FFCP PHASE1:Hg19::chrX:133930285..133930338,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=159090|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30490|TSSclassifier=S|UniProt=A6NK68|association_with_transcript=0bp_to_ENST00000370787,ENST00000486347_5end|coexpression_cluster_id=C1|description=CAGE_peak_5_at_FAM122B_5end|id=chrX:133930285..133930338,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002622;4.53e-07;3|ontology_enrichment_celltype_v019_2=CL:0002622,3.91e-07,3|ontology_enrichment_development_v019=UBERON:0009117;9.02e-07;10!UBERON:0005564;9.02e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!1.33e-14!86;UBERON:0001017!1.06e-13!82;UBERON:0001049!3.63e-12!57;UBERON:0005068!3.63e-12!57;UBERON:0006241!3.63e-12!57;UBERON:0007135!3.63e-12!57;UBERON:0003075!3.74e-12!86;UBERON:0007284!3.74e-12!86;UBERON:0000073!4.54e-12!94;UBERON:0001016!4.54e-12!94;UBERON:0002780!5.31e-12!41;UBERON:0001890!5.31e-12!41;UBERON:0006240!5.31e-12!41;UBERON:0003056!7.16e-12!61;UBERON:0000955!1.29e-11!69;UBERON:0006238!1.29e-11!69;UBERON:0003080!2.27e-11!42;UBERON:0002616!4.26e-11!59;UBERON:0002346!4.27e-11!90;UBERON:0000033!6.76e-11!123;UBERON:0000153!3.91e-10!129;UBERON:0007811!3.91e-10!129;UBERON:0004121!3.83e-09!169;UBERON:0001893!7.35e-09!34;UBERON:0002020!1.15e-08!34;UBERON:0003528!1.15e-08!34;UBERON:0000924!1.37e-08!173;UBERON:0006601!1.37e-08!173;UBERON:0001869!1.50e-08!32;UBERON:0002791!1.69e-08!33;UBERON:0000062!1.96e-07!511;UBERON:0000956!5.52e-07!25;UBERON:0000203!5.52e-07!25;UBERON:0007023!8.73e-07!115|ontology_enrichment_uberon_v019=UBERON:0003296;1.37e-09;4!UBERON:0010133;1.37e-09;4!UBERON:0002791;3.42e-09;32!UBERON:0001737;6.22e-09;9!UBERON:0001557;6.22e-09;9!UBERON:0001869;1.22e-08;32!UBERON:0002780;2.16e-08;41!UBERON:0001890;2.16e-08;41!UBERON:0000956;5.65e-08;25!UBERON:0000203;5.65e-08;25!UBERON:0001893;5.92e-08;34!UBERON:0002619;7.55e-08;22!UBERON:0003528;8.80e-08;34!UBERON:0002020;8.80e-08;34!UBERON:0001950;3.68e-07;20!UBERON:0000073;3.88e-07;53!UBERON:0002616;3.88e-07;53|ontology_enrichment_uberon_v019_2=UBERON:0002780,6.12e-12,41;UBERON:0001890,6.12e-12,41;UBERON:0003080,6.12e-12,41;UBERON:0006240,6.12e-12,41;UBERON:0003056,3.27e-11,61;UBERON:0011216,5.32e-11,223;UBERON:0000073,1.18e-10,53;UBERON:0002616,1.18e-10,53;UBERON:0001017,5.37e-10,81;UBERON:0000955,7.69e-10,68;UBERON:0006238,7.69e-10,68;UBERON:0001049,8.41e-10,56;UBERON:0005068,8.41e-10,56;UBERON:0006241,8.41e-10,56;UBERON:0007135,8.41e-10,56;UBERON:0003296,1.38e-09,4;UBERON:0010133,1.38e-09,4;UBERON:0002791,2.79e-09,32;UBERON:0001869,2.79e-09,32;UBERON:0001016,3.82e-09,89;UBERON:0001737,5.63e-09,9;UBERON:0003075,1.12e-08,82;UBERON:0007284,1.12e-08,82;UBERON:0003528,1.52e-08,34;UBERON:0002020,1.52e-08,34;UBERON:0001893,1.52e-08,34;UBERON:0000956,5.37e-08,25;UBERON:0000203,5.37e-08,25;UBERON:0002346,5.52e-08,86;UBERON:0002619,8.05e-08,22;UBERON:0001950,3.93e-07,20|phase1_expression=0,0,0.281908808191942,0,0,0,0,0.631719873426831,0,0,0.697801167972428,0,0,0.247532705920093,0,0,0,0,0,0.123121058076788,0,0,0.572471974262113,1.50561867580173,0.251085279189606,0.0764134057479513,0,0.157421562627358,0,0,0,0,0,0,0,0,0,1.10799081706375,0,0.217010870715852,0,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0.211255286311942,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411202997999018,0,0,0.473447805734733,0,0.222820913770347,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0.651083453856419,0,0,0,0,0.236777252044017,0,0,0.267440195783507,0.289648807765598,0,1.34140171940727,0.255725123687061,0,0,0,0.795285947051099,0,1.03988298880475,0.665188192387692,0.087834785693126,12.4430121722827,0,0,0.324547393654683,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0.446498641420399,0,0,0,0,0,0,0,0,0,0.506522046658319,0.132409180813219,0.573673241497627,0,0.560677600142307,0,0,0.311211035399766,0.269421344139376,0.163461903113459,0.151357427644931,0,0,0.936480230490962,0,0.149448680551801,0.587172493218824,0.323745888736263,0.421352420106746,1.02077085627447,0.245668634623536,0.309977343527296,0,0.247266929278557,0,0,0.336672227908132,0.875829639103749,0.831192346452549,0.438977620880838,0.30648779579902,0,0.226864366320042,0.717558542755448,0.213557388818567,0.211931901159562,0.300091096084402,0.206105058476878,0,0.18611685633159,0.843881661206331,0.292311015483596,0.252433774244115,0.184099797284599,0.323292113637624,0.710019185033229,0.302256294682921,0.339121184620975,0,0,0,0.487894824518382,1.06023814657188,2.5562667431294,1.14027160516907,1.51392510525377,1.82488679537915,0,0,0,0,0,1.53798840051797,1.01150814046861,1.44606617930089,0.992645754591546,1.96091499683166,1.18635309555548,1.48314438976181,0.98110732562673,1.15424147083917,0,0,0.4115740113314,1.47008711385542,0,0,0,0.441463099414651,0.245976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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=159090 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30490 | |||
|TSSclassifier=S | |||
|UniProt=A6NK68 | |||
|association_with_transcript=0bp_to_ENST00000370787,ENST00000486347_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_5_at_FAM122B_5end | |||
|id=chrX:133930285..133930338,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002622;4.53e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002622,3.91e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;9.02e-07;10!UBERON:0005564;9.02e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0003296;1.37e-09;4!UBERON:0010133;1.37e-09;4!UBERON:0002791;3.42e-09;32!UBERON:0001737;6.22e-09;9!UBERON:0001557;6.22e-09;9!UBERON:0001869;1.22e-08;32!UBERON:0002780;2.16e-08;41!UBERON:0001890;2.16e-08;41!UBERON:0000956;5.65e-08;25!UBERON:0000203;5.65e-08;25!UBERON:0001893;5.92e-08;34!UBERON:0002619;7.55e-08;22!UBERON:0003528;8.80e-08;34!UBERON:0002020;8.80e-08;34!UBERON:0001950;3.68e-07;20!UBERON:0000073;3.88e-07;53!UBERON:0002616;3.88e-07;53 | |||
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| |||
|short_description=p5@FAM122B | |||
}} |
Revision as of 10:48, 14 September 2013
Short description: | p5@FAM122B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_FAM122B_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000370787, ENST00000486347_5end |
EntrezGene: | FAM122B |
HGNC: | 30490 |
UniProt: | A6NK68 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
prostate stromal cell | 3.91e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 6.12e-12 | 41 |
forebrain | 6.12e-12 | 41 |
anterior neural tube | 6.12e-12 | 41 |
future forebrain | 6.12e-12 | 41 |
pre-chordal neural plate | 3.27e-11 | 61 |
organ system subdivision | 5.32e-11 | 223 |
regional part of nervous system | 1.18e-10 | 53 |
regional part of brain | 1.18e-10 | 53 |
central nervous system | 5.37e-10 | 81 |
brain | 7.69e-10 | 68 |
future brain | 7.69e-10 | 68 |
neural tube | 8.41e-10 | 56 |
neural rod | 8.41e-10 | 56 |
future spinal cord | 8.41e-10 | 56 |
neural keel | 8.41e-10 | 56 |
gland of diencephalon | 1.38e-09 | 4 |
neuroendocrine gland | 1.38e-09 | 4 |
regional part of telencephalon | 2.79e-09 | 32 |
cerebral hemisphere | 2.79e-09 | 32 |
nervous system | 3.82e-09 | 89 |
larynx | 5.63e-09 | 9 |
neural plate | 1.12e-08 | 82 |
presumptive neural plate | 1.12e-08 | 82 |
brain grey matter | 1.52e-08 | 34 |
gray matter | 1.52e-08 | 34 |
telencephalon | 1.52e-08 | 34 |
cerebral cortex | 5.37e-08 | 25 |
pallium | 5.37e-08 | 25 |
neurectoderm | 5.52e-08 | 86 |
regional part of cerebral cortex | 8.05e-08 | 22 |
neocortex | 3.93e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.