FFCP PHASE1:Mm9::chr7:17501357..17501384,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=741|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:17501357..17501384,-|id=chr7:17501357..17501384,-|ontology_enrichment_celltype=CL:0000117!9.28e-08!23;CL:0000337!9.28e-08!23;CL:0000393!3.61e-07!39;CL:0000211!3.61e-07!39;CL:0000055!4.01e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.83e-08,23;CL:0000337,1.83e-08,23;CL:0000393,8.16e-08,39;CL:0000211,8.16e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.76e-15!73;UBERON:0005743!5.76e-15!73;UBERON:0000073!8.65e-15!75;UBERON:0001016!8.65e-15!75;UBERON:0001049!7.71e-14!52;UBERON:0005068!7.71e-14!52;UBERON:0006241!7.71e-14!52;UBERON:0007135!7.71e-14!52;UBERON:0000955!4.88e-12!50;UBERON:0006238!4.88e-12!50;UBERON:0002616!1.07e-11!49;UBERON:0002020!1.51e-11!34;UBERON:0002346!8.15e-11!71;UBERON:0003075!8.15e-11!71;UBERON:0007284!8.15e-11!71;UBERON:0000033!7.99e-10!63;UBERON:0003080!8.33e-10!40;UBERON:0002780!2.54e-09!39;UBERON:0001890!2.54e-09!39;UBERON:0006240!2.54e-09!39;UBERON:0004121!2.55e-09!102;UBERON:0000924!2.55e-09!102;UBERON:0006601!2.55e-09!102;UBERON:0002791!8.28e-09!29;UBERON:0003528!8.28e-09!29;UBERON:0001893!8.28e-09!29;UBERON:0003056!4.74e-08!49;UBERON:0002619!3.88e-07!17;UBERON:0002021!3.92e-07!10;UBERON:0000411!3.92e-07!10;UBERON:0001950!3.92e-07!10;UBERON:0000956!4.21e-07!21;UBERON:0001869!4.21e-07!21;UBERON:0000203!4.21e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.49e-17,73;UBERON:0000073,2.25e-17,54;UBERON:0001049,1.25e-16,52;UBERON:0005068,1.25e-16,52;UBERON:0006241,1.25e-16,52;UBERON:0007135,1.25e-16,52;UBERON:0001016,1.79e-16,75;UBERON:0002020,3.32e-14,34;UBERON:0000955,4.51e-13,47;UBERON:0006238,4.51e-13,47;UBERON:0002616,1.16e-12,46;UBERON:0002346,1.60e-12,64;UBERON:0003075,1.60e-12,64;UBERON:0007284,1.60e-12,64;UBERON:0003080,2.10e-11,40;UBERON:0002780,8.17e-11,39;UBERON:0001890,8.17e-11,39;UBERON:0006240,8.17e-11,39;UBERON:0003528,8.31e-11,29;UBERON:0002791,8.31e-11,29;UBERON:0001893,8.31e-11,29;UBERON:0010314,1.25e-10,92;UBERON:0004121,1.38e-10,95;UBERON:0000924,1.38e-10,95;UBERON:0006601,1.38e-10,95;UBERON:0010371,1.94e-10,73;UBERON:0003056,1.34e-08,49;UBERON:0002021,1.97e-08,10;UBERON:0000411,1.97e-08,10;UBERON:0001950,1.97e-08,10;UBERON:0000956,3.05e-08,21;UBERON:0001869,3.05e-08,21;UBERON:0000203,3.05e-08,21;UBERON:0002619,5.01e-08,17|phase1_expression=3.04282809499109,1.04692622291808,0.909998478779072,0,0,0.16787927191189,0.934450562382103,0.516493293766305,0.140788722151667,0.468129052643987,0,0.319088635981346,0,0.34968160967599,0.333109761815663,0.202475267389826,0,0.315462165358238,0.137114433605739,0.42438965179803,1.10556277196391,1.29078236561151,0.261199789138935,1.27993938234725,1.14704640533585,0.57423196411502,0,1.07735616342945,2.28028103347649,1.76421090831952,0.665191531965914,1.27006134691926,0,0,0.288851619751275,0.997407872150954,0.204169356262369,1.67412652294763,0.7813353445238,0.523523743973798,0.588231488031014,2.04913645487534,0,1.88845226963366,2.43304634926835,2.38610777810186,0,2.39827672018491,0.219686182734472,1.94429899074283,1.53985063787899,1.43752564364972,0,0,0,1.80081605225163,1.43266719969378,4.12537673821954,0.809265843438391,4.7609188134483,1.90149421051854,1.69422266034566,2.66788438833342,2.6996991518442,3.9554654502679,2.8419204597844,2.69640099466564,4.99483796918021,0.207379224616955,1.89008313664367,1.26194976810829,7.7125765789027,10.3808214247258,0.979926393719632,1.62937300731002,1.83843757322004,1.10115880999389,4.08599481872601,4.45458946443106,1.05509030184155,3.38504281328916,2.08365348222704,10.3297709630511,2.25105044012672,3.0559649555362,5.30331453852602,6.12198227436143,1.86399445825301,0.832988126665025,0.982430281388212,0,0,0,1.07940638327563,0,0,0.561777680527007,1.70430322578058,1.55871602761721,1.06001872353102,1.97180787687353,0,0,7.11066703153331,1.5154372870785,0.760079596425296,0.505524445014783,0.5709193985953,0,0.593768556259299,1.21439728736295,0.304465478312141,0.922461989024234,1.20578112442098,1.41106448562846,0.753999547978053,0,0.144599356919912,0,0.808834249737046,0.883366073841574,1.45462575940567,0,0.585561594023094,6.28340120440365,1.78819938646014,0.479260498023681,0.599902730993408,0.381210681219194,3.2953940669061,0,2.1361239859187,2.78118912307642,3.83573185995496,2.70124457927428,1.94689515681309,1.01839363850316,0.497627882440372,0.252722758433675,0.420883711772948,0.910843100738926,0.689706313300419,0.180062129805349,1.50704817835715,0.680364991513279,0.640568601424249,1.12442069471675,1.03481348295606,1.07783996466421,0.189106080167819,0.703804496655795,1.31517439456545,1.94633074457919,0,0.823128545631774,1.19420560091096,0,0,1.13665399758237,0.207125772535502,1.87620847984877,2.34080679899319,0.473489471170421,0,1.07986979021165,0.930135779001631,0.804820204198858,1.16765342367169,0.822799249567402,0.492502392237286,0.810688095458557,1.02339991197733,0.439100230582101,1.20785776884335,1.68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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=741 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:17501357..17501384,- | |||
|id=chr7:17501357..17501384,- | |||
|ontology_enrichment_celltype=CL:0000117!9.28e-08!23;CL:0000337!9.28e-08!23;CL:0000393!3.61e-07!39;CL:0000211!3.61e-07!39;CL:0000055!4.01e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.83e-08,23;CL:0000337,1.83e-08,23;CL:0000393,8.16e-08,39;CL:0000211,8.16e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.76e-15!73;UBERON:0005743!5.76e-15!73;UBERON:0000073!8.65e-15!75;UBERON:0001016!8.65e-15!75;UBERON:0001049!7.71e-14!52;UBERON:0005068!7.71e-14!52;UBERON:0006241!7.71e-14!52;UBERON:0007135!7.71e-14!52;UBERON:0000955!4.88e-12!50;UBERON:0006238!4.88e-12!50;UBERON:0002616!1.07e-11!49;UBERON:0002020!1.51e-11!34;UBERON:0002346!8.15e-11!71;UBERON:0003075!8.15e-11!71;UBERON:0007284!8.15e-11!71;UBERON:0000033!7.99e-10!63;UBERON:0003080!8.33e-10!40;UBERON:0002780!2.54e-09!39;UBERON:0001890!2.54e-09!39;UBERON:0006240!2.54e-09!39;UBERON:0004121!2.55e-09!102;UBERON:0000924!2.55e-09!102;UBERON:0006601!2.55e-09!102;UBERON:0002791!8.28e-09!29;UBERON:0003528!8.28e-09!29;UBERON:0001893!8.28e-09!29;UBERON:0003056!4.74e-08!49;UBERON:0002619!3.88e-07!17;UBERON:0002021!3.92e-07!10;UBERON:0000411!3.92e-07!10;UBERON:0001950!3.92e-07!10;UBERON:0000956!4.21e-07!21;UBERON:0001869!4.21e-07!21;UBERON:0000203!4.21e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.49e-17,73;UBERON:0000073,2.25e-17,54;UBERON:0001049,1.25e-16,52;UBERON:0005068,1.25e-16,52;UBERON:0006241,1.25e-16,52;UBERON:0007135,1.25e-16,52;UBERON:0001016,1.79e-16,75;UBERON:0002020,3.32e-14,34;UBERON:0000955,4.51e-13,47;UBERON:0006238,4.51e-13,47;UBERON:0002616,1.16e-12,46;UBERON:0002346,1.60e-12,64;UBERON:0003075,1.60e-12,64;UBERON:0007284,1.60e-12,64;UBERON:0003080,2.10e-11,40;UBERON:0002780,8.17e-11,39;UBERON:0001890,8.17e-11,39;UBERON:0006240,8.17e-11,39;UBERON:0003528,8.31e-11,29;UBERON:0002791,8.31e-11,29;UBERON:0001893,8.31e-11,29;UBERON:0010314,1.25e-10,92;UBERON:0004121,1.38e-10,95;UBERON:0000924,1.38e-10,95;UBERON:0006601,1.38e-10,95;UBERON:0010371,1.94e-10,73;UBERON:0003056,1.34e-08,49;UBERON:0002021,1.97e-08,10;UBERON:0000411,1.97e-08,10;UBERON:0001950,1.97e-08,10;UBERON:0000956,3.05e-08,21;UBERON:0001869,3.05e-08,21;UBERON:0000203,3.05e-08,21;UBERON:0002619,5.01e-08,17 | |||
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| |||
|short_description=p@chr7:17501357..17501384,- | |||
}} |
Revision as of 12:35, 14 September 2013
Short description: | p@chr7:17501357..17501384, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:17501357..17501384, - |
Coexpression cluster: | MCL_coexpression_mm9:741 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.83e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.83e-08 | 23 |
electrically responsive cell | 8.16e-08 | 39 |
electrically active cell | 8.16e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.49e-17 | 73 |
regional part of nervous system | 2.25e-17 | 54 |
neural tube | 1.25e-16 | 52 |
neural rod | 1.25e-16 | 52 |
future spinal cord | 1.25e-16 | 52 |
neural keel | 1.25e-16 | 52 |
nervous system | 1.79e-16 | 75 |
gray matter | 3.32e-14 | 34 |
brain | 4.51e-13 | 47 |
future brain | 4.51e-13 | 47 |
regional part of brain | 1.16e-12 | 46 |
neurectoderm | 1.60e-12 | 64 |
neural plate | 1.60e-12 | 64 |
presumptive neural plate | 1.60e-12 | 64 |
anterior neural tube | 2.10e-11 | 40 |
regional part of forebrain | 8.17e-11 | 39 |
forebrain | 8.17e-11 | 39 |
future forebrain | 8.17e-11 | 39 |
brain grey matter | 8.31e-11 | 29 |
regional part of telencephalon | 8.31e-11 | 29 |
telencephalon | 8.31e-11 | 29 |
structure with developmental contribution from neural crest | 1.25e-10 | 92 |
ectoderm-derived structure | 1.38e-10 | 95 |
ectoderm | 1.38e-10 | 95 |
presumptive ectoderm | 1.38e-10 | 95 |
ecto-epithelium | 1.94e-10 | 73 |
pre-chordal neural plate | 1.34e-08 | 49 |
occipital lobe | 1.97e-08 | 10 |
visual cortex | 1.97e-08 | 10 |
neocortex | 1.97e-08 | 10 |
cerebral cortex | 3.05e-08 | 21 |
cerebral hemisphere | 3.05e-08 | 21 |
pallium | 3.05e-08 | 21 |
regional part of cerebral cortex | 5.01e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.