FFCP PHASE1:Mm9::chr1:121733665..121733716,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19258|HGNC=|MCL_coexpression_id=189|UniProt=E9Q210,E9PUU9,Q8BQQ4,Q9WU22|association_with_transcript=-17bp_to_ENSMUST00000166422,ENSMUST00000168303,NM_019933,uc007ciz.1_5end|description=CAGE_peak_3_at_Ptpn4_5end|id=chr1:121733665..121733716,-|ontology_enrichment_celltype=CL:0000117!2.64e-07!23;CL:0000337!2.64e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,5.92e-11,23;CL:0000337,5.92e-11,23;CL:0002610,2.15e-08,3;CL:0002614,2.66e-07,3;CL:0000540,7.42e-07,33;CL:0000047,7.42e-07,33;CL:0000031,7.42e-07,33;CL:0000404,7.42e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.96e-16!52;UBERON:0005068!1.96e-16!52;UBERON:0006241!1.96e-16!52;UBERON:0007135!1.96e-16!52;UBERON:0000955!7.36e-16!50;UBERON:0006238!7.36e-16!50;UBERON:0002616!3.44e-15!49;UBERON:0000033!7.35e-15!63;UBERON:0002346!8.47e-15!71;UBERON:0003075!8.47e-15!71;UBERON:0007284!8.47e-15!71;UBERON:0001017!1.85e-14!73;UBERON:0005743!1.85e-14!73;UBERON:0000073!1.27e-13!75;UBERON:0001016!1.27e-13!75;UBERON:0004121!1.35e-13!102;UBERON:0000924!1.35e-13!102;UBERON:0006601!1.35e-13!102;UBERON:0002020!1.81e-12!34;UBERON:0003056!1.59e-11!49;UBERON:0007811!1.86e-10!86;UBERON:0003080!2.36e-10!40;UBERON:0002791!7.58e-10!29;UBERON:0003528!7.58e-10!29;UBERON:0001893!7.58e-10!29;UBERON:0000153!8.37e-10!94;UBERON:0002780!9.13e-10!39;UBERON:0001890!9.13e-10!39;UBERON:0006240!9.13e-10!39;UBERON:0000956!6.89e-08!21;UBERON:0001869!6.89e-08!21;UBERON:0000203!6.89e-08!21;UBERON:0002021!9.98e-08!10;UBERON:0000411!9.98e-08!10;UBERON:0001950!9.98e-08!10;UBERON:0002619!1.34e-07!17;UBERON:0003076!1.88e-07!12;UBERON:0003057!1.88e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.13e-33,54;UBERON:0001017,5.47e-30,73;UBERON:0001049,3.25e-29,52;UBERON:0005068,3.25e-29,52;UBERON:0006241,3.25e-29,52;UBERON:0007135,3.25e-29,52;UBERON:0001016,5.66e-29,75;UBERON:0002346,3.38e-24,64;UBERON:0003075,3.38e-24,64;UBERON:0007284,3.38e-24,64;UBERON:0000955,3.70e-24,47;UBERON:0006238,3.70e-24,47;UBERON:0002020,8.01e-23,34;UBERON:0004121,1.13e-22,95;UBERON:0000924,1.13e-22,95;UBERON:0006601,1.13e-22,95;UBERON:0002616,1.69e-22,46;UBERON:0002021,1.48e-20,10;UBERON:0000411,1.48e-20,10;UBERON:0001950,1.48e-20,10;UBERON:0010371,2.56e-20,73;UBERON:0003528,9.40e-18,29;UBERON:0002791,9.40e-18,29;UBERON:0001893,9.40e-18,29;UBERON:0003080,1.92e-17,40;UBERON:0002780,5.95e-16,39;UBERON:0001890,5.95e-16,39;UBERON:0006240,5.95e-16,39;UBERON:0003056,7.61e-15,49;UBERON:0010314,1.26e-14,92;UBERON:0002619,1.44e-13,17;UBERON:0003076,3.69e-13,12;UBERON:0003057,3.69e-13,12;UBERON:0000956,1.27e-12,21;UBERON:0001869,1.27e-12,21;UBERON:0000203,1.27e-12,21;UBERON:0000025,2.74e-11,114;UBERON:0004111,4.51e-10,122;UBERON:0002950,2.33e-09,4;UBERON:0001891,2.33e-09,4;UBERON:0009616,2.33e-09,4;UBERON:0010286,2.33e-09,4;UBERON:0004684,2.15e-08,3;UBERON:0002275,2.15e-08,3;UBERON:0002240,2.90e-08,6;UBERON:0005174,2.90e-08,6;UBERON:0001137,2.90e-08,6;UBERON:0002038,2.66e-07,3;UBERON:0009663,2.66e-07,3;UBERON:0009661,2.66e-07,3;UBERON:0000125,2.66e-07,3;UBERON:0002308,2.66e-07,3;UBERON:0011216,7.16e-07,194|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,0.422366166455,0,0.171217968225505,0.0797721589953364,0.513602189793617,0.262261207256992,0,0,0,0,0,0,2.8064285749853,0,0.522399578277871,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0.664938581433969,0,0,0,0,0,0,0,0.125896817975577,0,0,0.782391344348039,0.218025156380447,0,0.194429899074283,0.139986421625363,0,0.335565212115473,0.725362142011344,0.336093799142464,0,0,0,1.01158230429799,1.05798195854407,0,0,0,0,0,0,0,0,0.829516898467821,0.405017814995072,0,1.71390590642282,2.20868540951614,0.734944795289724,0.191690942036473,0.919218786610021,12.1127469099328,13.5348578370299,12.9029487935245,0.131886287730194,0.640413505216868,0,5.02529398202486,3.37657566019008,4.43114918552749,3.24091444021034,2.70506193518296,0.931997229126503,0.075726193333184,0,0,0,1.3599426674155,0,0,0,0.280888840263504,0.170430322578058,0,0,0,0,0,0,0.432982082022428,0.506719730950197,0,0.34255163915718,0.517875767294343,0.742210695324124,0,0,0,0.150722640552623,0.470354828542819,0.125666591329675,0.247194967734374,1.01219549843938,0.884610551949874,0.323533699894818,0.220841518460394,0,0,7.02673912827713,9.84399522023239,0.255457055208591,0,0,0.127070227073065,5.69204429738326,1.83000241127451,2.1361239859187,3.47648640384553,4.09144731728529,8.72709787150152,8.27430441645564,0.101839363850316,0.248813941220186,0.252722758433675,0.841767423545896,0.260240885925407,0,0.360124259610698,0.30140963567143,0.680364991513279,0.384341160854549,0.281105173679186,2.32833033665114,0.215567992932842,0,0.175951124163949,0.43839146485515,0.278047249225598,0,0,0.59710280045548,0,0,0,0,0,0,0,0,0.308534225774757,0,0.268273401399619,0.233530684734339,0.329119699826961,0.164167464079095,0.243206428637567,0,0.439100230582101,0.134206418760372,3.15434922846191,0.514523061896422,0,0,0.213288250535234,0,0.257734922644187,0.403367049246685,0,0,0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| ||
|EntrezGene=19258 | |||
|HGNC= | |||
|MCL_coexpression_id=189 | |||
|UniProt=E9Q210,E9PUU9,Q8BQQ4,Q9WU22 | |||
|association_with_transcript=-17bp_to_ENSMUST00000166422,ENSMUST00000168303,NM_019933,uc007ciz.1_5end | |||
|description=CAGE_peak_3_at_Ptpn4_5end | |||
|id=chr1:121733665..121733716,- | |||
|ontology_enrichment_celltype=CL:0000117!2.64e-07!23;CL:0000337!2.64e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.92e-11,23;CL:0000337,5.92e-11,23;CL:0002610,2.15e-08,3;CL:0002614,2.66e-07,3;CL:0000540,7.42e-07,33;CL:0000047,7.42e-07,33;CL:0000031,7.42e-07,33;CL:0000404,7.42e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.96e-16!52;UBERON:0005068!1.96e-16!52;UBERON:0006241!1.96e-16!52;UBERON:0007135!1.96e-16!52;UBERON:0000955!7.36e-16!50;UBERON:0006238!7.36e-16!50;UBERON:0002616!3.44e-15!49;UBERON:0000033!7.35e-15!63;UBERON:0002346!8.47e-15!71;UBERON:0003075!8.47e-15!71;UBERON:0007284!8.47e-15!71;UBERON:0001017!1.85e-14!73;UBERON:0005743!1.85e-14!73;UBERON:0000073!1.27e-13!75;UBERON:0001016!1.27e-13!75;UBERON:0004121!1.35e-13!102;UBERON:0000924!1.35e-13!102;UBERON:0006601!1.35e-13!102;UBERON:0002020!1.81e-12!34;UBERON:0003056!1.59e-11!49;UBERON:0007811!1.86e-10!86;UBERON:0003080!2.36e-10!40;UBERON:0002791!7.58e-10!29;UBERON:0003528!7.58e-10!29;UBERON:0001893!7.58e-10!29;UBERON:0000153!8.37e-10!94;UBERON:0002780!9.13e-10!39;UBERON:0001890!9.13e-10!39;UBERON:0006240!9.13e-10!39;UBERON:0000956!6.89e-08!21;UBERON:0001869!6.89e-08!21;UBERON:0000203!6.89e-08!21;UBERON:0002021!9.98e-08!10;UBERON:0000411!9.98e-08!10;UBERON:0001950!9.98e-08!10;UBERON:0002619!1.34e-07!17;UBERON:0003076!1.88e-07!12;UBERON:0003057!1.88e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.13e-33,54;UBERON:0001017,5.47e-30,73;UBERON:0001049,3.25e-29,52;UBERON:0005068,3.25e-29,52;UBERON:0006241,3.25e-29,52;UBERON:0007135,3.25e-29,52;UBERON:0001016,5.66e-29,75;UBERON:0002346,3.38e-24,64;UBERON:0003075,3.38e-24,64;UBERON:0007284,3.38e-24,64;UBERON:0000955,3.70e-24,47;UBERON:0006238,3.70e-24,47;UBERON:0002020,8.01e-23,34;UBERON:0004121,1.13e-22,95;UBERON:0000924,1.13e-22,95;UBERON:0006601,1.13e-22,95;UBERON:0002616,1.69e-22,46;UBERON:0002021,1.48e-20,10;UBERON:0000411,1.48e-20,10;UBERON:0001950,1.48e-20,10;UBERON:0010371,2.56e-20,73;UBERON:0003528,9.40e-18,29;UBERON:0002791,9.40e-18,29;UBERON:0001893,9.40e-18,29;UBERON:0003080,1.92e-17,40;UBERON:0002780,5.95e-16,39;UBERON:0001890,5.95e-16,39;UBERON:0006240,5.95e-16,39;UBERON:0003056,7.61e-15,49;UBERON:0010314,1.26e-14,92;UBERON:0002619,1.44e-13,17;UBERON:0003076,3.69e-13,12;UBERON:0003057,3.69e-13,12;UBERON:0000956,1.27e-12,21;UBERON:0001869,1.27e-12,21;UBERON:0000203,1.27e-12,21;UBERON:0000025,2.74e-11,114;UBERON:0004111,4.51e-10,122;UBERON:0002950,2.33e-09,4;UBERON:0001891,2.33e-09,4;UBERON:0009616,2.33e-09,4;UBERON:0010286,2.33e-09,4;UBERON:0004684,2.15e-08,3;UBERON:0002275,2.15e-08,3;UBERON:0002240,2.90e-08,6;UBERON:0005174,2.90e-08,6;UBERON:0001137,2.90e-08,6;UBERON:0002038,2.66e-07,3;UBERON:0009663,2.66e-07,3;UBERON:0009661,2.66e-07,3;UBERON:0000125,2.66e-07,3;UBERON:0002308,2.66e-07,3;UBERON:0011216,7.16e-07,194 | |||
|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,0.422366166455,0,0.171217968225505,0.0797721589953364,0.513602189793617,0.262261207256992,0,0,0,0,0,0,2.8064285749853,0,0.522399578277871,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0.664938581433969,0,0,0,0,0,0,0,0.125896817975577,0,0,0.782391344348039,0.218025156380447,0,0.194429899074283,0.139986421625363,0,0.335565212115473,0.725362142011344,0.336093799142464,0,0,0,1.01158230429799,1.05798195854407,0,0,0,0,0,0,0,0,0.829516898467821,0.405017814995072,0,1.71390590642282,2.20868540951614,0.734944795289724,0.191690942036473,0.919218786610021,12.1127469099328,13.5348578370299,12.9029487935245,0.131886287730194,0.640413505216868,0,5.02529398202486,3.37657566019008,4.43114918552749,3.24091444021034,2.70506193518296,0.931997229126503,0.075726193333184,0,0,0,1.3599426674155,0,0,0,0.280888840263504,0.170430322578058,0,0,0,0,0,0,0.432982082022428,0.506719730950197,0,0.34255163915718,0.517875767294343,0.742210695324124,0,0,0,0.150722640552623,0.470354828542819,0.125666591329675,0.247194967734374,1.01219549843938,0.884610551949874,0.323533699894818,0.220841518460394,0,0,7.02673912827713,9.84399522023239,0.255457055208591,0,0,0.127070227073065,5.69204429738326,1.83000241127451,2.1361239859187,3.47648640384553,4.09144731728529,8.72709787150152,8.27430441645564,0.101839363850316,0.248813941220186,0.252722758433675,0.841767423545896,0.260240885925407,0,0.360124259610698,0.30140963567143,0.680364991513279,0.384341160854549,0.281105173679186,2.32833033665114,0.215567992932842,0,0.175951124163949,0.43839146485515,0.278047249225598,0,0,0.59710280045548,0,0,0,0,0,0,0,0,0.308534225774757,0,0.268273401399619,0.233530684734339,0.329119699826961,0.164167464079095,0.243206428637567,0,0.439100230582101,0.134206418760372,3.15434922846191,0.514523061896422,0,0,0.213288250535234,0,0.257734922644187,0.403367049246685,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0.280543279561274,0.0632365371242573,0.442830443938806,0.31399745568275,0.123397163921801,0,0.333690211432188,0,0,0,0,0,0,0.486405680325106,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.189491411770485,0.325929952884052,0.339490171550376,0.469380496577004,0.670025029767263,0.714130922658041,0.585400943573396,0.157635144106191,0.44292937929755,0.637819074629948,0.327726629431476,0,0,0,0,0.491764273019036,0,4.17431533968259,4.45404409050372,0.327869890753351,1.51482556322624,0,0,0.430846795465598,0.238968797952552,0.222798674082394,0.566153061577665,0,0,0.395287777946524,6.74774764485795,0,0.178065603667255,0.325773918707152,0,0,0,0,0.565815239267694,0,0.307435147943927,0,0,0.356497378384721,0.316036757935816,1.05418608574999,0,0.680879211507576,0,0,0.428674070063185,0.532020700926821,0.356737635204141,0.164549020602121,0,0.23467170806371,0.21183207086382,0,0.32977250588296,0.484393280087717,0.241251699712623,0.119372344003136,0.656563598980245,0,3.52308073819968,0.170870880797853,0.206386867963223,0,0,0.410082683163076,0,0,0.139951452323658,0.276399947608848,0,0.158167996790568,0.203319467126849,0.324016022465404,0,0,0.269728692769641,0.165306911450672,0,0.259229946583586,0,2.25477175473676,0.149516546043979,0,0.388902376688095,0,0.168956125490778,0.352071715937262,0,0.104859344425711,0.724752362478018,0.576060012515731,0,0,0.102710957164827,0.129920822977795,0.358053391334963,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.228620419965,0.100826185136841,0.0974578807397524,0.0962118416403295,0.116876902181569,0.226730383615211,0,0.0897138566094757,0.167884616364078,0.19318959403219,0.187682475451182,0,0.643105137237198,0.501572104035363,2.82375921308533,1.84130094602871,5.72895513439397,4.29632955859219,3.42541259885321,5.2877572817279,5.40018000185445,4.5032120322422,7.25027854374727,3.10656187051092,0.31136204275253,0.399024873401031,0.170733605754134,0.243106717068294,0.209613162627982,0.735374033800057,0.44449345560323,0.618105171716683,0,0.505394423527595,0.25347929989024,0.565879024158229,0,0.256100609619477,0.402048282689293,0,0.115884325944855,0.964546102318525,0.412085900803307,0.294397840268795,0,0.177475806159338,0,0.145346416632329,0.470546902076653,0.25384382367503,0.182927972872773,0.263069711437843,0.679020569229309,0,0.237270036248348,0.394017929502254,0.409231043169689,0.154936841185966,0.385813221962283,0.499621155875892,0,0.644613162144895,0.382576664137687,0.661774257358546,0.231867835620421 | |||
|short_description=p3@Ptpn4 | |||
}} |
Revision as of 18:35, 13 September 2013
Short description: | p3@Ptpn4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ptpn4_5end |
Coexpression cluster: | MCL_coexpression_mm9:189 |
Association with transcript: | -17bp_to_ENSMUST00000166422, ENSMUST00000168303, NM_019933, uc007ciz.1_5end |
EntrezGene: | Ptpn4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.92e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.92e-11 | 23 |
raphe nuclei neuron | 2.15e-08 | 3 |
neuron of the substantia nigra | 2.66e-07 | 3 |
neuron | 7.42e-07 | 33 |
neuronal stem cell | 7.42e-07 | 33 |
neuroblast | 7.42e-07 | 33 |
electrically signaling cell | 7.42e-07 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.