FFCP PHASE1:Hg19::chr7:2598602..2598621,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23288 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29171 | |||
|TSSclassifier=strong | |||
|UniProt=Q6IPM2 | |||
|association_with_transcript=-10bp_to_ENST00000402050,ENST00000404984,NM_001100390,NM_152558,uc003smk.3,uc003sml.1,uc003smn.3,uc003smo.3,uc010ksm.1,uc011jvy.1,uc011jvz.1_5end | |||
|description=CAGE_peak_2_at_IQCE_5end | |||
|id=chr7:2598602..2598621,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.38e-15!57;UBERON:0005068!6.38e-15!57;UBERON:0006241!6.38e-15!57;UBERON:0007135!6.38e-15!57;UBERON:0001869!1.15e-14!32;UBERON:0001893!1.21e-14!34;UBERON:0007023!1.55e-14!115;UBERON:0002780!2.05e-14!41;UBERON:0001890!2.05e-14!41;UBERON:0006240!2.05e-14!41;UBERON:0002791!4.59e-14!33;UBERON:0002619!5.80e-14!22;UBERON:0002020!6.56e-14!34;UBERON:0003528!6.56e-14!34;UBERON:0003080!1.25e-13!42;UBERON:0000955!3.04e-13!69;UBERON:0006238!3.04e-13!69;UBERON:0001017!3.80e-13!82;UBERON:0002616!4.88e-13!59;UBERON:0001950!9.48e-13!20;UBERON:0000924!1.18e-11!173;UBERON:0006601!1.18e-11!173;UBERON:0000073!1.38e-11!94;UBERON:0001016!1.38e-11!94;UBERON:0005743!2.08e-11!86;UBERON:0002346!2.42e-11!90;UBERON:0000956!5.42e-11!25;UBERON:0000203!5.42e-11!25;UBERON:0004121!1.02e-10!169;UBERON:0003075!2.81e-10!86;UBERON:0007284!2.81e-10!86;UBERON:0000033!1.89e-08!123;UBERON:0000153!4.15e-08!129;UBERON:0007811!4.15e-08!129;UBERON:0003056!5.24e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.20e-15;22!UBERON:0001869;1.25e-14;32!UBERON:0001893;2.61e-14;34!UBERON:0001950;4.75e-14;20!UBERON:0002791;8.55e-14;32!UBERON:0003528;2.23e-13;34!UBERON:0002020;2.23e-13;34!UBERON:0000956;2.39e-12;25!UBERON:0000203;2.39e-12;25!UBERON:0002780;2.54e-12;41!UBERON:0001890;2.54e-12;41!UBERON:0000073;1.15e-09;53!UBERON:0002616;1.15e-09;53!UBERON:0000955;1.43e-07;68!UBERON:0001017;5.95e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.98e-16,53;UBERON:0002616,1.98e-16,53;UBERON:0001049,3.47e-16,56;UBERON:0005068,3.47e-16,56;UBERON:0006241,3.47e-16,56;UBERON:0007135,3.47e-16,56;UBERON:0001869,2.48e-15,32;UBERON:0001893,2.66e-15,34;UBERON:0002780,4.61e-15,41;UBERON:0001890,4.61e-15,41;UBERON:0003080,4.61e-15,41;UBERON:0006240,4.61e-15,41;UBERON:0001017,1.49e-14,81;UBERON:0003528,1.55e-14,34;UBERON:0002020,1.55e-14,34;UBERON:0001016,1.97e-14,89;UBERON:0002619,2.05e-14,22;UBERON:0000955,2.62e-14,68;UBERON:0006238,2.62e-14,68;UBERON:0002791,3.19e-14,32;UBERON:0007023,7.91e-14,114;UBERON:0001950,3.70e-13,20;UBERON:0000956,1.63e-11,25;UBERON:0000203,1.63e-11,25;UBERON:0004121,3.38e-11,171;UBERON:0000924,3.38e-11,171;UBERON:0006601,3.38e-11,171;UBERON:0002346,8.32e-11,86;UBERON:0003075,1.01e-09,82;UBERON:0007284,1.01e-09,82;UBERON:0003056,1.09e-08,61;UBERON:0010371,2.61e-08,104;UBERON:0010314,5.87e-08,132 | |||
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| |||
|short_description=p2@IQCE | |||
}} |
Revision as of 15:27, 22 January 2014
Short description: | p2@IQCE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IQCE_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000402050, ENST00000404984, NM_001100390, NM_152558, uc003smk.3, uc003sml.1, uc003smn.3, uc003smo.3, uc010ksm.1, uc011jvy.1, uc011jvz.1_5end |
EntrezGene: | IQCE |
HGNC: | 29171 |
UniProt: | Q6IPM2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.98e-16 | 53 |
regional part of brain | 1.98e-16 | 53 |
neural tube | 3.47e-16 | 56 |
neural rod | 3.47e-16 | 56 |
future spinal cord | 3.47e-16 | 56 |
neural keel | 3.47e-16 | 56 |
cerebral hemisphere | 2.48e-15 | 32 |
telencephalon | 2.66e-15 | 34 |
regional part of forebrain | 4.61e-15 | 41 |
forebrain | 4.61e-15 | 41 |
anterior neural tube | 4.61e-15 | 41 |
future forebrain | 4.61e-15 | 41 |
central nervous system | 1.49e-14 | 81 |
brain grey matter | 1.55e-14 | 34 |
gray matter | 1.55e-14 | 34 |
nervous system | 1.97e-14 | 89 |
regional part of cerebral cortex | 2.05e-14 | 22 |
brain | 2.62e-14 | 68 |
future brain | 2.62e-14 | 68 |
regional part of telencephalon | 3.19e-14 | 32 |
adult organism | 7.91e-14 | 114 |
neocortex | 3.70e-13 | 20 |
cerebral cortex | 1.63e-11 | 25 |
pallium | 1.63e-11 | 25 |
ectoderm-derived structure | 3.38e-11 | 171 |
ectoderm | 3.38e-11 | 171 |
presumptive ectoderm | 3.38e-11 | 171 |
neurectoderm | 8.32e-11 | 86 |
neural plate | 1.01e-09 | 82 |
presumptive neural plate | 1.01e-09 | 82 |
pre-chordal neural plate | 1.09e-08 | 61 |
ecto-epithelium | 2.61e-08 | 104 |
structure with developmental contribution from neural crest | 5.87e-08 | 132 |