FFCP PHASE1:Hg19::chr6:159420748..159420775,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83861 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21054 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=37bp_to_ENST00000449822_5end | |||
|description=CAGE_peak_3_at_RSPH3_5end | |||
|id=chr6:159420748..159420775,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.77e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.20e-24!90;UBERON:0001049!1.31e-23!57;UBERON:0005068!1.31e-23!57;UBERON:0006241!1.31e-23!57;UBERON:0007135!1.31e-23!57;UBERON:0007023!3.30e-23!115;UBERON:0003075!1.41e-22!86;UBERON:0007284!1.41e-22!86;UBERON:0002780!7.67e-22!41;UBERON:0001890!7.67e-22!41;UBERON:0006240!7.67e-22!41;UBERON:0003080!1.76e-20!42;UBERON:0002616!2.09e-20!59;UBERON:0005743!2.52e-20!86;UBERON:0001017!4.25e-20!82;UBERON:0000073!1.26e-18!94;UBERON:0001016!1.26e-18!94;UBERON:0001893!3.09e-18!34;UBERON:0002020!4.90e-18!34;UBERON:0003528!4.90e-18!34;UBERON:0001869!7.57e-18!32;UBERON:0000955!7.78e-18!69;UBERON:0006238!7.78e-18!69;UBERON:0002791!1.22e-17!33;UBERON:0003056!3.36e-17!61;UBERON:0000924!1.45e-16!173;UBERON:0006601!1.45e-16!173;UBERON:0004121!3.57e-15!169;UBERON:0000956!1.63e-14!25;UBERON:0000203!1.63e-14!25;UBERON:0002619!1.95e-14!22;UBERON:0000033!1.61e-13!123;UBERON:0000153!1.83e-13!129;UBERON:0007811!1.83e-13!129;UBERON:0001950!2.61e-13!20;UBERON:0000468!7.43e-10!659;UBERON:0000062!8.79e-10!511;UBERON:0000480!1.33e-09!626;UBERON:0002050!1.77e-09!605;UBERON:0005423!1.77e-09!605;UBERON:0000922!2.11e-09!612;UBERON:0000467!2.20e-09!625;UBERON:0000923!3.43e-09!604;UBERON:0005291!3.43e-09!604;UBERON:0006598!3.43e-09!604;UBERON:0002532!3.43e-09!604;UBERON:0000475!4.07e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.03e-18;41!UBERON:0001890;1.03e-18;41!UBERON:0001869;1.35e-18;32!UBERON:0001893;1.65e-18;34!UBERON:0003528;3.73e-18;34!UBERON:0002020;3.73e-18;34!UBERON:0002791;6.25e-18;32!UBERON:0002619;3.59e-17;22!UBERON:0000956;9.26e-17;25!UBERON:0000203;9.26e-17;25!UBERON:0000073;6.99e-16;53!UBERON:0002616;6.99e-16;53!UBERON:0001950;8.58e-16;20!UBERON:0000955;1.42e-09;68!UBERON:0001017;1.94e-09;75!UBERON:0007023;1.85e-08;114!UBERON:0001016;1.03e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.22e-28,56;UBERON:0005068,1.22e-28,56;UBERON:0006241,1.22e-28,56;UBERON:0007135,1.22e-28,56;UBERON:0007023,1.76e-27,114;UBERON:0000073,3.61e-27,53;UBERON:0002616,3.61e-27,53;UBERON:0002780,1.31e-25,41;UBERON:0001890,1.31e-25,41;UBERON:0003080,1.31e-25,41;UBERON:0006240,1.31e-25,41;UBERON:0002346,9.90e-25,86;UBERON:0003075,1.30e-22,82;UBERON:0007284,1.30e-22,82;UBERON:0001017,4.17e-22,81;UBERON:0001893,3.36e-21,34;UBERON:0003528,5.86e-21,34;UBERON:0002020,5.86e-21,34;UBERON:0001869,1.04e-20,32;UBERON:0000955,6.40e-20,68;UBERON:0006238,6.40e-20,68;UBERON:0002791,8.37e-20,32;UBERON:0001016,1.31e-19,89;UBERON:0010371,1.36e-19,104;UBERON:0003056,3.01e-19,61;UBERON:0002619,2.58e-17,22;UBERON:0000956,1.25e-16,25;UBERON:0000203,1.25e-16,25;UBERON:0010314,4.73e-16,132;UBERON:0001950,6.20e-16,20;UBERON:0004121,2.35e-14,171;UBERON:0000924,2.35e-14,171;UBERON:0006601,2.35e-14,171;UBERON:0000025,8.92e-07,192 | |||
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| |||
|short_description=p3@RSPH3 | |||
}} |
Revision as of 14:54, 22 January 2014
Short description: | p3@RSPH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RSPH3_5end |
Coexpression cluster: | NA |
Association with transcript: | 37bp_to_ENST00000449822_5end |
EntrezGene: | RSPH3 |
HGNC: | 21054 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.22e-28 | 56 |
neural rod | 1.22e-28 | 56 |
future spinal cord | 1.22e-28 | 56 |
neural keel | 1.22e-28 | 56 |
adult organism | 1.76e-27 | 114 |
regional part of nervous system | 3.61e-27 | 53 |
regional part of brain | 3.61e-27 | 53 |
regional part of forebrain | 1.31e-25 | 41 |
forebrain | 1.31e-25 | 41 |
anterior neural tube | 1.31e-25 | 41 |
future forebrain | 1.31e-25 | 41 |
neurectoderm | 9.90e-25 | 86 |
neural plate | 1.30e-22 | 82 |
presumptive neural plate | 1.30e-22 | 82 |
central nervous system | 4.17e-22 | 81 |
telencephalon | 3.36e-21 | 34 |
brain grey matter | 5.86e-21 | 34 |
gray matter | 5.86e-21 | 34 |
cerebral hemisphere | 1.04e-20 | 32 |
brain | 6.40e-20 | 68 |
future brain | 6.40e-20 | 68 |
regional part of telencephalon | 8.37e-20 | 32 |
nervous system | 1.31e-19 | 89 |
ecto-epithelium | 1.36e-19 | 104 |
pre-chordal neural plate | 3.01e-19 | 61 |
regional part of cerebral cortex | 2.58e-17 | 22 |
cerebral cortex | 1.25e-16 | 25 |
pallium | 1.25e-16 | 25 |
structure with developmental contribution from neural crest | 4.73e-16 | 132 |
neocortex | 6.20e-16 | 20 |
ectoderm-derived structure | 2.35e-14 | 171 |
ectoderm | 2.35e-14 | 171 |
presumptive ectoderm | 2.35e-14 | 171 |
tube | 8.92e-07 | 192 |