FFCP PHASE1:Mm9::chr2:37502719..37502749,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20744|HGNC=|MCL_coexpression_id=186|UniProt=|association_with_transcript=0bp_to_ENSMUST00000155831_5end|description=CAGE_peak_4_at_Strbp_5end|id=chr2:37502719..37502749,-|ontology_enrichment_celltype=CL:0000117!6.69e-07!23;CL:0000337!6.69e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,6.24e-08,23;CL:0000337,6.24e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.09e-15!63;UBERON:0003056!1.08e-13!49;UBERON:0007811!1.43e-13!86;UBERON:0000955!5.88e-13!50;UBERON:0006238!5.88e-13!50;UBERON:0002346!7.40e-13!71;UBERON:0003075!7.40e-13!71;UBERON:0007284!7.40e-13!71;UBERON:0001049!1.11e-12!52;UBERON:0005068!1.11e-12!52;UBERON:0006241!1.11e-12!52;UBERON:0007135!1.11e-12!52;UBERON:0002616!1.76e-12!49;UBERON:0002020!3.46e-12!34;UBERON:0000153!1.95e-11!94;UBERON:0003080!3.32e-11!40;UBERON:0002780!8.31e-11!39;UBERON:0001890!8.31e-11!39;UBERON:0006240!8.31e-11!39;UBERON:0002791!8.32e-11!29;UBERON:0003528!8.32e-11!29;UBERON:0001893!8.32e-11!29;UBERON:0001017!2.89e-10!73;UBERON:0005743!2.89e-10!73;UBERON:0000073!2.99e-09!75;UBERON:0001016!2.99e-09!75;UBERON:0000477!8.22e-09!154;UBERON:0000025!1.00e-08!114;UBERON:0004121!1.94e-08!102;UBERON:0000924!1.94e-08!102;UBERON:0006601!1.94e-08!102;UBERON:0000956!2.01e-08!21;UBERON:0001869!2.01e-08!21;UBERON:0000203!2.01e-08!21;UBERON:0004111!2.12e-08!122;UBERON:0002021!3.95e-08!10;UBERON:0000411!3.95e-08!10;UBERON:0001950!3.95e-08!10;UBERON:0000475!8.40e-08!200;UBERON:0000483!3.82e-07!181;UBERON:0002619!5.55e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.27e-16,64;UBERON:0003075,1.27e-16,64;UBERON:0007284,1.27e-16,64;UBERON:0000073,2.34e-16,54;UBERON:0002020,3.54e-15,34;UBERON:0001049,1.13e-14,52;UBERON:0005068,1.13e-14,52;UBERON:0006241,1.13e-14,52;UBERON:0007135,1.13e-14,52;UBERON:0003056,2.05e-14,49;UBERON:0003528,1.21e-13,29;UBERON:0002791,1.21e-13,29;UBERON:0001893,1.21e-13,29;UBERON:0010371,2.78e-13,73;UBERON:0001017,3.05e-13,73;UBERON:0000955,4.80e-13,47;UBERON:0006238,4.80e-13,47;UBERON:0002616,1.90e-12,46;UBERON:0001016,1.91e-12,75;UBERON:0003080,6.54e-12,40;UBERON:0010314,1.92e-11,92;UBERON:0002780,2.14e-11,39;UBERON:0001890,2.14e-11,39;UBERON:0006240,2.14e-11,39;UBERON:0004121,3.61e-11,95;UBERON:0000924,3.61e-11,95;UBERON:0006601,3.61e-11,95;UBERON:0000956,5.27e-11,21;UBERON:0001869,5.27e-11,21;UBERON:0000203,5.27e-11,21;UBERON:0002021,1.38e-10,10;UBERON:0000411,1.38e-10,10;UBERON:0001950,1.38e-10,10;UBERON:0002619,4.96e-09,17;UBERON:0011216,2.16e-07,194;UBERON:0000025,2.34e-07,114;UBERON:0000483,5.25e-07,174|phase1_expression=1.60148847104794,0,0,0.60492842261366,0.500895729946347,1.00727563147134,0.233612640595526,0.129123323441576,0.563154888606667,0,0.171217968225505,0.239316476986009,0.342401459862411,0.0874204024189974,0,0.404950534779652,0,0.157731082679119,0.959801035240171,0.84877930359606,1.44573593256819,0.794327609607082,0,0.799962113967033,1.14704640533585,0.57423196411502,0.430761996159075,0.861884930743556,0.950117097281869,0,0.443461021310609,0,0,0,0,0.332469290716985,0.204169356262369,0,0,0.523523743973798,2.35292595212406,0,0,0.251793635951155,0.101376931219515,0.367093504323363,0,0,0,0.194429899074283,0,0,0.671130424230945,0,0.336093799142464,0.514518872071894,0,0.515672092277442,1.01158230429799,1.5869729378161,0,0,0,0,0,0,0.299600110518405,0,3.83651565541367,2.8351247049655,1.05162480675691,0.571301968807607,1.10434270475807,1.5923803897944,1.53352753629178,0.919218786610021,8.8092704799511,7.15049093277051,11.5204899942183,0.791317726381163,2.56165402086747,2.08365348222704,2.51264699101243,1.12552522006336,5.95913166329559,9.1334861496837,5.97961059356232,2.79599168737951,0.075726193333184,0,0,0,0.679971333707751,3.77792234146472,3.24888208723835,1.34408066129201,0.702222100658759,0.170430322578058,0.259786004602869,0.35333957451034,0.845060518660083,0,0,0,1.08245520505607,1.52015919285059,2.02209778005913,1.37020655662872,0.258937883647172,0,0.346970653532272,0.608930956624282,0.691846491768175,1.20578112442098,1.17588707135705,0.251333182659351,0.247194967734374,0.144599356919912,0,0.323533699894818,0.662524555381181,0,0,1.17112318804619,2.93225389538837,1.27728527604296,0.11981512450592,0,0.127070227073065,2.24685959107234,1.37250180845588,2.89005009859588,2.60736480288415,3.83573185995496,3.94797284663164,1.94689515681309,1.2220723662038,0.373220911830279,0.758168275301024,1.26265113531884,2.34216797332867,0.689706313300419,1.62055916824814,3.16480117455002,1.76894897793452,3.33095672740609,0.655912071918102,4.39795730256327,0.431135985865684,0.189106080167819,0.351902248327898,0,1.66828349535359,0.696504333044333,0,0.995171334092466,0,0,0,0.207125772535502,0.703578179943289,1.2604344302271,0.473489471170421,0.983821158737019,2.77680803197281,2.09280550275367,0.536546802799238,0.817357396570186,1.81015834904829,0.820837320395476,0.486412857275134,0.292399974850665,1.75640092232841,0.268412837520744,1.68231958851302,4.21908910755066,0.330418782983798,0.528901133327089,1.06644125267617,0.696710015581316,0.128867461322093,0.605050573870028,0,0,1.42358718463353,0.988193728344065,0.502670417600539,0.596869416123452,0.38992817423824,0.898819408654221,3.8904848977445,0.796565093017469,0.189667900953082,1.37098215131675,0,3.05476991767971,2.32742984601151,0.911765658574141,0.822074982615345,1.91893192373483,4.23896565171712,0.616985819609003,0,0.166845105716094,0.393117990226406,0.449724224769707,0,0,0,0.863088412352432,2.59416362840057,0.823684239564244,24.4405951096503,0.744281895337007,0.936113019343682,1.51547326768267,0.538192240565737,1.4473305640901,0.369506380333209,0.189491411770485,0.325929952884052,1.18821560042632,1.17345124144251,0.670025029767263,0.952174563544055,1.36593553500459,0.472905432318573,0.664394068946325,1.11618338060241,2.29408640602033,2.07221978239075,0.867894351489069,0,0,0.491764273019036,0.275936746304732,1.60550589987792,1.87538698547525,0.327869890753351,0,0.315508219416257,0,1.50796378412959,0.238968797952552,1.33679204449436,0,0.809621403349789,0.876767573733936,0.395287777946524,2.89189184779626,0.141940085208269,0.178065603667255,1.46598263418218,0.329940245945071,0,0.971122544619926,0.302323556964751,0.754420319023592,0,0,0.258428293168221,1.09060118843252,0.712994756769443,0.632073515871632,0,0,0.340439605753788,1.26042765821917,0.776152102696527,0.428674070063185,0.886701168211368,1.60531935841864,0.987294123612726,0.608929898229199,0,0,0.661585194164886,0.32977250588296,0.161464426695906,0.120625849856312,0.238744688006273,0.656563598980245,2.91480836629851,2.78137953015765,0.341741761595705,0,0.370389054739423,2.44878994106098,1.36694227721025,1.37266903923914,0.169978429993855,0.139951452323658,0.414599921413271,0,0.316335993581135,0,1.18805874903981,1.46361807210128,1.31017538247707,1.34864346384821,0.247960367176008,0.26175594198403,1.42576470620972,0.621339313086926,6.76431526421028,0.747582730219894,0,0.194451188344048,0.258319646955462,1.85851738039856,0.938857909166032,1.69265700297135,0.943734099831398,11.1128695579963,6.04863013141517,0,1.01362607645082,2.05421914329655,1.42912905275575,0.716106782669926,0.993406773906324,1.9231271923195,2.36303243479324,3.02899349844443,2.057583779685,2.92395936896837,2.24153125701431,2.98256709085021,1.5193997283604,0.226730383615211,0.443971906748129,1.07656627931371,0.671538465456314,0,0,0.183151624267265,0.643105137237198,1.00314420807073,21.4605700194485,14.7304075682297,14.3223878359849,6.8741272937475,11.6464028361009,15.107877947794,10.1253375034771,13.0593148935024,14.5005570874945,23.8169743405837,1.14166082342594,0,0.512200817262403,1.21553358534147,0.209613162627982,0.551530525350042,0.666740183404846,1.03017528619447,0,0.252697211763798,0.50695859978048,0.188626341386076,0.561849044819294,0.384150914429216,0.516919220600519,0.476293691283074,0.579421629724277,0,0.412085900803307,0.588795680537589,2.05721551431249,0.70990322463735,1.1921809497366,1.30811774969096,0.564656282491984,0.676916863133412,0.914639864363863,1.57841826862706,0.950628796921032,0.561142271657738,0.711810108745045,1.18205378850676,1.22769312950907,0.464810523557898,0.385813221962283,1.49886346762768,0,0.429742108096597,0.191288332068843,0,0.463735671240843|short_description=p4@Strbp}} | ||
|EntrezGene=20744 | |||
|HGNC= | |||
|MCL_coexpression_id=186 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000155831_5end | |||
|description=CAGE_peak_4_at_Strbp_5end | |||
|id=chr2:37502719..37502749,- | |||
|ontology_enrichment_celltype=CL:0000117!6.69e-07!23;CL:0000337!6.69e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.24e-08,23;CL:0000337,6.24e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.09e-15!63;UBERON:0003056!1.08e-13!49;UBERON:0007811!1.43e-13!86;UBERON:0000955!5.88e-13!50;UBERON:0006238!5.88e-13!50;UBERON:0002346!7.40e-13!71;UBERON:0003075!7.40e-13!71;UBERON:0007284!7.40e-13!71;UBERON:0001049!1.11e-12!52;UBERON:0005068!1.11e-12!52;UBERON:0006241!1.11e-12!52;UBERON:0007135!1.11e-12!52;UBERON:0002616!1.76e-12!49;UBERON:0002020!3.46e-12!34;UBERON:0000153!1.95e-11!94;UBERON:0003080!3.32e-11!40;UBERON:0002780!8.31e-11!39;UBERON:0001890!8.31e-11!39;UBERON:0006240!8.31e-11!39;UBERON:0002791!8.32e-11!29;UBERON:0003528!8.32e-11!29;UBERON:0001893!8.32e-11!29;UBERON:0001017!2.89e-10!73;UBERON:0005743!2.89e-10!73;UBERON:0000073!2.99e-09!75;UBERON:0001016!2.99e-09!75;UBERON:0000477!8.22e-09!154;UBERON:0000025!1.00e-08!114;UBERON:0004121!1.94e-08!102;UBERON:0000924!1.94e-08!102;UBERON:0006601!1.94e-08!102;UBERON:0000956!2.01e-08!21;UBERON:0001869!2.01e-08!21;UBERON:0000203!2.01e-08!21;UBERON:0004111!2.12e-08!122;UBERON:0002021!3.95e-08!10;UBERON:0000411!3.95e-08!10;UBERON:0001950!3.95e-08!10;UBERON:0000475!8.40e-08!200;UBERON:0000483!3.82e-07!181;UBERON:0002619!5.55e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.27e-16,64;UBERON:0003075,1.27e-16,64;UBERON:0007284,1.27e-16,64;UBERON:0000073,2.34e-16,54;UBERON:0002020,3.54e-15,34;UBERON:0001049,1.13e-14,52;UBERON:0005068,1.13e-14,52;UBERON:0006241,1.13e-14,52;UBERON:0007135,1.13e-14,52;UBERON:0003056,2.05e-14,49;UBERON:0003528,1.21e-13,29;UBERON:0002791,1.21e-13,29;UBERON:0001893,1.21e-13,29;UBERON:0010371,2.78e-13,73;UBERON:0001017,3.05e-13,73;UBERON:0000955,4.80e-13,47;UBERON:0006238,4.80e-13,47;UBERON:0002616,1.90e-12,46;UBERON:0001016,1.91e-12,75;UBERON:0003080,6.54e-12,40;UBERON:0010314,1.92e-11,92;UBERON:0002780,2.14e-11,39;UBERON:0001890,2.14e-11,39;UBERON:0006240,2.14e-11,39;UBERON:0004121,3.61e-11,95;UBERON:0000924,3.61e-11,95;UBERON:0006601,3.61e-11,95;UBERON:0000956,5.27e-11,21;UBERON:0001869,5.27e-11,21;UBERON:0000203,5.27e-11,21;UBERON:0002021,1.38e-10,10;UBERON:0000411,1.38e-10,10;UBERON:0001950,1.38e-10,10;UBERON:0002619,4.96e-09,17;UBERON:0011216,2.16e-07,194;UBERON:0000025,2.34e-07,114;UBERON:0000483,5.25e-07,174 | |||
|phase1_expression=1.60148847104794,0,0,0.60492842261366,0.500895729946347,1.00727563147134,0.233612640595526,0.129123323441576,0.563154888606667,0,0.171217968225505,0.239316476986009,0.342401459862411,0.0874204024189974,0,0.404950534779652,0,0.157731082679119,0.959801035240171,0.84877930359606,1.44573593256819,0.794327609607082,0,0.799962113967033,1.14704640533585,0.57423196411502,0.430761996159075,0.861884930743556,0.950117097281869,0,0.443461021310609,0,0,0,0,0.332469290716985,0.204169356262369,0,0,0.523523743973798,2.35292595212406,0,0,0.251793635951155,0.101376931219515,0.367093504323363,0,0,0,0.194429899074283,0,0,0.671130424230945,0,0.336093799142464,0.514518872071894,0,0.515672092277442,1.01158230429799,1.5869729378161,0,0,0,0,0,0,0.299600110518405,0,3.83651565541367,2.8351247049655,1.05162480675691,0.571301968807607,1.10434270475807,1.5923803897944,1.53352753629178,0.919218786610021,8.8092704799511,7.15049093277051,11.5204899942183,0.791317726381163,2.56165402086747,2.08365348222704,2.51264699101243,1.12552522006336,5.95913166329559,9.1334861496837,5.97961059356232,2.79599168737951,0.075726193333184,0,0,0,0.679971333707751,3.77792234146472,3.24888208723835,1.34408066129201,0.702222100658759,0.170430322578058,0.259786004602869,0.35333957451034,0.845060518660083,0,0,0,1.08245520505607,1.52015919285059,2.02209778005913,1.37020655662872,0.258937883647172,0,0.346970653532272,0.608930956624282,0.691846491768175,1.20578112442098,1.17588707135705,0.251333182659351,0.247194967734374,0.144599356919912,0,0.323533699894818,0.662524555381181,0,0,1.17112318804619,2.93225389538837,1.27728527604296,0.11981512450592,0,0.127070227073065,2.24685959107234,1.37250180845588,2.89005009859588,2.60736480288415,3.83573185995496,3.94797284663164,1.94689515681309,1.2220723662038,0.373220911830279,0.758168275301024,1.26265113531884,2.34216797332867,0.689706313300419,1.62055916824814,3.16480117455002,1.76894897793452,3.33095672740609,0.655912071918102,4.39795730256327,0.431135985865684,0.189106080167819,0.351902248327898,0,1.66828349535359,0.696504333044333,0,0.995171334092466,0,0,0,0.207125772535502,0.703578179943289,1.2604344302271,0.473489471170421,0.983821158737019,2.77680803197281,2.09280550275367,0.536546802799238,0.817357396570186,1.81015834904829,0.820837320395476,0.486412857275134,0.292399974850665,1.75640092232841,0.268412837520744,1.68231958851302,4.21908910755066,0.330418782983798,0.528901133327089,1.06644125267617,0.696710015581316,0.128867461322093,0.605050573870028,0,0,1.42358718463353,0.988193728344065,0.502670417600539,0.596869416123452,0.38992817423824,0.898819408654221,3.8904848977445,0.796565093017469,0.189667900953082,1.37098215131675,0,3.05476991767971,2.32742984601151,0.911765658574141,0.822074982615345,1.91893192373483,4.23896565171712,0.616985819609003,0,0.166845105716094,0.393117990226406,0.449724224769707,0,0,0,0.863088412352432,2.59416362840057,0.823684239564244,24.4405951096503,0.744281895337007,0.936113019343682,1.51547326768267,0.538192240565737,1.4473305640901,0.369506380333209,0.189491411770485,0.325929952884052,1.18821560042632,1.17345124144251,0.670025029767263,0.952174563544055,1.36593553500459,0.472905432318573,0.664394068946325,1.11618338060241,2.29408640602033,2.07221978239075,0.867894351489069,0,0,0.491764273019036,0.275936746304732,1.60550589987792,1.87538698547525,0.327869890753351,0,0.315508219416257,0,1.50796378412959,0.238968797952552,1.33679204449436,0,0.809621403349789,0.876767573733936,0.395287777946524,2.89189184779626,0.141940085208269,0.178065603667255,1.46598263418218,0.329940245945071,0,0.971122544619926,0.302323556964751,0.754420319023592,0,0,0.258428293168221,1.09060118843252,0.712994756769443,0.632073515871632,0,0,0.340439605753788,1.26042765821917,0.776152102696527,0.428674070063185,0.886701168211368,1.60531935841864,0.987294123612726,0.608929898229199,0,0,0.661585194164886,0.32977250588296,0.161464426695906,0.120625849856312,0.238744688006273,0.656563598980245,2.91480836629851,2.78137953015765,0.341741761595705,0,0.370389054739423,2.44878994106098,1.36694227721025,1.37266903923914,0.169978429993855,0.139951452323658,0.414599921413271,0,0.316335993581135,0,1.18805874903981,1.46361807210128,1.31017538247707,1.34864346384821,0.247960367176008,0.26175594198403,1.42576470620972,0.621339313086926,6.76431526421028,0.747582730219894,0,0.194451188344048,0.258319646955462,1.85851738039856,0.938857909166032,1.69265700297135,0.943734099831398,11.1128695579963,6.04863013141517,0,1.01362607645082,2.05421914329655,1.42912905275575,0.716106782669926,0.993406773906324,1.9231271923195,2.36303243479324,3.02899349844443,2.057583779685,2.92395936896837,2.24153125701431,2.98256709085021,1.5193997283604,0.226730383615211,0.443971906748129,1.07656627931371,0.671538465456314,0,0,0.183151624267265,0.643105137237198,1.00314420807073,21.4605700194485,14.7304075682297,14.3223878359849,6.8741272937475,11.6464028361009,15.107877947794,10.1253375034771,13.0593148935024,14.5005570874945,23.8169743405837,1.14166082342594,0,0.512200817262403,1.21553358534147,0.209613162627982,0.551530525350042,0.666740183404846,1.03017528619447,0,0.252697211763798,0.50695859978048,0.188626341386076,0.561849044819294,0.384150914429216,0.516919220600519,0.476293691283074,0.579421629724277,0,0.412085900803307,0.588795680537589,2.05721551431249,0.70990322463735,1.1921809497366,1.30811774969096,0.564656282491984,0.676916863133412,0.914639864363863,1.57841826862706,0.950628796921032,0.561142271657738,0.711810108745045,1.18205378850676,1.22769312950907,0.464810523557898,0.385813221962283,1.49886346762768,0,0.429742108096597,0.191288332068843,0,0.463735671240843 | |||
|short_description=p4@Strbp | |||
}} | |||
Revision as of 23:58, 13 September 2013
| Short description: | p4@Strbp |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Strbp_5end |
| Coexpression cluster: | MCL_coexpression_mm9:186 |
| Association with transcript: | 0bp_to_ENSMUST00000155831_5end |
| EntrezGene: | Strbp |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 6.24e-08 | 23 |
| neuroblast (sensu Vertebrata) | 6.24e-08 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
