e-12!29;UBERON:0002616!1.59e-12!49;UBERON:0003056!2.33e-12!49;UBERON:0003080!2.10e-10!40;UBERON:0002780!6.60e-10!39;UBERON:0001890!6.60e-10!39;UBERON:0006240!6.60e-10!39;UBERON:0000956!7.06e-09!21;UBERON:0001869!7.06e-09!21;UBERON:0000203!7.06e-09!21;UBERON:0002619!1.03e-07!17;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10;UBERON:0000153!1.53e-07!94;UBERON:0007811!1.85e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.22e-18,75;UBERON:0004121,3.32e-18,95;UBERON:0000924,3.32e-18,95;UBERON:0006601,3.32e-18,95;UBERON:0001017,4.45e-18,73;UBERON:0002346,7.73e-17,64;UBERON:0003075,7.73e-17,64;UBERON:0007284,7.73e-17,64;UBERON:0010371,4.08e-15,73;UBERON:0002020,1.12e-14,34;UBERON:0000073,1.28e-14,54;UBERON:0010314,1.53e-13,92;UBERON:0001049,2.84e-13,52;UBERON:0005068,2.84e-13,52;UBERON:0006241,2.84e-13,52;UBERON:0007135,2.84e-13,52;UBERON:0003528,1.41e-12,29;UBERON:0002791,1.41e-12,29;UBERON:0001893,1.41e-12,29;UBERON:0003056,2.33e-12,49;UBERON:0000955,1.78e-11,47;UBERON:0006238,1.78e-11,47;UBERON:0002616,5.16e-11,46;UBERON:0003080,2.10e-10,40;UBERON:0002780,6.60e-10,39;UBERON:0001890,6.60e-10,39;UBERON:0006240,6.60e-10,39;UBERON:0000956,7.06e-09,21;UBERON:0001869,7.06e-09,21;UBERON:0000203,7.06e-09,21;UBERON:0002619,1.03e-07,17;UBERON:0002021,1.17e-07,10;UBERON:0000411,1.17e-07,10;UBERON:0001950,1.17e-07,10 | |||
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| |||
|short_description=p1@Serac1 | |||
}} |
Revision as of 15:05, 13 September 2013
Short description: | p1@Serac1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Serac1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000024570, ENSMUST00000097432, ENSMUST00000139542, NM_001111017, NM_177311, uc008afy.2, uc008afz.2_5end |
EntrezGene: | Serac1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.50e-15 | 33 |
neuronal stem cell | 6.50e-15 | 33 |
neuroblast | 6.50e-15 | 33 |
electrically signaling cell | 6.50e-15 | 33 |
electrically responsive cell | 8.95e-14 | 39 |
electrically active cell | 8.95e-14 | 39 |
CNS neuron (sensu Vertebrata) | 1.99e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.99e-10 | 23 |
neural cell | 3.19e-09 | 43 |
ectodermal cell | 4.66e-09 | 44 |
neurectodermal cell | 4.66e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.22e-18 | 75 |
ectoderm-derived structure | 3.32e-18 | 95 |
ectoderm | 3.32e-18 | 95 |
presumptive ectoderm | 3.32e-18 | 95 |
central nervous system | 4.45e-18 | 73 |
neurectoderm | 7.73e-17 | 64 |
neural plate | 7.73e-17 | 64 |
presumptive neural plate | 7.73e-17 | 64 |
ecto-epithelium | 4.08e-15 | 73 |
gray matter | 1.12e-14 | 34 |
regional part of nervous system | 1.28e-14 | 54 |
structure with developmental contribution from neural crest | 1.53e-13 | 92 |
neural tube | 2.84e-13 | 52 |
neural rod | 2.84e-13 | 52 |
future spinal cord | 2.84e-13 | 52 |
neural keel | 2.84e-13 | 52 |
brain grey matter | 1.41e-12 | 29 |
regional part of telencephalon | 1.41e-12 | 29 |
telencephalon | 1.41e-12 | 29 |
pre-chordal neural plate | 2.33e-12 | 49 |
brain | 1.78e-11 | 47 |
future brain | 1.78e-11 | 47 |
regional part of brain | 5.16e-11 | 46 |
anterior neural tube | 2.10e-10 | 40 |
regional part of forebrain | 6.60e-10 | 39 |
forebrain | 6.60e-10 | 39 |
future forebrain | 6.60e-10 | 39 |
cerebral cortex | 7.06e-09 | 21 |
cerebral hemisphere | 7.06e-09 | 21 |
pallium | 7.06e-09 | 21 |
regional part of cerebral cortex | 1.03e-07 | 17 |
occipital lobe | 1.17e-07 | 10 |
visual cortex | 1.17e-07 | 10 |
neocortex | 1.17e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.