FFCP PHASE1:Hg19::chr11:94706804..94706907,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55693 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25498 | |||
|TSSclassifier=strong | |||
|UniProt=Q6B0I6 | |||
|association_with_transcript=0bp_to_ENST00000335080,NM_018039,uc001pfe.2_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_KDM4D_5end | |||
|id=chr11:94706804..94706907,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!6.57e-10!143;DOID:305!1.31e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,6.44e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.84e-18!94;UBERON:0001016!1.84e-18!94;UBERON:0005743!3.35e-17!86;UBERON:0001017!3.06e-16!82;UBERON:0001049!3.52e-14!57;UBERON:0005068!3.52e-14!57;UBERON:0006241!3.52e-14!57;UBERON:0007135!3.52e-14!57;UBERON:0000955!9.52e-14!69;UBERON:0006238!9.52e-14!69;UBERON:0004121!1.44e-13!169;UBERON:0000924!1.96e-13!173;UBERON:0006601!1.96e-13!173;UBERON:0002616!3.91e-13!59;UBERON:0003075!7.88e-13!86;UBERON:0007284!7.88e-13!86;UBERON:0002346!1.74e-12!90;UBERON:0000033!6.54e-11!123;UBERON:0000153!8.16e-11!129;UBERON:0007811!8.16e-11!129;UBERON:0002780!3.34e-10!41;UBERON:0001890!3.34e-10!41;UBERON:0006240!3.34e-10!41;UBERON:0003080!3.90e-10!42;UBERON:0003056!7.53e-10!61;UBERON:0002020!3.56e-08!34;UBERON:0003528!3.56e-08!34;UBERON:0001893!4.09e-08!34;UBERON:0002791!5.13e-08!33;UBERON:0001869!1.01e-07!32;UBERON:0000475!4.93e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001016;1.56e-09;83!UBERON:0000073;4.50e-09;53!UBERON:0002616;4.50e-09;53!UBERON:0003528;5.28e-09;34!UBERON:0002020;5.28e-09;34!UBERON:0002791;6.48e-08;32!UBERON:0001869;1.09e-07;32!UBERON:0002780;1.18e-07;41!UBERON:0001890;1.18e-07;41!UBERON:0001893;1.38e-07;34!UBERON:0000955;2.63e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.80e-21,89;UBERON:0001017,3.89e-19,81;UBERON:0001049,4.95e-16,56;UBERON:0005068,4.95e-16,56;UBERON:0006241,4.95e-16,56;UBERON:0007135,4.95e-16,56;UBERON:0000955,3.61e-15,68;UBERON:0006238,3.61e-15,68;UBERON:0000073,1.04e-14,53;UBERON:0002616,1.04e-14,53;UBERON:0004121,1.59e-14,171;UBERON:0000924,1.59e-14,171;UBERON:0006601,1.59e-14,171;UBERON:0003075,7.42e-12,82;UBERON:0007284,7.42e-12,82;UBERON:0002346,1.79e-11,86;UBERON:0010371,4.10e-11,104;UBERON:0002780,9.30e-11,41;UBERON:0001890,9.30e-11,41;UBERON:0003080,9.30e-11,41;UBERON:0006240,9.30e-11,41;UBERON:0003528,3.02e-09,34;UBERON:0002020,3.02e-09,34;UBERON:0003056,3.90e-09,61;UBERON:0011216,8.88e-09,223;UBERON:0001893,1.56e-08,34;UBERON:0002791,1.81e-08,32;UBERON:0001869,1.81e-08,32;UBERON:0010314,3.28e-07,132;UBERON:0003076,9.15e-07,15;UBERON:0003057,9.15e-07,15 | |||
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| |||
|short_description=p1@KDM4D | |||
}} |
Revision as of 09:54, 11 January 2014
Short description: | p1@KDM4D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KDM4D_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000335080, NM_018039, uc001pfe.2_5end |
EntrezGene: | KDM4D |
HGNC: | 25498 |
UniProt: | Q6B0I6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 3.80e-21 | 89 |
central nervous system | 3.89e-19 | 81 |
neural tube | 4.95e-16 | 56 |
neural rod | 4.95e-16 | 56 |
future spinal cord | 4.95e-16 | 56 |
neural keel | 4.95e-16 | 56 |
brain | 3.61e-15 | 68 |
future brain | 3.61e-15 | 68 |
regional part of nervous system | 1.04e-14 | 53 |
regional part of brain | 1.04e-14 | 53 |
ectoderm-derived structure | 1.59e-14 | 171 |
ectoderm | 1.59e-14 | 171 |
presumptive ectoderm | 1.59e-14 | 171 |
neural plate | 7.42e-12 | 82 |
presumptive neural plate | 7.42e-12 | 82 |
neurectoderm | 1.79e-11 | 86 |
ecto-epithelium | 4.10e-11 | 104 |
regional part of forebrain | 9.30e-11 | 41 |
forebrain | 9.30e-11 | 41 |
anterior neural tube | 9.30e-11 | 41 |
future forebrain | 9.30e-11 | 41 |
brain grey matter | 3.02e-09 | 34 |
gray matter | 3.02e-09 | 34 |
pre-chordal neural plate | 3.90e-09 | 61 |
organ system subdivision | 8.88e-09 | 223 |
telencephalon | 1.56e-08 | 34 |
regional part of telencephalon | 1.81e-08 | 32 |
cerebral hemisphere | 1.81e-08 | 32 |
structure with developmental contribution from neural crest | 3.28e-07 | 132 |
posterior neural tube | 9.15e-07 | 15 |
chordal neural plate | 9.15e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 6.44e-07 | 143 |