FFCP PHASE1:Mm9::chr1:190831735..190831748,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=226823|HGNC=|MCL_coexpression_id=1|UniProt=Q8BFX3|association_with_transcript=-16bp_to_ENSMUST00000085678,NM_172650,uc007eai.1,uc007eaj.1,uc011wyh.1_5end|description=CAGE_peak_2_at_Kctd3_5end|id=chr1:190831735..190831748,-|ontology_enrichment_celltype=CL:0000540!3.47e-16!33;CL:0000047!3.47e-16!33;CL:0000031!3.47e-16!33;CL:0000404!3.47e-16!33;CL:0002319!1.51e-14!43;CL:0000221!2.86e-14!44;CL:0000133!2.86e-14!44;CL:0000117!6.25e-14!23;CL:0000337!6.25e-14!23;CL:0000393!7.47e-14!39;CL:0000211!7.47e-14!39;CL:0002321!1.96e-13!70;CL:0000220!1.96e-13!70;CL:0000055!1.03e-12!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.40e-16,33;CL:0000047,3.40e-16,33;CL:0000031,3.40e-16,33;CL:0000404,3.40e-16,33;CL:0002319,1.31e-14,43;CL:0000221,2.48e-14,44;CL:0000133,2.48e-14,44;CL:0000117,6.15e-14,23;CL:0000337,6.15e-14,23;CL:0000393,7.35e-14,39;CL:0000211,7.35e-14,39;CL:0002321,1.58e-13,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.15e-25!73;UBERON:0005743!1.15e-25!73;UBERON:0000073!4.63e-25!75;UBERON:0001016!4.63e-25!75;UBERON:0001049!1.26e-18!52;UBERON:0005068!1.26e-18!52;UBERON:0006241!1.26e-18!52;UBERON:0007135!1.26e-18!52;UBERON:0000955!3.63e-17!50;UBERON:0006238!3.63e-17!50;UBERON:0002020!6.11e-17!34;UBERON:0002616!7.53e-17!49;UBERON:0004121!1.22e-16!102;UBERON:0000924!1.22e-16!102;UBERON:0006601!1.22e-16!102;UBERON:0000033!6.14e-15!63;UBERON:0002346!7.86e-15!71;UBERON:0003075!7.86e-15!71;UBERON:0007284!7.86e-15!71;UBERON:0002791!6.05e-14!29;UBERON:0003528!6.05e-14!29;UBERON:0001893!6.05e-14!29;UBERON:0003080!1.10e-13!40;UBERON:0002780!4.57e-13!39;UBERON:0001890!4.57e-13!39;UBERON:0006240!4.57e-13!39;UBERON:0003056!5.43e-13!49;UBERON:0000025!7.98e-10!114;UBERON:0000468!1.21e-09!333;UBERON:0000956!1.72e-09!21;UBERON:0001869!1.72e-09!21;UBERON:0000203!1.72e-09!21;UBERON:0004111!1.68e-08!122;UBERON:0002619!1.19e-07!17;UBERON:0000922!1.24e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.69e-26,73;UBERON:0001016,3.91e-25,75;UBERON:0000073,5.87e-20,54;UBERON:0004121,2.36e-19,95;UBERON:0000924,2.36e-19,95;UBERON:0006601,2.36e-19,95;UBERON:0001049,1.08e-18,52;UBERON:0005068,1.08e-18,52;UBERON:0006241,1.08e-18,52;UBERON:0007135,1.08e-18,52;UBERON:0002346,4.08e-18,64;UBERON:0003075,4.08e-18,64;UBERON:0007284,4.08e-18,64;UBERON:0002020,5.98e-17,34;UBERON:0010371,1.19e-15,73;UBERON:0000955,2.36e-15,47;UBERON:0006238,2.36e-15,47;UBERON:0010314,4.35e-15,92;UBERON:0002616,4.83e-15,46;UBERON:0003528,5.95e-14,29;UBERON:0002791,5.95e-14,29;UBERON:0001893,5.95e-14,29;UBERON:0003080,1.08e-13,40;UBERON:0002780,4.50e-13,39;UBERON:0001890,4.50e-13,39;UBERON:0006240,4.50e-13,39;UBERON:0003056,5.35e-13,49;UBERON:0000025,7.35e-10,114;UBERON:0000956,1.70e-09,21;UBERON:0001869,1.70e-09,21;UBERON:0000203,1.70e-09,21;UBERON:0004111,1.46e-08,122;UBERON:0002619,1.18e-07,17|phase1_expression=5.76535849577258,3.14077866875425,1.36499771816861,5.14189159221611,7.01254021924886,6.21153306073992,4.43864017131499,1.29123323441576,0.84473233291,1.63845168425395,1.19852577757853,2.39316476986009,0.684802919724823,0.874204024189974,1.66554880907831,1.01237633694913,0.699561878128147,1.89277299214943,2.05671650408608,1.27316895539409,2.63634199468316,1.29078236561151,0.783599367416806,2.23989391910769,1.14704640533585,2.8711598205751,0.86152399231815,3.01659725760245,2.28028103347649,2.77233142735924,2.66076612786366,4.44521471421742,1.23012957516914,0,2.3108129580102,2.65975432573588,3.67504841272264,0,0.7813353445238,0,0,0.683045484958446,0,1.25896817975577,2.02753862439029,3.12029478674859,0,4.57852828398938,3.95435128922049,4.6663175777828,3.63964696225943,2.87505128729943,1.17447824240415,0,1.00828139742739,2.31533492432352,4.01146815914259,2.57836046138721,7.28339259094552,5.28990979272033,8.87363964908651,2.03306719241479,1.77858959222228,2.6996991518442,0.988866362566974,0.7104801149461,1.49800055259202,4.61061966385865,4.56234294157302,6.61529097825284,5.8890989178387,7.7125765789027,7.28866185140325,4.89963196859816,6.13411014516713,3.67687514644008,20.9220173898839,14.5563565417114,5.68344173048101,7.25374582516066,5.94669683415663,9.89735404057844,18.4260779340911,10.6924895906019,12.2238598221448,8.83885756421003,7.54569908235246,5.59198337475902,2.04460721999597,2.87171928405785,2.02905142091174,2.58127163094416,4.75979933595425,3.2382191498269,1.94932925234301,1.34408066129201,1.26399978118577,1.70430322578058,1.03914401841148,2.12003744706204,2.53518155598025,5.13305909657271,5.09610479413291,0,4.97929394325792,5.06719730950197,3.0331466700887,1.59857431606684,1.03575153458869,1.1875371125186,1.73485326766136,2.13125834818499,1.38369298353635,1.95939432718409,2.23418543557839,3.26733137457156,1.73036477414062,2.74738778147832,2.65383165584962,2.26473589926373,2.42925670306433,1.45462575940567,3.72783522436244,4.68449275218475,5.23616767033638,1.53274233125155,0.958520996047362,1.19980546198682,1.52484272487678,8.98743836428936,5.03250663100489,4.39790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| ||
|EntrezGene=226823 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8BFX3 | |||
|association_with_transcript=-16bp_to_ENSMUST00000085678,NM_172650,uc007eai.1,uc007eaj.1,uc011wyh.1_5end | |||
|description=CAGE_peak_2_at_Kctd3_5end | |||
|id=chr1:190831735..190831748,- | |||
|ontology_enrichment_celltype=CL:0000540!3.47e-16!33;CL:0000047!3.47e-16!33;CL:0000031!3.47e-16!33;CL:0000404!3.47e-16!33;CL:0002319!1.51e-14!43;CL:0000221!2.86e-14!44;CL:0000133!2.86e-14!44;CL:0000117!6.25e-14!23;CL:0000337!6.25e-14!23;CL:0000393!7.47e-14!39;CL:0000211!7.47e-14!39;CL:0002321!1.96e-13!70;CL:0000220!1.96e-13!70;CL:0000055!1.03e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.40e-16,33;CL:0000047,3.40e-16,33;CL:0000031,3.40e-16,33;CL:0000404,3.40e-16,33;CL:0002319,1.31e-14,43;CL:0000221,2.48e-14,44;CL:0000133,2.48e-14,44;CL:0000117,6.15e-14,23;CL:0000337,6.15e-14,23;CL:0000393,7.35e-14,39;CL:0000211,7.35e-14,39;CL:0002321,1.58e-13,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.15e-25!73;UBERON:0005743!1.15e-25!73;UBERON:0000073!4.63e-25!75;UBERON:0001016!4.63e-25!75;UBERON:0001049!1.26e-18!52;UBERON:0005068!1.26e-18!52;UBERON:0006241!1.26e-18!52;UBERON:0007135!1.26e-18!52;UBERON:0000955!3.63e-17!50;UBERON:0006238!3.63e-17!50;UBERON:0002020!6.11e-17!34;UBERON:0002616!7.53e-17!49;UBERON:0004121!1.22e-16!102;UBERON:0000924!1.22e-16!102;UBERON:0006601!1.22e-16!102;UBERON:0000033!6.14e-15!63;UBERON:0002346!7.86e-15!71;UBERON:0003075!7.86e-15!71;UBERON:0007284!7.86e-15!71;UBERON:0002791!6.05e-14!29;UBERON:0003528!6.05e-14!29;UBERON:0001893!6.05e-14!29;UBERON:0003080!1.10e-13!40;UBERON:0002780!4.57e-13!39;UBERON:0001890!4.57e-13!39;UBERON:0006240!4.57e-13!39;UBERON:0003056!5.43e-13!49;UBERON:0000025!7.98e-10!114;UBERON:0000468!1.21e-09!333;UBERON:0000956!1.72e-09!21;UBERON:0001869!1.72e-09!21;UBERON:0000203!1.72e-09!21;UBERON:0004111!1.68e-08!122;UBERON:0002619!1.19e-07!17;UBERON:0000922!1.24e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.69e-26,73;UBERON:0001016,3.91e-25,75;UBERON:0000073,5.87e-20,54;UBERON:0004121,2.36e-19,95;UBERON:0000924,2.36e-19,95;UBERON:0006601,2.36e-19,95;UBERON:0001049,1.08e-18,52;UBERON:0005068,1.08e-18,52;UBERON:0006241,1.08e-18,52;UBERON:0007135,1.08e-18,52;UBERON:0002346,4.08e-18,64;UBERON:0003075,4.08e-18,64;UBERON:0007284,4.08e-18,64;UBERON:0002020,5.98e-17,34;UBERON:0010371,1.19e-15,73;UBERON:0000955,2.36e-15,47;UBERON:0006238,2.36e-15,47;UBERON:0010314,4.35e-15,92;UBERON:0002616,4.83e-15,46;UBERON:0003528,5.95e-14,29;UBERON:0002791,5.95e-14,29;UBERON:0001893,5.95e-14,29;UBERON:0003080,1.08e-13,40;UBERON:0002780,4.50e-13,39;UBERON:0001890,4.50e-13,39;UBERON:0006240,4.50e-13,39;UBERON:0003056,5.35e-13,49;UBERON:0000025,7.35e-10,114;UBERON:0000956,1.70e-09,21;UBERON:0001869,1.70e-09,21;UBERON:0000203,1.70e-09,21;UBERON:0004111,1.46e-08,122;UBERON:0002619,1.18e-07,17 | |||
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| |||
|short_description=p2@Kctd3 | |||
}} |
Revision as of 20:03, 13 September 2013
Short description: | p2@Kctd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Kctd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -16bp_to_ENSMUST00000085678, NM_172650, uc007eai.1, uc007eaj.1, uc011wyh.1_5end |
EntrezGene: | Kctd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.40e-16 | 33 |
neuronal stem cell | 3.40e-16 | 33 |
neuroblast | 3.40e-16 | 33 |
electrically signaling cell | 3.40e-16 | 33 |
neural cell | 1.31e-14 | 43 |
ectodermal cell | 2.48e-14 | 44 |
neurectodermal cell | 2.48e-14 | 44 |
CNS neuron (sensu Vertebrata) | 6.15e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.15e-14 | 23 |
electrically responsive cell | 7.35e-14 | 39 |
electrically active cell | 7.35e-14 | 39 |
embryonic cell | 1.58e-13 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.69e-26 | 73 |
nervous system | 3.91e-25 | 75 |
regional part of nervous system | 5.87e-20 | 54 |
ectoderm-derived structure | 2.36e-19 | 95 |
ectoderm | 2.36e-19 | 95 |
presumptive ectoderm | 2.36e-19 | 95 |
neural tube | 1.08e-18 | 52 |
neural rod | 1.08e-18 | 52 |
future spinal cord | 1.08e-18 | 52 |
neural keel | 1.08e-18 | 52 |
neurectoderm | 4.08e-18 | 64 |
neural plate | 4.08e-18 | 64 |
presumptive neural plate | 4.08e-18 | 64 |
gray matter | 5.98e-17 | 34 |
ecto-epithelium | 1.19e-15 | 73 |
brain | 2.36e-15 | 47 |
future brain | 2.36e-15 | 47 |
structure with developmental contribution from neural crest | 4.35e-15 | 92 |
regional part of brain | 4.83e-15 | 46 |
brain grey matter | 5.95e-14 | 29 |
regional part of telencephalon | 5.95e-14 | 29 |
telencephalon | 5.95e-14 | 29 |
anterior neural tube | 1.08e-13 | 40 |
regional part of forebrain | 4.50e-13 | 39 |
forebrain | 4.50e-13 | 39 |
future forebrain | 4.50e-13 | 39 |
pre-chordal neural plate | 5.35e-13 | 49 |
tube | 7.35e-10 | 114 |
cerebral cortex | 1.70e-09 | 21 |
cerebral hemisphere | 1.70e-09 | 21 |
pallium | 1.70e-09 | 21 |
anatomical conduit | 1.46e-08 | 122 |
regional part of cerebral cortex | 1.18e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.