FFCP PHASE1:Mm9::chr17:85025798..85025852,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=213575|HGNC=|MCL_coexpression_id=3121|UniProt=Q8K0T2|association_with_transcript=0bp_to_ENSMUST00000025101,NM_172256,uc008dsy.1_5end|description=CAGE_peak_1_at_Dync2li1_5end|id=chr17:85025798..85025852,+|ontology_enrichment_celltype=CL:0000055!4.18e-08!50;CL:0000221!6.36e-08!44;CL:0000133!6.36e-08!44;CL:0002319!1.72e-07!43|ontology_enrichment_celltype_v019_2=CL:0000221,6.31e-08,44;CL:0000133,6.31e-08,44;CL:0002319,1.71e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.86e-18!73;UBERON:0005743!3.86e-18!73;UBERON:0000073!1.48e-17!75;UBERON:0001016!1.48e-17!75;UBERON:0004121!1.04e-16!102;UBERON:0000924!1.04e-16!102;UBERON:0006601!1.04e-16!102;UBERON:0002346!3.26e-16!71;UBERON:0003075!3.26e-16!71;UBERON:0007284!3.26e-16!71;UBERON:0000033!3.68e-16!63;UBERON:0003056!2.96e-15!49;UBERON:0001049!2.44e-14!52;UBERON:0005068!2.44e-14!52;UBERON:0006241!2.44e-14!52;UBERON:0007135!2.44e-14!52;UBERON:0000955!3.06e-14!50;UBERON:0006238!3.06e-14!50;UBERON:0002616!8.32e-14!49;UBERON:0003080!1.12e-13!40;UBERON:0002780!1.67e-13!39;UBERON:0001890!1.67e-13!39;UBERON:0006240!1.67e-13!39;UBERON:0002020!2.10e-09!34;UBERON:0002791!6.15e-09!29;UBERON:0003528!6.15e-09!29;UBERON:0001893!6.15e-09!29;UBERON:0000153!6.51e-08!94;UBERON:0007811!9.75e-08!86;UBERON:0000475!3.34e-07!200;UBERON:0002619!3.78e-07!17;UBERON:0000956!8.42e-07!21;UBERON:0001869!8.42e-07!21;UBERON:0000203!8.42e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.78e-18,73;UBERON:0001016,1.45e-17,75;UBERON:0004121,2.98e-16,95;UBERON:0000924,2.98e-16,95;UBERON:0006601,2.98e-16,95;UBERON:0002346,4.40e-16,64;UBERON:0003075,4.40e-16,64;UBERON:0007284,4.40e-16,64;UBERON:0003056,2.91e-15,49;UBERON:0000073,2.15e-14,54;UBERON:0001049,2.40e-14,52;UBERON:0005068,2.40e-14,52;UBERON:0006241,2.40e-14,52;UBERON:0007135,2.40e-14,52;UBERON:0010371,2.48e-14,73;UBERON:0000955,3.35e-14,47;UBERON:0006238,3.35e-14,47;UBERON:0002616,9.13e-14,46;UBERON:0003080,1.10e-13,40;UBERON:0002780,1.65e-13,39;UBERON:0001890,1.65e-13,39;UBERON:0006240,1.65e-13,39;UBERON:0010314,1.28e-11,92;UBERON:0002020,2.07e-09,34;UBERON:0003528,6.09e-09,29;UBERON:0002791,6.09e-09,29;UBERON:0001893,6.09e-09,29;UBERON:0002619,3.75e-07,17;UBERON:0000956,8.37e-07,21;UBERON:0001869,8.37e-07,21;UBERON:0000203,8.37e-07,21|phase1_expression=57.493436110621,1.04692622291808,0.454999239389536,0,0,1.17515490338323,2.33612640595526,0.516493293766305,0.140788722151667,0,0,0,0.342401459862411,0.524522414513984,0.999329285446988,0.809901069559304,0.699561878128147,0.630924330716475,0.548457734422955,0,31.0408009051405,1.29078236561151,0.522399578277871,1.91990907352088,1.37645568640302,1.14846392823004,0.430761996159075,0.646413698057667,0.760093677825496,0.504060259519861,0.886922042621219,0,0,0,5.48818077527422,4.3221007793208,2.6542016314108,3.76678467663217,3.1253413780952,3.66466620781659,8.2352408324342,4.78131839470912,3.88408282424923,51.3659017340355,46.8361422234157,42.2157529971868,22.6893489860931,51.2359117494049,68.7617751958897,77.5775297306391,60.0541748772805,57.5010257459886,0.335565212115473,0,1.34437519656986,12.3484529297255,23.2092086350393,15.4701627683233,21.647861311977,19.0436752537932,22.1840991227163,18.6364492638023,29.3467282716676,2.6996991518442,2.96659908770092,5.6838409195688,23.9680088414724,48.0272881651943,14.7239249478038,16.2007125998029,18.9292465216244,19.7099179238624,22.5285911770646,21.313399063402,18.8815577905926,23.8996884518605,14.3150645299205,20.42997409363,25.8058975870489,29.278755876103,25.9824907830843,28.6502353806218,22.8930059181132,35.4540444319958,25.9757021220577,21.2132581541041,21.7828671622628,21.8087351615602,6.13382165998791,17.986031305415,27.8269909153611,1.72084775396277,0,0.539703191637817,0,0.896053774194671,10.2524426696179,38.1763922574849,42.8646907594733,48.0541821334063,40.1403746363539,87.2620046417361,137.594829441589,78.2173373468664,8.87613268145978,10.6411143499541,10.6160133453104,10.1623652949963,6.47344709117929,20.1881309128162,18.3894446372104,20.0947215686013,15.681853813412,23.0605640045513,18.4614270203057,18.8499886994513,7.16865406429684,9.54355755671417,2.65383165584962,9.38247729694973,3.97514733228708,6.78825354389311,9.31958806090611,17.5668478206928,11.7290155815535,3.0654846625031,3.23500836165985,2.99951365496704,3.30382590389968,23.0677584683427,25.6200337578431,21.4868942112998,26.421296669226,27.105838477015,24.3112012134685,23.3627418817571,32.6904357959515,10.5745925018579,17.4378703319236,8.83855794723191,35.6530013717808,23.6799167566477,28.6298786390505,25.921228667743,19.6625482547337,26.3914263786791,24.3624483855295,24.8355235909455,21.9879352791499,19.4779262572854,18.1229657888867,17.535658594206,20.5754964426942,14.626590993931,21.4013421864261,26.0734889532226,2.80885274925294,4.63226232806487,2.84163499395593,5.17814431338755,10.3191466391682,10.6236616261999,11.1270025725049,11.215561209602,9.2560267732427,9.76642567951713,6.43856163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| ||
|EntrezGene=213575 | |||
|HGNC= | |||
|MCL_coexpression_id=3121 | |||
|UniProt=Q8K0T2 | |||
|association_with_transcript=0bp_to_ENSMUST00000025101,NM_172256,uc008dsy.1_5end | |||
|description=CAGE_peak_1_at_Dync2li1_5end | |||
|id=chr17:85025798..85025852,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.18e-08!50;CL:0000221!6.36e-08!44;CL:0000133!6.36e-08!44;CL:0002319!1.72e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.31e-08,44;CL:0000133,6.31e-08,44;CL:0002319,1.71e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.86e-18!73;UBERON:0005743!3.86e-18!73;UBERON:0000073!1.48e-17!75;UBERON:0001016!1.48e-17!75;UBERON:0004121!1.04e-16!102;UBERON:0000924!1.04e-16!102;UBERON:0006601!1.04e-16!102;UBERON:0002346!3.26e-16!71;UBERON:0003075!3.26e-16!71;UBERON:0007284!3.26e-16!71;UBERON:0000033!3.68e-16!63;UBERON:0003056!2.96e-15!49;UBERON:0001049!2.44e-14!52;UBERON:0005068!2.44e-14!52;UBERON:0006241!2.44e-14!52;UBERON:0007135!2.44e-14!52;UBERON:0000955!3.06e-14!50;UBERON:0006238!3.06e-14!50;UBERON:0002616!8.32e-14!49;UBERON:0003080!1.12e-13!40;UBERON:0002780!1.67e-13!39;UBERON:0001890!1.67e-13!39;UBERON:0006240!1.67e-13!39;UBERON:0002020!2.10e-09!34;UBERON:0002791!6.15e-09!29;UBERON:0003528!6.15e-09!29;UBERON:0001893!6.15e-09!29;UBERON:0000153!6.51e-08!94;UBERON:0007811!9.75e-08!86;UBERON:0000475!3.34e-07!200;UBERON:0002619!3.78e-07!17;UBERON:0000956!8.42e-07!21;UBERON:0001869!8.42e-07!21;UBERON:0000203!8.42e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.78e-18,73;UBERON:0001016,1.45e-17,75;UBERON:0004121,2.98e-16,95;UBERON:0000924,2.98e-16,95;UBERON:0006601,2.98e-16,95;UBERON:0002346,4.40e-16,64;UBERON:0003075,4.40e-16,64;UBERON:0007284,4.40e-16,64;UBERON:0003056,2.91e-15,49;UBERON:0000073,2.15e-14,54;UBERON:0001049,2.40e-14,52;UBERON:0005068,2.40e-14,52;UBERON:0006241,2.40e-14,52;UBERON:0007135,2.40e-14,52;UBERON:0010371,2.48e-14,73;UBERON:0000955,3.35e-14,47;UBERON:0006238,3.35e-14,47;UBERON:0002616,9.13e-14,46;UBERON:0003080,1.10e-13,40;UBERON:0002780,1.65e-13,39;UBERON:0001890,1.65e-13,39;UBERON:0006240,1.65e-13,39;UBERON:0010314,1.28e-11,92;UBERON:0002020,2.07e-09,34;UBERON:0003528,6.09e-09,29;UBERON:0002791,6.09e-09,29;UBERON:0001893,6.09e-09,29;UBERON:0002619,3.75e-07,17;UBERON:0000956,8.37e-07,21;UBERON:0001869,8.37e-07,21;UBERON:0000203,8.37e-07,21 | |||
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| |||
|short_description=p1@Dync2li1 | |||
}} |
Revision as of 15:29, 13 September 2013
Short description: | p1@Dync2li1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dync2li1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3121 |
Association with transcript: | 0bp_to_ENSMUST00000025101, NM_172256, uc008dsy.1_5end |
EntrezGene: | Dync2li1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.31e-08 | 44 |
neurectodermal cell | 6.31e-08 | 44 |
neural cell | 1.71e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.78e-18 | 73 |
nervous system | 1.45e-17 | 75 |
ectoderm-derived structure | 2.98e-16 | 95 |
ectoderm | 2.98e-16 | 95 |
presumptive ectoderm | 2.98e-16 | 95 |
neurectoderm | 4.40e-16 | 64 |
neural plate | 4.40e-16 | 64 |
presumptive neural plate | 4.40e-16 | 64 |
pre-chordal neural plate | 2.91e-15 | 49 |
regional part of nervous system | 2.15e-14 | 54 |
neural tube | 2.40e-14 | 52 |
neural rod | 2.40e-14 | 52 |
future spinal cord | 2.40e-14 | 52 |
neural keel | 2.40e-14 | 52 |
ecto-epithelium | 2.48e-14 | 73 |
brain | 3.35e-14 | 47 |
future brain | 3.35e-14 | 47 |
regional part of brain | 9.13e-14 | 46 |
anterior neural tube | 1.10e-13 | 40 |
regional part of forebrain | 1.65e-13 | 39 |
forebrain | 1.65e-13 | 39 |
future forebrain | 1.65e-13 | 39 |
structure with developmental contribution from neural crest | 1.28e-11 | 92 |
gray matter | 2.07e-09 | 34 |
brain grey matter | 6.09e-09 | 29 |
regional part of telencephalon | 6.09e-09 | 29 |
telencephalon | 6.09e-09 | 29 |
regional part of cerebral cortex | 3.75e-07 | 17 |
cerebral cortex | 8.37e-07 | 21 |
cerebral hemisphere | 8.37e-07 | 21 |
pallium | 8.37e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.