FFCP PHASE1:Mm9::chr1:133422413..133422424,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14270|HGNC=|MCL_coexpression_id=30|UniProt=|association_with_transcript=-243bp_to_uc011wrq.1_5end|description=CAGE_peak_9_at_Srgap2_5end|id=chr1:133422413..133422424,-|ontology_enrichment_celltype=CL:0000540!1.66e-10!33;CL:0000047!1.66e-10!33;CL:0000031!1.66e-10!33;CL:0000404!1.66e-10!33;CL:0000393!6.48e-10!39;CL:0000211!6.48e-10!39;CL:0000221!2.26e-09!44;CL:0000133!2.26e-09!44;CL:0000117!2.73e-09!23;CL:0000337!2.73e-09!23;CL:0002319!7.70e-09!43;CL:0000055!4.04e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,9.16e-07,23;CL:0000337,9.16e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.21e-18!75;UBERON:0001016!8.21e-18!75;UBERON:0001017!2.14e-17!73;UBERON:0005743!2.14e-17!73;UBERON:0001049!2.29e-16!52;UBERON:0005068!2.29e-16!52;UBERON:0006241!2.29e-16!52;UBERON:0007135!2.29e-16!52;UBERON:0004121!3.20e-15!102;UBERON:0000924!3.20e-15!102;UBERON:0006601!3.20e-15!102;UBERON:0000955!9.53e-14!50;UBERON:0006238!9.53e-14!50;UBERON:0002020!1.09e-13!34;UBERON:0000033!2.84e-13!63;UBERON:0002616!2.88e-13!49;UBERON:0002346!7.28e-12!71;UBERON:0003075!7.28e-12!71;UBERON:0007284!7.28e-12!71;UBERON:0002791!1.85e-11!29;UBERON:0003528!1.85e-11!29;UBERON:0001893!1.85e-11!29;UBERON:0003080!2.82e-11!40;UBERON:0002780!1.18e-10!39;UBERON:0001890!1.18e-10!39;UBERON:0006240!1.18e-10!39;UBERON:0003056!2.96e-09!49;UBERON:0000153!1.70e-07!94;UBERON:0007811!3.08e-07!86;UBERON:0000956!3.20e-07!21;UBERON:0001869!3.20e-07!21;UBERON:0000203!3.20e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.86e-19,52;UBERON:0005068,1.86e-19,52;UBERON:0006241,1.86e-19,52;UBERON:0007135,1.86e-19,52;UBERON:0002616,5.14e-17,46;UBERON:0000073,8.19e-17,54;UBERON:0000955,1.56e-16,47;UBERON:0006238,1.56e-16,47;UBERON:0010371,4.36e-16,73;UBERON:0002020,2.50e-15,34;UBERON:0002346,1.28e-14,64;UBERON:0003075,1.28e-14,64;UBERON:0007284,1.28e-14,64;UBERON:0003528,2.05e-14,29;UBERON:0002791,2.05e-14,29;UBERON:0001893,2.05e-14,29;UBERON:0001017,3.12e-13,73;UBERON:0001016,1.04e-12,75;UBERON:0003080,1.67e-12,40;UBERON:0004121,9.00e-12,95;UBERON:0000924,9.00e-12,95;UBERON:0006601,9.00e-12,95;UBERON:0002420,1.74e-11,8;UBERON:0007245,1.74e-11,8;UBERON:0010009,1.74e-11,8;UBERON:0010011,1.74e-11,8;UBERON:0000454,1.74e-11,8;UBERON:0002780,3.01e-11,39;UBERON:0001890,3.01e-11,39;UBERON:0006240,3.01e-11,39;UBERON:0000369,4.38e-10,5;UBERON:0002435,4.38e-10,5;UBERON:0000204,4.38e-10,5;UBERON:0010082,4.38e-10,5;UBERON:0003056,2.08e-09,49;UBERON:0010314,2.89e-09,92;UBERON:0003076,3.89e-08,12;UBERON:0003057,3.89e-08,12|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0.0874204024189974,0,0.202475267389826,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.183546752161682,0,0.65407546914134,0.219686182734472,0.388859798148567,0,0,0,0,0,0.257259436035947,0.286533439938757,0,0.404632921719196,0.528990979272033,0.633831403506179,0.338844532069132,0,0.449949858640699,0,0,0,0.384218305321555,1.34796496001021,0.675029691658453,0.420649922702764,0.571301968807607,0.662605622854841,1.83736198822431,1.43768206527355,0.919218786610021,0,0.766124028511126,0.307213066512487,1.18697658957174,1.09785172322892,1.04182674111352,1.3959149950069,1.12552522006336,0.61119299110724,1.17851434189467,1.56608848879013,0.745597783301202,0.605809546665472,0.302286240427142,0.869593466105033,0,0,0,0,0,0.140444420131752,0,0.259786004602869,0,1.40843419776681,1.28326477414318,2.54805239706646,0,0,0,0,0.11418387971906,0.776813650941515,0.148442139064825,0,0,0,0,0.117588707135705,0.125666591329675,0.247194967734374,0.144599356919912,0,0.161766849947409,0.662524555381181,0.484875253135222,0,8.49064311333487,5.86450779077674,0,0.11981512450592,0,0.127070227073065,1.79748767285787,2.28750301409313,3.8952849154988,0.695297280769106,1.02286182932132,0.83115217823824,1.46017136760982,0.305518091550949,0.373220911830279,0,0,0.130120442962704,0.229902104433473,0,0,0.272145996605311,0.384341160854549,0.0937017245597288,0.258703370739016,0.215567992932842,0.189106080167819,0.175951124163949,0,0.834141747676794,0,0.61734640922383,0,0,0,0,0,0,0,0.23674473558521,0,0.308534225774757,0.232533944750408,0,0.583826711835847,0.16455984991348,0.164167464079095,0,0,0.219550115291051,0,0.630869845692382,2.46971069710283,0,0,0.213288250535234,0.464473343720877,0.128867461322093,0.201683524623343,0,0,0,0,0.754005626400808,0,0,0,0,0,0,0,0,0.407302655690628,0.387904974335251,0.140271639780637,0.252946148497029,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0.234690248288502,0,0.238043640886014,0,0.630540576424764,0,0.159454768657487,0.491589944147214,0.345369963731791,0,0,0,0,0,1.9266070798535,1.28932855251423,0,0,0.315508219416257,0.390438744296638,0.430846795465598,0.716906393857656,0.668396022247182,0.283076530788832,0,1.16902343164525,0.395287777946524,0.963963949265421,0,0.178065603667255,0.162886959353576,0.329940245945071,0,0,0.60464711392950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| ||
|EntrezGene=14270 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|UniProt= | |||
|association_with_transcript=-243bp_to_uc011wrq.1_5end | |||
|description=CAGE_peak_9_at_Srgap2_5end | |||
|id=chr1:133422413..133422424,- | |||
|ontology_enrichment_celltype=CL:0000540!1.66e-10!33;CL:0000047!1.66e-10!33;CL:0000031!1.66e-10!33;CL:0000404!1.66e-10!33;CL:0000393!6.48e-10!39;CL:0000211!6.48e-10!39;CL:0000221!2.26e-09!44;CL:0000133!2.26e-09!44;CL:0000117!2.73e-09!23;CL:0000337!2.73e-09!23;CL:0002319!7.70e-09!43;CL:0000055!4.04e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.16e-07,23;CL:0000337,9.16e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.21e-18!75;UBERON:0001016!8.21e-18!75;UBERON:0001017!2.14e-17!73;UBERON:0005743!2.14e-17!73;UBERON:0001049!2.29e-16!52;UBERON:0005068!2.29e-16!52;UBERON:0006241!2.29e-16!52;UBERON:0007135!2.29e-16!52;UBERON:0004121!3.20e-15!102;UBERON:0000924!3.20e-15!102;UBERON:0006601!3.20e-15!102;UBERON:0000955!9.53e-14!50;UBERON:0006238!9.53e-14!50;UBERON:0002020!1.09e-13!34;UBERON:0000033!2.84e-13!63;UBERON:0002616!2.88e-13!49;UBERON:0002346!7.28e-12!71;UBERON:0003075!7.28e-12!71;UBERON:0007284!7.28e-12!71;UBERON:0002791!1.85e-11!29;UBERON:0003528!1.85e-11!29;UBERON:0001893!1.85e-11!29;UBERON:0003080!2.82e-11!40;UBERON:0002780!1.18e-10!39;UBERON:0001890!1.18e-10!39;UBERON:0006240!1.18e-10!39;UBERON:0003056!2.96e-09!49;UBERON:0000153!1.70e-07!94;UBERON:0007811!3.08e-07!86;UBERON:0000956!3.20e-07!21;UBERON:0001869!3.20e-07!21;UBERON:0000203!3.20e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.86e-19,52;UBERON:0005068,1.86e-19,52;UBERON:0006241,1.86e-19,52;UBERON:0007135,1.86e-19,52;UBERON:0002616,5.14e-17,46;UBERON:0000073,8.19e-17,54;UBERON:0000955,1.56e-16,47;UBERON:0006238,1.56e-16,47;UBERON:0010371,4.36e-16,73;UBERON:0002020,2.50e-15,34;UBERON:0002346,1.28e-14,64;UBERON:0003075,1.28e-14,64;UBERON:0007284,1.28e-14,64;UBERON:0003528,2.05e-14,29;UBERON:0002791,2.05e-14,29;UBERON:0001893,2.05e-14,29;UBERON:0001017,3.12e-13,73;UBERON:0001016,1.04e-12,75;UBERON:0003080,1.67e-12,40;UBERON:0004121,9.00e-12,95;UBERON:0000924,9.00e-12,95;UBERON:0006601,9.00e-12,95;UBERON:0002420,1.74e-11,8;UBERON:0007245,1.74e-11,8;UBERON:0010009,1.74e-11,8;UBERON:0010011,1.74e-11,8;UBERON:0000454,1.74e-11,8;UBERON:0002780,3.01e-11,39;UBERON:0001890,3.01e-11,39;UBERON:0006240,3.01e-11,39;UBERON:0000369,4.38e-10,5;UBERON:0002435,4.38e-10,5;UBERON:0000204,4.38e-10,5;UBERON:0010082,4.38e-10,5;UBERON:0003056,2.08e-09,49;UBERON:0010314,2.89e-09,92;UBERON:0003076,3.89e-08,12;UBERON:0003057,3.89e-08,12 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0.0874204024189974,0,0.202475267389826,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.183546752161682,0,0.65407546914134,0.219686182734472,0.388859798148567,0,0,0,0,0,0.257259436035947,0.286533439938757,0,0.404632921719196,0.528990979272033,0.633831403506179,0.338844532069132,0,0.449949858640699,0,0,0,0.384218305321555,1.34796496001021,0.675029691658453,0.420649922702764,0.571301968807607,0.662605622854841,1.83736198822431,1.43768206527355,0.919218786610021,0,0.766124028511126,0.307213066512487,1.18697658957174,1.09785172322892,1.04182674111352,1.3959149950069,1.12552522006336,0.61119299110724,1.17851434189467,1.56608848879013,0.745597783301202,0.605809546665472,0.302286240427142,0.869593466105033,0,0,0,0,0,0.140444420131752,0,0.259786004602869,0,1.40843419776681,1.28326477414318,2.54805239706646,0,0,0,0,0.11418387971906,0.776813650941515,0.148442139064825,0,0,0,0,0.117588707135705,0.125666591329675,0.247194967734374,0.144599356919912,0,0.161766849947409,0.662524555381181,0.484875253135222,0,8.49064311333487,5.86450779077674,0,0.11981512450592,0,0.127070227073065,1.79748767285787,2.28750301409313,3.8952849154988,0.695297280769106,1.02286182932132,0.83115217823824,1.46017136760982,0.305518091550949,0.373220911830279,0,0,0.130120442962704,0.229902104433473,0,0,0.272145996605311,0.384341160854549,0.0937017245597288,0.258703370739016,0.215567992932842,0.189106080167819,0.175951124163949,0,0.834141747676794,0,0.61734640922383,0,0,0,0,0,0,0,0.23674473558521,0,0.308534225774757,0.232533944750408,0,0.583826711835847,0.16455984991348,0.164167464079095,0,0,0.219550115291051,0,0.630869845692382,2.46971069710283,0,0,0.213288250535234,0.464473343720877,0.128867461322093,0.201683524623343,0,0,0,0,0.754005626400808,0,0,0,0,0,0,0,0,0.407302655690628,0.387904974335251,0.140271639780637,0.252946148497029,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0.234690248288502,0,0.238043640886014,0,0.630540576424764,0,0.159454768657487,0.491589944147214,0.345369963731791,0,0,0,0,0,1.9266070798535,1.28932855251423,0,0,0.315508219416257,0.390438744296638,0.430846795465598,0.716906393857656,0.668396022247182,0.283076530788832,0,1.16902343164525,0.395287777946524,0.963963949265421,0,0.178065603667255,0.162886959353576,0.329940245945071,0,0,0.604647113929502,0.188605079755898,0,0.614870295887855,0.775284879504663,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0,0,0.388076051348264,0.643011105094777,0.354680467284547,0.178368817602071,0.329098041204242,0,0.23467170806371,0,0,1.48397627647332,1.29171541356724,0.603129249281559,0.119372344003136,0.164140899745061,0.291480836629851,1.29797711407357,0,0,0,0,0,0.228778173206523,0,0.279902904647316,0,1.90934123603023,0.316335993581135,0.203319467126849,0.216010681643603,0.209088296014469,0.87345025498471,0.269728692769641,0.41326727862668,0,0.259229946583586,0.621339313086926,0,0,0,0,0,0.337912250981556,0.352071715937262,0,0.209718688851422,0,0,0,0,0.205421914329655,0,0,0,0,0,0,0.0762068066549998,0.201652370273681,0.0974578807397524,0,0.116876902181569,0.680191150845634,0,0.0897138566094757,0,0,0.375364950902364,0.36630324853453,0.214368379079066,0,1.12950368523413,1.38097570952153,1.14579102687879,1.20297227640581,0.685082519770642,1.5107877947794,0,0.45032120322422,0.453142408984205,0,0.103787347584177,0.399024873401031,0,0.243106717068294,1.25767897576789,0.183843508450014,0.222246727801615,1.03017528619447,0.320919209591815,0.505394423527595,0.760437899670719,1.13175804831646,1.21733959710847,0.704276676453562,0.804096565378586,0.476293691283074,1.15884325944855,1.15745532278223,0.824171801606613,0.735994600671987,1.02860775715625,0.70990322463735,0.476872379894642,0.436039249896986,0.376437521661322,0.592302255241736,0.73171189149109,1.31534855718921,0.679020569229309,2.24456908663095,0.830445126869219,0.591026894253381,0.818462086339379,0.464810523557898,1.35034627686799,0.249810577937946,0,1.50409737833809,1.53030665655075,0.441182838239031,0.231867835620421 | |||
|short_description=p9@Srgap2 | |||
}} |
Revision as of 18:47, 13 September 2013
Short description: | p9@Srgap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_Srgap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | -243bp_to_uc011wrq.1_5end |
EntrezGene: | Srgap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.16e-07 | 23 |
neuroblast (sensu Vertebrata) | 9.16e-07 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.