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FFCP PHASE1:Mm9::chr2:71819241..71819342,+: Difference between revisions

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{{FFCP
{{FFCP|EntrezGene=56508|HGNC=|MCL_coexpression_id=1|UniProt=Q9EQZ6,E9Q145,A2ASW4,Q571A8,Q9CS95,A2ASW3|association_with_transcript=0bp_to_ENSMUST00000090826,ENSMUST00000149421,ENSMUST00000150234,ENSMUST00000171878,NM_001204165,NM_001204167,NM_019688,uc008kbl.2,uc008kbm.2,uc008kbn.2,uc008kbo.2_5end|description=CAGE_peak_1_at_Rapgef4_5end|id=chr2:71819241..71819342,+|ontology_enrichment_celltype=CL:0000117!3.34e-08!23;CL:0000337!3.34e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.21e-08,23;CL:0000337,1.21e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.26e-18!71;UBERON:0003075!2.26e-18!71;UBERON:0007284!2.26e-18!71;UBERON:0001049!6.49e-18!52;UBERON:0005068!6.49e-18!52;UBERON:0006241!6.49e-18!52;UBERON:0007135!6.49e-18!52;UBERON:0000955!4.51e-17!50;UBERON:0006238!4.51e-17!50;UBERON:0004121!8.87e-17!102;UBERON:0000924!8.87e-17!102;UBERON:0006601!8.87e-17!102;UBERON:0002616!1.80e-16!49;UBERON:0000033!3.60e-16!63;UBERON:0000073!6.63e-15!75;UBERON:0001016!6.63e-15!75;UBERON:0001017!7.34e-15!73;UBERON:0005743!7.34e-15!73;UBERON:0003056!1.32e-13!49;UBERON:0003080!1.33e-13!40;UBERON:0002020!3.90e-13!34;UBERON:0002780!5.42e-13!39;UBERON:0001890!5.42e-13!39;UBERON:0006240!5.42e-13!39;UBERON:0002791!1.19e-10!29;UBERON:0003528!1.19e-10!29;UBERON:0001893!1.19e-10!29;UBERON:0002021!9.87e-08!10;UBERON:0000411!9.87e-08!10;UBERON:0001950!9.87e-08!10;UBERON:0002619!3.12e-07!17;UBERON:0000956!7.86e-07!21;UBERON:0001869!7.86e-07!21;UBERON:0000203!7.86e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.74e-19,54;UBERON:0001049,1.16e-17,52;UBERON:0005068,1.16e-17,52;UBERON:0006241,1.16e-17,52;UBERON:0007135,1.16e-17,52;UBERON:0010314,8.66e-16,92;UBERON:0002346,2.27e-15,64;UBERON:0003075,2.27e-15,64;UBERON:0007284,2.27e-15,64;UBERON:0000955,7.55e-15,47;UBERON:0006238,7.55e-15,47;UBERON:0001016,2.75e-14,75;UBERON:0010371,3.14e-14,73;UBERON:0002616,3.16e-14,46;UBERON:0001017,3.20e-14,73;UBERON:0002020,2.11e-13,34;UBERON:0003080,3.66e-13,40;UBERON:0004121,6.86e-13,95;UBERON:0000924,6.86e-13,95;UBERON:0006601,6.86e-13,95;UBERON:0003056,7.67e-13,49;UBERON:0002780,1.62e-12,39;UBERON:0001890,1.62e-12,39;UBERON:0006240,1.62e-12,39;UBERON:0003528,1.05e-10,29;UBERON:0002791,1.05e-10,29;UBERON:0001893,1.05e-10,29;UBERON:0002021,2.25e-08,10;UBERON:0000411,2.25e-08,10;UBERON:0001950,2.25e-08,10;UBERON:0002619,3.51e-07,17|phase1_expression=1.44133962394315,0.697950815278722,2.72999543633722,0.60492842261366,0,1.00727563147134,1.40167584357315,0,0,0,0,0.159544317990673,0,0,0,0.404950534779652,0,0,0,0,31.3809740657447,0,0,1.59992422793407,1.37645568640302,0,0.86152399231815,0.646413698057667,0,0,0,0.635030673459631,0.61506478758457,0,1.1554064790051,1.49611180822643,2.24586291888606,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0.659058548203415,0.58328969722285,1.25987779462826,0,0,0,0,0,0,0,7.48570905180512,11.1088105647127,7.60597684207415,0,0,0,0,0.7104801149461,0.599200221036809,1.53687322128622,0.518448061542388,1.21505344498522,1.05162480675691,29.136400409188,20.0990372265968,2.08234358665422,1.43768206527355,2.75765635983006,71.5753226496027,112.620232191136,81.411462625809,5.80299666012853,9.42322729104819,7.8137005583514,79.0087887173908,61.3411244934531,78.3855011095036,32.9984015730508,35.8776635613739,9.13357284543973,1.13589289999776,2.79614772395106,1.44932244350839,0,0,0,0,0,6.03911006566533,0,0,0,0.845060518660083,0,0,0,0,0,0,6.2801133845483,0,33.1025970114559,1.21439728736295,1.82679286987285,4.15107895060905,6.0289056221049,6.58496759959947,15.4569907335501,0.494389935468748,0,0,0.808834249737046,0.662524555381181,0.969750506270444,1.86391761218122,139.94922097152,120.431856417737,0.255457055208591,0.11981512450592,0.599902730993408,0.381210681219194,106.051772698614,221.430291764215,10.4293112253677,243.527872589379,174.142226441955,89.76443524973,97.9937228929256,3.05518091550949,1.7416975885413,3.0326731012041,5.26104639716185,0.520481771850815,1.14951052216736,0.540186389416048,1.9591626318643,3.33378845841506,2.69038812598185,1.96773621575431,7.24369438069244,0.215567992932842,0.378212160335639,0.351902248327898,0.43839146485515,1.66828349535359,1.0447564995665,2.46938563689532,0,0,0,0.284163499395593,1.86413195281952,1.40715635988658,0.540186184383045,0.473489471170421,1.18058539048442,0.771335564436891,1.39520366850245,1.3413670069981,2.80236821681207,1.97471819896177,4.26835406605648,6.89084881139774,6.43279944671462,9.22110484222413,7.64976586934119,196.410811958895,9.46722433889417,0.660837565967596,0.793351699990633,0.426576501070468,0.464473343720877,0.77320476793256,1.00841762311671,1.33426826306922,0.951128130562796,0.474529061544512,0.988193728344065,1.00534083520108,1.59165177632921,1.9496408711912,1.79763881730844,1.51296634912286,2.38969527905241,0.758671603812327,0.913988100877831,0,1.4255592949172,1.55161989734101,1.33258057791605,0.758838445491087,0.442830443938806,0.31399745568275,0.123397163921801,0,0.500535317148282,0.393117990226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|EntrezGene=56508
|HGNC=
|MCL_coexpression_id=1
|UniProt=Q9EQZ6,E9Q145,A2ASW4,Q571A8,Q9CS95,A2ASW3
|association_with_transcript=0bp_to_ENSMUST00000090826,ENSMUST00000149421,ENSMUST00000150234,ENSMUST00000171878,NM_001204165,NM_001204167,NM_019688,uc008kbl.2,uc008kbm.2,uc008kbn.2,uc008kbo.2_5end
|description=CAGE_peak_1_at_Rapgef4_5end
|id=chr2:71819241..71819342,+
|ontology_enrichment_celltype=CL:0000117!3.34e-08!23;CL:0000337!3.34e-08!23
|ontology_enrichment_celltype_v019_2=CL:0000117,1.21e-08,23;CL:0000337,1.21e-08,23
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002346!2.26e-18!71;UBERON:0003075!2.26e-18!71;UBERON:0007284!2.26e-18!71;UBERON:0001049!6.49e-18!52;UBERON:0005068!6.49e-18!52;UBERON:0006241!6.49e-18!52;UBERON:0007135!6.49e-18!52;UBERON:0000955!4.51e-17!50;UBERON:0006238!4.51e-17!50;UBERON:0004121!8.87e-17!102;UBERON:0000924!8.87e-17!102;UBERON:0006601!8.87e-17!102;UBERON:0002616!1.80e-16!49;UBERON:0000033!3.60e-16!63;UBERON:0000073!6.63e-15!75;UBERON:0001016!6.63e-15!75;UBERON:0001017!7.34e-15!73;UBERON:0005743!7.34e-15!73;UBERON:0003056!1.32e-13!49;UBERON:0003080!1.33e-13!40;UBERON:0002020!3.90e-13!34;UBERON:0002780!5.42e-13!39;UBERON:0001890!5.42e-13!39;UBERON:0006240!5.42e-13!39;UBERON:0002791!1.19e-10!29;UBERON:0003528!1.19e-10!29;UBERON:0001893!1.19e-10!29;UBERON:0002021!9.87e-08!10;UBERON:0000411!9.87e-08!10;UBERON:0001950!9.87e-08!10;UBERON:0002619!3.12e-07!17;UBERON:0000956!7.86e-07!21;UBERON:0001869!7.86e-07!21;UBERON:0000203!7.86e-07!21
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.74e-19,54;UBERON:0001049,1.16e-17,52;UBERON:0005068,1.16e-17,52;UBERON:0006241,1.16e-17,52;UBERON:0007135,1.16e-17,52;UBERON:0010314,8.66e-16,92;UBERON:0002346,2.27e-15,64;UBERON:0003075,2.27e-15,64;UBERON:0007284,2.27e-15,64;UBERON:0000955,7.55e-15,47;UBERON:0006238,7.55e-15,47;UBERON:0001016,2.75e-14,75;UBERON:0010371,3.14e-14,73;UBERON:0002616,3.16e-14,46;UBERON:0001017,3.20e-14,73;UBERON:0002020,2.11e-13,34;UBERON:0003080,3.66e-13,40;UBERON:0004121,6.86e-13,95;UBERON:0000924,6.86e-13,95;UBERON:0006601,6.86e-13,95;UBERON:0003056,7.67e-13,49;UBERON:0002780,1.62e-12,39;UBERON:0001890,1.62e-12,39;UBERON:0006240,1.62e-12,39;UBERON:0003528,1.05e-10,29;UBERON:0002791,1.05e-10,29;UBERON:0001893,1.05e-10,29;UBERON:0002021,2.25e-08,10;UBERON:0000411,2.25e-08,10;UBERON:0001950,2.25e-08,10;UBERON:0002619,3.51e-07,17
|phase1_expression=1.44133962394315,0.697950815278722,2.72999543633722,0.60492842261366,0,1.00727563147134,1.40167584357315,0,0,0,0,0.159544317990673,0,0,0,0.404950534779652,0,0,0,0,31.3809740657447,0,0,1.59992422793407,1.37645568640302,0,0.86152399231815,0.646413698057667,0,0,0,0.635030673459631,0.61506478758457,0,1.1554064790051,1.49611180822643,2.24586291888606,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0.659058548203415,0.58328969722285,1.25987779462826,0,0,0,0,0,0,0,7.48570905180512,11.1088105647127,7.60597684207415,0,0,0,0,0.7104801149461,0.599200221036809,1.53687322128622,0.518448061542388,1.21505344498522,1.05162480675691,29.136400409188,20.0990372265968,2.08234358665422,1.43768206527355,2.75765635983006,71.5753226496027,112.620232191136,81.411462625809,5.80299666012853,9.42322729104819,7.8137005583514,79.0087887173908,61.3411244934531,78.3855011095036,32.9984015730508,35.8776635613739,9.13357284543973,1.13589289999776,2.79614772395106,1.44932244350839,0,0,0,0,0,6.03911006566533,0,0,0,0.845060518660083,0,0,0,0,0,0,6.2801133845483,0,33.1025970114559,1.21439728736295,1.82679286987285,4.15107895060905,6.0289056221049,6.58496759959947,15.4569907335501,0.494389935468748,0,0,0.808834249737046,0.662524555381181,0.969750506270444,1.86391761218122,139.94922097152,120.431856417737,0.255457055208591,0.11981512450592,0.599902730993408,0.381210681219194,106.051772698614,221.430291764215,10.4293112253677,243.527872589379,174.142226441955,89.76443524973,97.9937228929256,3.05518091550949,1.7416975885413,3.0326731012041,5.26104639716185,0.520481771850815,1.14951052216736,0.540186389416048,1.9591626318643,3.33378845841506,2.69038812598185,1.96773621575431,7.24369438069244,0.215567992932842,0.378212160335639,0.351902248327898,0.43839146485515,1.66828349535359,1.0447564995665,2.46938563689532,0,0,0,0.284163499395593,1.86413195281952,1.40715635988658,0.540186184383045,0.473489471170421,1.18058539048442,0.771335564436891,1.39520366850245,1.3413670069981,2.80236821681207,1.97471819896177,4.26835406605648,6.89084881139774,6.43279944671462,9.22110484222413,7.64976586934119,196.410811958895,9.46722433889417,0.660837565967596,0.793351699990633,0.426576501070468,0.464473343720877,0.77320476793256,1.00841762311671,1.33426826306922,0.951128130562796,0.474529061544512,0.988193728344065,1.00534083520108,1.59165177632921,1.9496408711912,1.79763881730844,1.51296634912286,2.38969527905241,0.758671603812327,0.913988100877831,0,1.4255592949172,1.55161989734101,1.33258057791605,0.758838445491087,0.442830443938806,0.31399745568275,0.123397163921801,0,0.500535317148282,0.393117990226406,0.449724224769707,1.21716072833102,0.964708639009667,0.50925170356284,0,0.324270453550071,0,0,0,0,0,0,0,1.66277871149944,0.947457058852424,0.977789858652155,1.01847051465113,1.17345124144251,1.34005005953453,1.19021820443007,2.34160377429359,1.41871629695572,0.221464689648775,0.637819074629948,0.491589944147214,0.863424909329478,1.88043776155965,0,0,1.47529281905711,3.58717770196152,84.4496103335786,74.3122092994568,0,0,0.315508219416257,0.390438744296638,0.430846795465598,0,0.445597348164788,0.566153061577665,0,0.292255857911312,0.395287777946524,81.615614371139,2.6968616189571,0.890328018336276,2.28041743095006,3.95928295134085,9.2921596837974,1.94224508923985,3.32555912661226,4.71512699389745,2.36241514304618,5.84126781093462,10.5955600198971,8.72480950746013,7.12994756769443,7.58488219045958,4.21674434299995,3.09406629744561,60.938689429928,0.900305470156551,0.776152102696527,1.28602221018955,4.78818630834139,6.59964625127661,10.5311373185357,7.91608867697958,0.469343416127421,0.21183207086382,1.32317038832977,0.49465875882444,6.45857706783622,1.56813604813205,1.3130957840345,0.492422699235184,2.91480836629851,84.7393630188029,0.512612642393558,0.412773735926445,0.555583582109135,0.753473828018764,0.136694227721025,0,1.5298058699447,1.81936888020755,0.967399816630967,1.90934123603023,0.158167996790568,2.03319467126849,1.29606408986162,1.04544148007234,1.74690050996942,1.88810084938749,2.47960367176008,2.35580347785627,10.628427809927,0.621339313086926,0,0,0.165458490457098,0.583353565032143,0.904118764344118,1.18269287843545,1.5256441023948,2.47388331203505,1.46803082195995,0.241584120826006,2.59227005632079,0,0.405450430580328,0.410843828659309,0,0.179026695667481,0.198681354781265,0,0,0,0,0,0,0.0962118416403295,0,1.13365191807606,0,0,0,0.386379188064381,4.50437941082837,5.31139710375069,0.428736758158132,17.5550236412377,77.9357542811552,84.6998435173205,72.184834693364,87.9888293599681,137.016503954128,145.035628298823,126.904230043579,133.745397357593,153.162134236661,140.313044484743,0,1.19707462020309,1.87806966329548,1.21553358534147,1.25767897576789,1.47074806760011,2.889207461421,2.06035057238894,4.1719497246936,3.53776096469316,4.30914809813408,2.82939512079114,4.86935838843389,3.26528277264833,3.84817642002609,1.42888107384922,3.82418275618023,4.43691207066522,4.94503080963968,3.38557516309114,3.08582327146874,3.19456451086807,3.33810665926249,4.21504608233753,3.3879376949519,3.29996970777538,3.29270351170991,4.99832451731901,3.12349461845482,4.48913817326191,3.55905054372522,4.43270170690036,5.72923460437565,2.63392630016142,2.12197272079256,6.49507502638659,2.8071793013449,3.86767897286937,3.06061331310149,1.98532277207564,0.463735671240843
|short_description=p1@Rapgef4
}}

Revision as of 00:27, 14 September 2013

Short description:p1@Rapgef4
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Rapgef4_5end
Coexpression cluster:MCL_coexpression_mm9:1
Association with transcript: 0bp_to_ENSMUST00000090826, ENSMUST00000149421, ENSMUST00000150234, ENSMUST00000171878, NM_001204165, NM_001204167, NM_019688, uc008kbl.2, uc008kbm.2, uc008kbn.2, uc008kbo.2_5end
EntrezGene:Rapgef4
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Rapgef4

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G71.44
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.70
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I62.73
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.60
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I71.01
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I81.40
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.16
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.40
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A331.38
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D11.60
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D21.38
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.86
GP2+ M cell, pool3.CNhs13240.11847-124I20.65
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.64
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.62
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F51.16
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F61.50
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F72.25
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.87
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.66
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.58
Mouse Astrocytes, donor2.CNhs12078.11552-120C41.26
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C37.49
Mouse Granule cells, donor2.CNhs12357.11731-123E311.11
Mouse Granule cells, donor3.CNhs12108.11636-122C77.61
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.71
Mouse Microglia, donor1.CNhs12629.11718-123C80.60
Mouse Microglia, donor2.CNhs12634.11736-123E81.54
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.52
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F51.22
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D91.05
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F129.14
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D520.10
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D22.08
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F21.44
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D62.76
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D371.58
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F3112.62
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D781.41
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D45.80
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F49.42
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D87.81
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E479.01
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E561.34
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I678.39
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D633.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F635.88
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E19.13
Mouse Schwann, donor1.CNhs12507.11728-123D91.14
Mouse Schwann, donor2.CNhs12573.11746-123F92.80
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G31.45
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A76.04
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.85
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B66.28
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D733.10
adrenal gland, embryo E14.CNhs11038.406-44C51.21
adrenal gland, embryo E16.CNhs11004.1254-43D61.83
adrenal gland, embryo E17.CNhs11043.1263-45I14.15
adrenal gland, embryo E18.CNhs11026.1262-18F56.03
adrenal gland, neonate N00.CNhs11191.1311-23C16.58
adrenal gland, neonate N25.CNhs11223.1377-27I315.46
amnion, adult pregnant day17.5.CNhs10488.583-22A80.49
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.81
bone (os femoris), neonate N16.CNhs11225.1525-43A60.66
bone (os femoris), neonate N20.CNhs11195.1350-25C30.97
cecum, adult.CNhs10467.37-13H41.86
cerebellum, adult.CNhs10494.15-8B2139.95
cerebellum, neonate N30.CNhs11135.1395-42I2120.43
colon, adult.CNhs10468.36-18H70.26
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.12
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.60
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.38
corpora quadrigemina, adult.CNhs10501.16-22A4106.05
corpus striatum, adult.CNhs10487.19-21D8221.43
corpus striatum, neonate N00.CNhs11226.630-43F110.43
cortex, adult.CNhs10473.12-14D5243.53
cortex, neonate N30.CNhs11107.1392-42F2174.14
diencephalon, adult.CNhs10482.20-12F289.76
diencephalon, neonate N30.CNhs11201.1388-42B297.99
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B13.06
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A21.74
epididymis, adult.CNhs10490.58-23B23.03
eyeball, adult.CNhs10484.31-12G45.26
eyeball, embryo E12.CNhs11016.345-16C60.52
eyeball, embryo E14.CNhs10521.399-16E21.15
eyeball, embryo E15.CNhs10593.426-16C90.54
eyeball, embryo E17.CNhs11023.1261-18D41.96
eyeball, neonate N00.CNhs11207.633-15C63.33
eyeball, neonate N01.CNhs11140.1532-43E72.69
eyeball, neonate N02.CNhs11205.1551-44G81.97
eyeball, neonate N16.CNhs11188.777-19A27.24
forelimb, embryo E11.CNhs10596.335-25E20.22
forelimb, embryo E12.CNhs10600.359-14H20.38
forelimb, embryo E13.CNhs10589.384-1E20.35
forelimb, embryo E14.CNhs10577.413-26A80.44
forelimb, embryo E15.CNhs11007.437-20E71.67
forelimb, embryo E17.CNhs10598.1517-43C41.04
forelimb, embryo E18.CNhs11008.1520-43B52.47
gonad, embryo E13.CNhs11044.1564-45I60.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.28
heart, embryo E11.CNhs10586.331-24E91.86
heart, embryo E12.CNhs11015.353-12F51.41
heart, embryo E13.CNhs11013.376-3I90.54
heart, embryo E14.CNhs10597.403-26D40.47
heart, embryo E15.CNhs11017.431-16C81.18
heart, embryo E16.CNhs11021.457-17C60.77
heart, embryo E17.CNhs11025.479-18E51.40
heart, embryo E18.CNhs11030.1283-20G31.34
heart, neonate N00.CNhs11213.639-21E32.80
heart, neonate N03.CNhs11221.1349-25I21.97
heart, neonate N10.CNhs11118.749-24G14.27
heart, neonate N16.CNhs11209.782-15G16.89
heart, neonate N20.CNhs11127.821-26I66.43
heart, neonate N25.CNhs11196.1351-25D39.22
heart, neonate N30.CNhs11202.1390-42D27.65
hippocampus, adult.CNhs10478.13-16E8196.41
hippocampus, neonate N00.CNhs11228.627-43G19.47
intestinal mucosa, adult.CNhs10506.860-29I30.66
intestine, adult.CNhs10496.178-9A30.79
intestine, embryo E12.CNhs11019.1251-16I50.43
intestine, embryo E13.CNhs11010.381-16D50.46
intestine, embryo E15.CNhs10602.976-16D80.77
intestine, embryo E16.CNhs10585.463-22H41.01
intestine, embryo E17.CNhs10582.482-18D31.33
intestine, embryo E18.CNhs10526.1289-20F70.95
intestine, neonate N00.CNhs11126.644-26D10.47
intestine, neonate N01.CNhs11192.1322-23E90.99
intestine, neonate N06.CNhs11102.688-20B81.01
intestine, neonate N07.CNhs11095.720-20F21.59
intestine, neonate N10.CNhs11098.755-23A51.95
intestine, neonate N20.CNhs11187.827-18D11.80
intestine, neonate N25.CNhs11121.1352-25E31.51
intestine, neonate N30.CNhs11131.1384-42G12.39
kidney, embryo E14.CNhs10606.411-4I90.76
kidney, embryo E15.CNhs10997.434-16F80.91
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I21.43
kidney, embryo E18.CNhs11001.1288-20C71.55
kidney, neonate N00.CNhs11214.646-21G71.33
kidney, neonate N10.CNhs11206.758-6D50.76
kidney, neonate N20.CNhs11113.832-19I10.44
kidney, neonate N25.CNhs11122.1353-25F30.31
kidney, neonate N30.CNhs11203.1385-42H10.12
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.50
liver, embryo E13.CNhs10524.378-3H60.39
liver, embryo E14.CNhs10594.409-16E10.45
liver, embryo E15.CNhs10520.433-16D71.22
liver, embryo E16.CNhs10523.462-17F50.96
liver, embryo E17.CNhs10510.481-18A30.51
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.32
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B11.66
lung, embryo E12.CNhs10522.354-16G20.95
lung, embryo E14.CNhs10604.404-26F80.98
lung, embryo E15.CNhs11020.432-17C51.02
lung, embryo E16.CNhs10998.458-17B61.17
lung, embryo E17.CNhs10605.480-44A61.34
lung, embryo E18.CNhs10583.1287-20I61.19
lung, neonate N00.CNhs11224.640-42C62.34
lung, neonate N06.CNhs11212.683-20E51.42
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E60.64
lung, neonate N20.CNhs11109.822-18A40.49
lung, neonate N25.CNhs11119.1359-25C70.86
lung, neonate N30.CNhs11133.1394-42H21.88
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B61.48
mammary gland, adult pregnant day19.CNhs10476.588-5H23.59
medulla oblongata, adult.CNhs10477.17-12C284.45
medulla oblongata, neonate N30.CNhs11200.1396-42A374.31
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.32
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.39
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.43
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.45
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.57
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.29
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.40
olfactory brain, adult.CNhs10489.18-22I981.62
ovary, adult.CNhs10507.91-2I72.70
ovary, embryo E18.CNhs11040.505-44H70.89
ovary, neonate N00.CNhs11217.1299-22I42.28
oviduct, adult pregnant day01.CNhs10500.988-6G63.96
pancreas, adult.CNhs10486.34-16E49.29
pancreas, embryo E14.CNhs11012.405-44F41.94
pancreas, embryo E15.CNhs11042.1556-45F23.33
pancreas, embryo E16.CNhs11003.460-26E54.72
pancreas, embryo E17.CNhs10599.1558-45G32.36
pancreas, embryo E18.CNhs10580.1535-43I75.84
pancreas, neonate N00.CNhs11105.645-26G910.60
pancreas, neonate N01.CNhs11138.1531-43D78.72
pancreas, neonate N02.CNhs11139.1539-43D87.13
pancreas, neonate N16.CNhs11136.787-43B67.58
pancreas, neonate N25.CNhs11094.1555-45E24.22
pancreas, neonate N30.CNhs11182.1548-44H53.09
pituitary gland, adult.CNhs10493.21-1G860.94
pituitary gland, embryo E12.CNhs11018.346-16E60.90
pituitary gland, embryo E13.CNhs11009.370-44C70.78
pituitary gland, embryo E14.CNhs11037.398-44A51.29
pituitary gland, embryo E15.CNhs10592.427-16B94.79
pituitary gland, embryo E16.CNhs11036.449-43F66.60
pituitary gland, embryo E17.CNhs11039.1265-44F510.53
pituitary gland, neonate N00.CNhs11190.1308-22E97.92
placenta, adult pregnant day10.CNhs10472.539-13I70.47
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F81.32
skin, adult.CNhs10492.30-1C30.49
skin, neonate N00.CNhs11124.650-25G46.46
skin, neonate N03.CNhs11215.662-22H31.57
skin, neonate N06.CNhs11097.693-20I51.31
skin, neonate N10.CNhs11108.762-6C40.49
small intestine, neonate N16.CNhs11114.790-21I12.91
spinal cord, adult.CNhs10505.24-13C984.74
spleen, adult.CNhs10465.25-2G20.51
spleen, embryo E16.CNhs11035.461-43C10.41
spleen, embryo E18.CNhs11011.1271-21F20.56
spleen, neonate N10.CNhs11116.752-24D10.75
spleen, neonate N20.CNhs11112.824-19H10.14
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C61.53
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C91.82
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.97
stomach, adult.CNhs10503.33-1H61.91
stomach, embryo E12.CNhs10588.356-43E30.16
stomach, embryo E15.CNhs10603.1252-16G82.03
stomach, embryo E16.CNhs11022.459-17D41.30
stomach, embryo E17.CNhs11006.1035-18D51.05
stomach, embryo E18.CNhs10999.1286-20C61.75
stomach, neonate N03.CNhs11193.1340-24B81.89
stomach, neonate N07.CNhs11210.718-18A92.48
stomach, neonate N25.CNhs11104.1355-25E42.36
stomach, neonate N30.CNhs11134.1386-42I110.63
submandibular gland, adult.CNhs10469.59-29C10.62
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.17
testis, embryo E16.CNhs11033.470-26G50.58
testis, embryo E17.CNhs11029.486-18I50.90
testis, embryo E18.CNhs11027.503-18G51.18
testis, neonate N00.CNhs11189.1300-22B71.53
testis, neonate N07.CNhs11222.726-26I42.47
testis, neonate N10.CNhs11204.763-44D91.47
testis, neonate N20.CNhs11110.839-18H30.24
testis, neonate N30.CNhs11130.1391-42E22.59
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.41
thymus, embryo E15.CNhs11005.430-45I20.41
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.18
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.00
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.10
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B41.13
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.39
uterus, adult pregnant day19.CNhs10497.590-15F54.50
uterus, adult.CNhs10509.92-27E55.31
vagina, adult.CNhs10502.89-27D50.43
vesicular gland, adult.CNhs10491.51-27F817.56
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A177.94
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A284.70
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A372.18
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D787.99
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A4137.02
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A5145.04
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A6126.90
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A7133.75
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A8153.16
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A9140.31
whole body, embryo E11.CNhs11014.324-5I80.00
whole body, embryo E12.CNhs10587.857-27C91.20
whole body, embryo E13.CNhs10512.372-23H21.88
whole body, embryo E14.5.CNhs10578.420-27D21.22
whole body, embryo E14.CNhs10519.395-14B11.26
whole body, embryo E16.CNhs10514.453-14F21.47
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G52.89
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G52.06
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G54.17
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G53.54
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G54.31
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G52.83
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G54.87
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G53.27
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G53.85
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G51.43
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G53.82
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G54.44
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G54.95
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G53.39
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G53.09
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G53.19
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G53.34
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G54.22
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G53.39
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G53.30
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G53.29
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G55.00
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G53.12
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G54.49
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G53.56
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G54.43
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G55.73
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G52.63
whole body, embryo E17.5.CNhs10513.490-9F92.12
whole body, embryo E17.CNhs10517.475-3I56.50
whole body, embryo E18.CNhs10516.493-3B32.81
whole body, neonate N00.CNhs10525.657-19C23.87
whole body, neonate N01.CNhs10576.659-23C63.06
whole body, neonate N06.CNhs10515.692-21D11.99
whole body, neonate N10.CNhs10518.761-6B40.46





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.21e-0823
neuroblast (sensu Vertebrata)1.21e-0823

Uber anatomy
Ontology termp-valuen
regional part of nervous system5.74e-1954
neural tube1.16e-1752
neural rod1.16e-1752
future spinal cord1.16e-1752
neural keel1.16e-1752
structure with developmental contribution from neural crest8.66e-1692
neurectoderm2.27e-1564
neural plate2.27e-1564
presumptive neural plate2.27e-1564
brain7.55e-1547
future brain7.55e-1547
nervous system2.75e-1475
ecto-epithelium3.14e-1473
regional part of brain3.16e-1446
central nervous system3.20e-1473
gray matter2.11e-1334
anterior neural tube3.66e-1340
ectoderm-derived structure6.86e-1395
ectoderm6.86e-1395
presumptive ectoderm6.86e-1395
pre-chordal neural plate7.67e-1349
regional part of forebrain1.62e-1239
forebrain1.62e-1239
future forebrain1.62e-1239
brain grey matter1.05e-1029
regional part of telencephalon1.05e-1029
telencephalon1.05e-1029
occipital lobe2.25e-0810
visual cortex2.25e-0810
neocortex2.25e-0810
regional part of cerebral cortex3.51e-0717







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