FFCP PHASE1:Mm9::chr19:8738796..8738827,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12669|HGNC=|MCL_coexpression_id=2|UniProt=Q52KQ0,P12657|association_with_transcript=301bp_to_ENSMUST00000035444,ENSMUST00000163785,NM_001112697,NM_007698,uc008gmf.2,uc008gmg.2_5end|description=CAGE_peak_2_at_Chrm1_5end|id=chr19:8738796..8738827,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002609,7.36e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!1.56e-15!50;UBERON:0006238!1.56e-15!50;UBERON:0003056!3.49e-15!49;UBERON:0000033!4.94e-15!63;UBERON:0001017!6.06e-15!73;UBERON:0005743!6.06e-15!73;UBERON:0002616!7.04e-15!49;UBERON:0004121!1.09e-14!102;UBERON:0000924!1.09e-14!102;UBERON:0006601!1.09e-14!102;UBERON:0002346!1.25e-14!71;UBERON:0003075!1.25e-14!71;UBERON:0007284!1.25e-14!71;UBERON:0003080!1.77e-14!40;UBERON:0000073!2.08e-14!75;UBERON:0001016!2.08e-14!75;UBERON:0002791!6.23e-14!29;UBERON:0003528!6.23e-14!29;UBERON:0001893!6.23e-14!29;UBERON:0002780!7.03e-14!39;UBERON:0001890!7.03e-14!39;UBERON:0006240!7.03e-14!39;UBERON:0001049!2.49e-12!52;UBERON:0005068!2.49e-12!52;UBERON:0006241!2.49e-12!52;UBERON:0007135!2.49e-12!52;UBERON:0002020!3.94e-12!34;UBERON:0000956!1.76e-11!21;UBERON:0001869!1.76e-11!21;UBERON:0000203!1.76e-11!21;UBERON:0002619!1.83e-09!17;UBERON:0002021!8.87e-09!10;UBERON:0000411!8.87e-09!10;UBERON:0001950!8.87e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0003528,2.09e-23,29;UBERON:0002791,2.09e-23,29;UBERON:0001893,2.09e-23,29;UBERON:0000956,4.10e-21,21;UBERON:0001869,4.10e-21,21;UBERON:0000203,4.10e-21,21;UBERON:0003080,4.14e-21,40;UBERON:0000955,5.02e-21,47;UBERON:0006238,5.02e-21,47;UBERON:0002780,4.55e-20,39;UBERON:0001890,4.55e-20,39;UBERON:0006240,4.55e-20,39;UBERON:0002616,6.43e-20,46;UBERON:0000073,1.34e-19,54;UBERON:0002020,9.31e-19,34;UBERON:0001017,3.72e-18,73;UBERON:0003056,3.97e-18,49;UBERON:0002619,2.00e-17,17;UBERON:0001016,2.37e-17,75;UBERON:0001049,1.70e-16,52;UBERON:0005068,1.70e-16,52;UBERON:0006241,1.70e-16,52;UBERON:0007135,1.70e-16,52;UBERON:0002021,1.02e-14,10;UBERON:0000411,1.02e-14,10;UBERON:0001950,1.02e-14,10;UBERON:0002346,1.08e-14,64;UBERON:0003075,1.08e-14,64;UBERON:0007284,1.08e-14,64;UBERON:0004121,6.98e-14,95;UBERON:0000924,6.98e-14,95;UBERON:0006601,6.98e-14,95;UBERON:0010371,1.19e-11,73;UBERON:0010314,2.64e-09,92|phase1_expression=0,0,0,0,0,1.00727563147134,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,8.41928572495591,0,0,0,0.68822784320151,0,0.86152399231815,0.430942465371778,0.380046838912748,0.252030129759931,1.10865255327652,0,0,0,0,0.166234645358492,0,0.418531630736908,0,1.57057123192139,0.588231488031014,1.36609096991689,1.94204141212461,0,0,0,0,0,0,0,0.699932108126813,0,0,0,0,0,0,0,0,0,0.633831403506179,0,0,0,0,0,0.599200221036809,1.15265491596466,1.14058573539325,2.29510095163874,1.26194976810829,0.571301968807607,0.441737081903227,2.44981598429908,3.1629005436018,8.27296907949019,1.10115880999389,10.5980490610706,6.75868746327471,0.131886287730194,0.182975287204819,0.52091337055676,1.95428099300967,4.50210088025344,12.6822545654752,0,0.284743361598206,0,0.302904773332736,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,1.82694207550496,0,1.33597925158342,0.173485326766136,0,0.461230994512117,0.452167921657868,1.17588707135705,1.63366568728578,0.247194967734374,0.433798070759735,1.76922110389975,0,0,0,1.86391761218122,0.585561594023094,0,0.766371165625774,0,0,0.127070227073065,4.6435098215495,66.7950880115195,29.4031183944103,70.0512010374874,68.2760271071982,13.2984348518118,32.4482526135515,0.305518091550949,0.124406970610093,0.252722758433675,1.26265113531884,0,0.459804208866946,0.180062129805349,0.452114453507145,0.680364991513279,0.512454881139399,0.937017245597288,1.81092359517311,0,0.378212160335639,0.527853372491847,0.219195732427575,0.556094498451196,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,82.8542397342661,11.6282211988591,0,0.264450566663544,0,0.232236671860439,0.128867461322093,0.403367049246685,0,1.52180500890047,0.474529061544512,1.31759163779209,0.502670417600539,0.795825888164603,0.974820435595601,1.79763881730844,1.51296634912286,0.796565093017469,0,0.228497025219458,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0.549122826376163,0,0,0,0.252578877947112,0,0,0.184753190166605,0,0.325929952884052,0,0,0,0,0,0,0.44292937929755,0.318909537314974,0.163863314715738,0.172684981865896,0,0,0,0,0.551873492609465,1.60550589987792,1.28932855251423,0,0.252470927204373,0.315508219416257,1.56175497718655,0.215423397732799,1.43381278771531,0.222798674082394,0.283076530788832,0.404810701674894,3.79932615284705,1.18586333383957,44.6636629826312,0.283880170416537,0,0.162886959353576,0,2.65490276679926,0,0,0.565815239267694,0.590603785761546,1.53717573971964,0.775284879504663,1.09060118843252,0.712994756769443,0.948110273807448,0,1.03135543248187,1.02131881726136,0,0.646793418913773,0.214337035031592,0.532020700926821,0.356737635204141,0,0.608929898229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| ||
|EntrezGene=12669 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q52KQ0,P12657 | |||
|association_with_transcript=301bp_to_ENSMUST00000035444,ENSMUST00000163785,NM_001112697,NM_007698,uc008gmf.2,uc008gmg.2_5end | |||
|description=CAGE_peak_2_at_Chrm1_5end | |||
|id=chr19:8738796..8738827,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,7.36e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!1.56e-15!50;UBERON:0006238!1.56e-15!50;UBERON:0003056!3.49e-15!49;UBERON:0000033!4.94e-15!63;UBERON:0001017!6.06e-15!73;UBERON:0005743!6.06e-15!73;UBERON:0002616!7.04e-15!49;UBERON:0004121!1.09e-14!102;UBERON:0000924!1.09e-14!102;UBERON:0006601!1.09e-14!102;UBERON:0002346!1.25e-14!71;UBERON:0003075!1.25e-14!71;UBERON:0007284!1.25e-14!71;UBERON:0003080!1.77e-14!40;UBERON:0000073!2.08e-14!75;UBERON:0001016!2.08e-14!75;UBERON:0002791!6.23e-14!29;UBERON:0003528!6.23e-14!29;UBERON:0001893!6.23e-14!29;UBERON:0002780!7.03e-14!39;UBERON:0001890!7.03e-14!39;UBERON:0006240!7.03e-14!39;UBERON:0001049!2.49e-12!52;UBERON:0005068!2.49e-12!52;UBERON:0006241!2.49e-12!52;UBERON:0007135!2.49e-12!52;UBERON:0002020!3.94e-12!34;UBERON:0000956!1.76e-11!21;UBERON:0001869!1.76e-11!21;UBERON:0000203!1.76e-11!21;UBERON:0002619!1.83e-09!17;UBERON:0002021!8.87e-09!10;UBERON:0000411!8.87e-09!10;UBERON:0001950!8.87e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,2.09e-23,29;UBERON:0002791,2.09e-23,29;UBERON:0001893,2.09e-23,29;UBERON:0000956,4.10e-21,21;UBERON:0001869,4.10e-21,21;UBERON:0000203,4.10e-21,21;UBERON:0003080,4.14e-21,40;UBERON:0000955,5.02e-21,47;UBERON:0006238,5.02e-21,47;UBERON:0002780,4.55e-20,39;UBERON:0001890,4.55e-20,39;UBERON:0006240,4.55e-20,39;UBERON:0002616,6.43e-20,46;UBERON:0000073,1.34e-19,54;UBERON:0002020,9.31e-19,34;UBERON:0001017,3.72e-18,73;UBERON:0003056,3.97e-18,49;UBERON:0002619,2.00e-17,17;UBERON:0001016,2.37e-17,75;UBERON:0001049,1.70e-16,52;UBERON:0005068,1.70e-16,52;UBERON:0006241,1.70e-16,52;UBERON:0007135,1.70e-16,52;UBERON:0002021,1.02e-14,10;UBERON:0000411,1.02e-14,10;UBERON:0001950,1.02e-14,10;UBERON:0002346,1.08e-14,64;UBERON:0003075,1.08e-14,64;UBERON:0007284,1.08e-14,64;UBERON:0004121,6.98e-14,95;UBERON:0000924,6.98e-14,95;UBERON:0006601,6.98e-14,95;UBERON:0010371,1.19e-11,73;UBERON:0010314,2.64e-09,92 | |||
|phase1_expression=0,0,0,0,0,1.00727563147134,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,8.41928572495591,0,0,0,0.68822784320151,0,0.86152399231815,0.430942465371778,0.380046838912748,0.252030129759931,1.10865255327652,0,0,0,0,0.166234645358492,0,0.418531630736908,0,1.57057123192139,0.588231488031014,1.36609096991689,1.94204141212461,0,0,0,0,0,0,0,0.699932108126813,0,0,0,0,0,0,0,0,0,0.633831403506179,0,0,0,0,0,0.599200221036809,1.15265491596466,1.14058573539325,2.29510095163874,1.26194976810829,0.571301968807607,0.441737081903227,2.44981598429908,3.1629005436018,8.27296907949019,1.10115880999389,10.5980490610706,6.75868746327471,0.131886287730194,0.182975287204819,0.52091337055676,1.95428099300967,4.50210088025344,12.6822545654752,0,0.284743361598206,0,0.302904773332736,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,1.82694207550496,0,1.33597925158342,0.173485326766136,0,0.461230994512117,0.452167921657868,1.17588707135705,1.63366568728578,0.247194967734374,0.433798070759735,1.76922110389975,0,0,0,1.86391761218122,0.585561594023094,0,0.766371165625774,0,0,0.127070227073065,4.6435098215495,66.7950880115195,29.4031183944103,70.0512010374874,68.2760271071982,13.2984348518118,32.4482526135515,0.305518091550949,0.124406970610093,0.252722758433675,1.26265113531884,0,0.459804208866946,0.180062129805349,0.452114453507145,0.680364991513279,0.512454881139399,0.937017245597288,1.81092359517311,0,0.378212160335639,0.527853372491847,0.219195732427575,0.556094498451196,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,82.8542397342661,11.6282211988591,0,0.264450566663544,0,0.232236671860439,0.128867461322093,0.403367049246685,0,1.52180500890047,0.474529061544512,1.31759163779209,0.502670417600539,0.795825888164603,0.974820435595601,1.79763881730844,1.51296634912286,0.796565093017469,0,0.228497025219458,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0.549122826376163,0,0,0,0.252578877947112,0,0,0.184753190166605,0,0.325929952884052,0,0,0,0,0,0,0.44292937929755,0.318909537314974,0.163863314715738,0.172684981865896,0,0,0,0,0.551873492609465,1.60550589987792,1.28932855251423,0,0.252470927204373,0.315508219416257,1.56175497718655,0.215423397732799,1.43381278771531,0.222798674082394,0.283076530788832,0.404810701674894,3.79932615284705,1.18586333383957,44.6636629826312,0.283880170416537,0,0.162886959353576,0,2.65490276679926,0,0,0.565815239267694,0.590603785761546,1.53717573971964,0.775284879504663,1.09060118843252,0.712994756769443,0.948110273807448,0,1.03135543248187,1.02131881726136,0,0.646793418913773,0.214337035031592,0.532020700926821,0.356737635204141,0,0.608929898229199,0,0,25.8018225724305,0,0.161464426695906,0.180938774784468,0.119372344003136,0,1.1659233465194,0.556275906031529,0,0.206386867963223,0,0,0.136694227721025,0.228778173206523,0,0,0,2.86401185404534,0.158167996790568,0,0.86404272657441,0.836353184057875,1.09181281873089,1.07891477107857,1.73572257023205,0.26175594198403,0.129614973291793,2.4853572523477,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386379188064381,0,0,0.857473516316263,6.01886524842436,59.298943474792,66.2868340570335,65.8829840455306,71.8346302196614,65.7679218979817,83.8487226102568,53.3267775183127,73.8526773287722,66.1587917116939,76.6285261392694,0,0,0,0,0.419226325255965,0.367687016900028,0.666740183404846,0.824140228955577,0.64183841918363,0.758091635291392,1.2673964994512,0.565879024158229,0.561849044819294,0.640251524048693,1.03383844120104,2.85776214769844,0.811190281613988,0.964546102318525,0,0.588795680537589,1.02860775715625,0.887379030796687,1.43061713968393,0.436039249896986,0.564656282491984,0.846146078916765,0.548783918618318,1.31534855718921,0.407412341537585,0.561142271657738,0.830445126869219,0.394017929502254,0.409231043169689,0.309873682371932,0.385813221962283,1.74867404556562,0.935726433781634,0.214871054048298,0.191288332068843,0.661774257358546,0 | |||
|short_description=p2@Chrm1 | |||
}} |
Revision as of 18:26, 13 September 2013
Short description: | p2@Chrm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Chrm1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 301bp_to_ENSMUST00000035444, ENSMUST00000163785, NM_001112697, NM_007698, uc008gmf.2, uc008gmg.2_5end |
EntrezGene: | Chrm1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 7.36e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 2.09e-23 | 29 |
regional part of telencephalon | 2.09e-23 | 29 |
telencephalon | 2.09e-23 | 29 |
cerebral cortex | 4.10e-21 | 21 |
cerebral hemisphere | 4.10e-21 | 21 |
pallium | 4.10e-21 | 21 |
anterior neural tube | 4.14e-21 | 40 |
brain | 5.02e-21 | 47 |
future brain | 5.02e-21 | 47 |
regional part of forebrain | 4.55e-20 | 39 |
forebrain | 4.55e-20 | 39 |
future forebrain | 4.55e-20 | 39 |
regional part of brain | 6.43e-20 | 46 |
regional part of nervous system | 1.34e-19 | 54 |
gray matter | 9.31e-19 | 34 |
central nervous system | 3.72e-18 | 73 |
pre-chordal neural plate | 3.97e-18 | 49 |
regional part of cerebral cortex | 2.00e-17 | 17 |
nervous system | 2.37e-17 | 75 |
neural tube | 1.70e-16 | 52 |
neural rod | 1.70e-16 | 52 |
future spinal cord | 1.70e-16 | 52 |
neural keel | 1.70e-16 | 52 |
occipital lobe | 1.02e-14 | 10 |
visual cortex | 1.02e-14 | 10 |
neocortex | 1.02e-14 | 10 |
neurectoderm | 1.08e-14 | 64 |
neural plate | 1.08e-14 | 64 |
presumptive neural plate | 1.08e-14 | 64 |
ectoderm-derived structure | 6.98e-14 | 95 |
ectoderm | 6.98e-14 | 95 |
presumptive ectoderm | 6.98e-14 | 95 |
ecto-epithelium | 1.19e-11 | 73 |
structure with developmental contribution from neural crest | 2.64e-09 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.