FFCP PHASE1:Mm9::chr2:122194866..122194890,-: Difference between revisions
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{{FFCP|EntrezGene=435684|HGNC=|MCL_coexpression_id=30|UniProt=F7AIV2|association_with_transcript=0bp_to_ENSMUST00000151130_5end|description=CAGE_peak_1_at_Shf_5end|id=chr2:122194866..122194890,-|ontology_enrichment_celltype=CL:0000540!3.65e-14!33;CL:0000047!3.65e-14!33;CL:0000031!3.65e-14!33;CL:0000404!3.65e-14!33;CL:0000117!3.49e-13!23;CL:0000337!3.49e-13!23;CL:0000221!9.32e-12!44;CL:0000133!9.32e-12!44;CL:0002319!2.22e-11!43;CL:0000393!4.51e-09!39;CL:0000211!4.51e-09!39;CL:0000055!2.11e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.65e-14,33;CL:0000047,3.65e-14,33;CL:0000031,3.65e-14,33;CL:0000404,3.65e-14,33;CL:0000117,3.49e-13,23;CL:0000337,3.49e-13,23;CL:0000221,9.31e-12,44;CL:0000133,9.31e-12,44;CL:0002319,2.22e-11,43;CL:0000393,4.51e-09,39;CL:0000211,4.51e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.60e-23!73;UBERON:0005743!6.60e-23!73;UBERON:0000073!8.46e-23!75;UBERON:0001016!8.46e-23!75;UBERON:0004121!9.96e-23!102;UBERON:0000924!9.96e-23!102;UBERON:0006601!9.96e-23!102;UBERON:0002346!2.58e-19!71;UBERON:0003075!2.58e-19!71;UBERON:0007284!2.58e-19!71;UBERON:0001049!1.08e-17!52;UBERON:0005068!1.08e-17!52;UBERON:0006241!1.08e-17!52;UBERON:0007135!1.08e-17!52;UBERON:0000033!2.12e-16!63;UBERON:0002020!2.19e-16!34;UBERON:0000955!6.73e-16!50;UBERON:0006238!6.73e-16!50;UBERON:0002616!1.31e-15!49;UBERON:0003056!3.30e-15!49;UBERON:0003080!4.92e-14!40;UBERON:0002780!1.20e-13!39;UBERON:0001890!1.20e-13!39;UBERON:0006240!1.20e-13!39;UBERON:0002791!2.00e-13!29;UBERON:0003528!2.00e-13!29;UBERON:0001893!2.00e-13!29;UBERON:0007811!1.45e-12!86;UBERON:0000153!1.82e-12!94;UBERON:0000956!1.74e-09!21;UBERON:0001869!1.74e-09!21;UBERON:0000203!1.74e-09!21;UBERON:0002619!4.09e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.60e-23,73;UBERON:0001016,8.46e-23,75;UBERON:0004121,1.95e-22,95;UBERON:0000924,1.95e-22,95;UBERON:0006601,1.95e-22,95;UBERON:0010371,1.46e-19,73;UBERON:0002346,2.05e-19,64;UBERON:0003075,2.05e-19,64;UBERON:0007284,2.05e-19,64;UBERON:0000073,1.45e-18,54;UBERON:0001049,1.08e-17,52;UBERON:0005068,1.08e-17,52;UBERON:0006241,1.08e-17,52;UBERON:0007135,1.08e-17,52;UBERON:0002020,2.19e-16,34;UBERON:0003056,3.30e-15,49;UBERON:0000955,5.96e-15,47;UBERON:0006238,5.96e-15,47;UBERON:0002616,1.15e-14,46;UBERON:0003080,4.92e-14,40;UBERON:0002780,1.20e-13,39;UBERON:0001890,1.20e-13,39;UBERON:0006240,1.20e-13,39;UBERON:0003528,2.00e-13,29;UBERON:0002791,2.00e-13,29;UBERON:0001893,2.00e-13,29;UBERON:0010314,6.55e-11,92;UBERON:0000956,1.74e-09,21;UBERON:0001869,1.74e-09,21;UBERON:0000203,1.74e-09,21;UBERON:0002619,4.09e-07,17|phase1_expression=12.8119077683835,11.8651638597383,6.3699893514535,4.53696316960245,5.50985302940982,17.1236857350128,17.2873354040689,3.48632973292256,6.335492496825,3.7450324211519,2.39705155515707,1.83475965689274,4.10881751834894,5.15780374272085,3.66420737997229,6.68168382386426,8.39474253753776,2.36596624018678,2.4680598049033,1.69755860719212,13.9470995847754,3.77305614563364,3.6567970479451,4.31979541542198,5.50582274561208,16.6527269593356,7.75371593086335,12.9282739611533,4.94060890586572,4.53654233567875,16.4080577884925,19.6859508772486,24.6025915033828,0,12.1317680295535,8.97667084935859,16.3335485009895,2.09265815368454,2.3440060335714,1.57057123192139,1.76469446409304,2.04913645487534,5.34061388334269,5.16176953699867,4.05507724878058,5.68994931701213,10.9534788208725,3.2703773457067,4.61340983742391,6.02732687130279,6.29938897314131,8.62515386189829,3.85899993932794,9.42970784614748,7.39406358113421,3.08711323243136,2.86533439938757,2.57836046138721,49.3652164497419,50.2541430308431,30.4239073682966,9.82649143000483,8.00365316500025,3.1496490104849,4.94433181283487,4.9733608046227,13.1824048628098,20.7477884873639,40.2315695756893,39.8267518078487,37.437843120546,31.7072592688222,31.1424642741775,23.6407242484861,32.6833056172186,18.3843757322004,13.2139057199266,17.1101033034152,16.1286859919056,32.4440267816277,38.0588597386024,28.129322010065,32.943593882163,15.757353080887,15.8910177687883,31.8198872311561,25.0574158206421,31.5015063444758,7.42116694665204,13.6784523793282,7.24661221754194,7.74381489283248,4.75979933595425,11.873470216032,3.24888208723835,10.3046184032387,10.5333315098814,20.2812083867889,17.9252343175979,15.546941278455,17.8871143116384,20.5322363862909,38.2207859559969,49.7746692207332,3.030874574157,2.78695852022608,1.51657333504435,9.02052649780574,0.517875767294343,8.46120192669501,14.052311468057,18.2679286987285,10.6083128737787,12.9621470875255,9.40709657085639,4.02133092254962,3.95511948374998,2.74738778147832,3.5384422077995,9.38247729694973,9.71702681225732,9.69750506270444,3.72783522436244,167.470615890605,225.364656531278,7.66371165625774,2.87556298814209,3.59941638596045,1.65191295194984,17.5255048103643,30.652540388848,20.4816593943969,26.9427696298029,23.5258220743904,15.7918913865266,12.1680947300818,6.61955865027056,11.4454412961286,7.58168275301024,2.314860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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:435684 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F7AIV2 | |||
|association_with_transcript=0bp_to_ENSMUST00000151130_5end | |||
|cluster_id=chr2:122194866..122194890,- | |||
|description=CAGE_peak_1_at_Shf_5end | |||
|id=chr2:122194866..122194890,- | |||
|ontology_enrichment_celltype=CL:0000540!3.65e-14!33;CL:0000047!3.65e-14!33;CL:0000031!3.65e-14!33;CL:0000404!3.65e-14!33;CL:0000117!3.49e-13!23;CL:0000337!3.49e-13!23;CL:0000221!9.32e-12!44;CL:0000133!9.32e-12!44;CL:0002319!2.22e-11!43;CL:0000393!4.51e-09!39;CL:0000211!4.51e-09!39;CL:0000055!2.11e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.65e-14,33;CL:0000047,3.65e-14,33;CL:0000031,3.65e-14,33;CL:0000404,3.65e-14,33;CL:0000117,3.49e-13,23;CL:0000337,3.49e-13,23;CL:0000221,9.31e-12,44;CL:0000133,9.31e-12,44;CL:0002319,2.22e-11,43;CL:0000393,4.51e-09,39;CL:0000211,4.51e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.60e-23!73;UBERON:0005743!6.60e-23!73;UBERON:0000073!8.46e-23!75;UBERON:0001016!8.46e-23!75;UBERON:0004121!9.96e-23!102;UBERON:0000924!9.96e-23!102;UBERON:0006601!9.96e-23!102;UBERON:0002346!2.58e-19!71;UBERON:0003075!2.58e-19!71;UBERON:0007284!2.58e-19!71;UBERON:0001049!1.08e-17!52;UBERON:0005068!1.08e-17!52;UBERON:0006241!1.08e-17!52;UBERON:0007135!1.08e-17!52;UBERON:0000033!2.12e-16!63;UBERON:0002020!2.19e-16!34;UBERON:0000955!6.73e-16!50;UBERON:0006238!6.73e-16!50;UBERON:0002616!1.31e-15!49;UBERON:0003056!3.30e-15!49;UBERON:0003080!4.92e-14!40;UBERON:0002780!1.20e-13!39;UBERON:0001890!1.20e-13!39;UBERON:0006240!1.20e-13!39;UBERON:0002791!2.00e-13!29;UBERON:0003528!2.00e-13!29;UBERON:0001893!2.00e-13!29;UBERON:0007811!1.45e-12!86;UBERON:0000153!1.82e-12!94;UBERON:0000956!1.74e-09!21;UBERON:0001869!1.74e-09!21;UBERON:0000203!1.74e-09!21;UBERON:0002619!4.09e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.60e-23,73;UBERON:0001016,8.46e-23,75;UBERON:0004121,1.95e-22,95;UBERON:0000924,1.95e-22,95;UBERON:0006601,1.95e-22,95;UBERON:0010371,1.46e-19,73;UBERON:0002346,2.05e-19,64;UBERON:0003075,2.05e-19,64;UBERON:0007284,2.05e-19,64;UBERON:0000073,1.45e-18,54;UBERON:0001049,1.08e-17,52;UBERON:0005068,1.08e-17,52;UBERON:0006241,1.08e-17,52;UBERON:0007135,1.08e-17,52;UBERON:0002020,2.19e-16,34;UBERON:0003056,3.30e-15,49;UBERON:0000955,5.96e-15,47;UBERON:0006238,5.96e-15,47;UBERON:0002616,1.15e-14,46;UBERON:0003080,4.92e-14,40;UBERON:0002780,1.20e-13,39;UBERON:0001890,1.20e-13,39;UBERON:0006240,1.20e-13,39;UBERON:0003528,2.00e-13,29;UBERON:0002791,2.00e-13,29;UBERON:0001893,2.00e-13,29;UBERON:0010314,6.55e-11,92;UBERON:0000956,1.74e-09,21;UBERON:0001869,1.74e-09,21;UBERON:0000203,1.74e-09,21;UBERON:0002619,4.09e-07,17 | |||
|phase1_expression=12.8119077683835,11.8651638597383,6.3699893514535,4.53696316960245,5.50985302940982,17.1236857350128,17.2873354040689,3.48632973292256,6.335492496825,3.7450324211519,2.39705155515707,1.83475965689274,4.10881751834894,5.15780374272085,3.66420737997229,6.68168382386426,8.39474253753776,2.36596624018678,2.4680598049033,1.69755860719212,13.9470995847754,3.77305614563364,3.6567970479451,4.31979541542198,5.50582274561208,16.6527269593356,7.75371593086335,12.9282739611533,4.94060890586572,4.53654233567875,16.4080577884925,19.6859508772486,24.6025915033828,0,12.1317680295535,8.97667084935859,16.3335485009895,2.09265815368454,2.3440060335714,1.57057123192139,1.76469446409304,2.04913645487534,5.34061388334269,5.16176953699867,4.05507724878058,5.68994931701213,10.9534788208725,3.2703773457067,4.61340983742391,6.02732687130279,6.29938897314131,8.62515386189829,3.85899993932794,9.42970784614748,7.39406358113421,3.08711323243136,2.86533439938757,2.57836046138721,49.3652164497419,50.2541430308431,30.4239073682966,9.82649143000483,8.00365316500025,3.1496490104849,4.94433181283487,4.9733608046227,13.1824048628098,20.7477884873639,40.2315695756893,39.8267518078487,37.437843120546,31.7072592688222,31.1424642741775,23.6407242484861,32.6833056172186,18.3843757322004,13.2139057199266,17.1101033034152,16.1286859919056,32.4440267816277,38.0588597386024,28.129322010065,32.943593882163,15.757353080887,15.8910177687883,31.8198872311561,25.0574158206421,31.5015063444758,7.42116694665204,13.6784523793282,7.24661221754194,7.74381489283248,4.75979933595425,11.873470216032,3.24888208723835,10.3046184032387,10.5333315098814,20.2812083867889,17.9252343175979,15.546941278455,17.8871143116384,20.5322363862909,38.2207859559969,49.7746692207332,3.030874574157,2.78695852022608,1.51657333504435,9.02052649780574,0.517875767294343,8.46120192669501,14.052311468057,18.2679286987285,10.6083128737787,12.9621470875255,9.40709657085639,4.02133092254962,3.95511948374998,2.74738778147832,3.5384422077995,9.38247729694973,9.71702681225732,9.69750506270444,3.72783522436244,167.470615890605,225.364656531278,7.66371165625774,2.87556298814209,3.59941638596045,1.65191295194984,17.5255048103643,30.652540388848,20.4816593943969,26.9427696298029,23.5258220743904,15.7918913865266,12.1680947300818,6.61955865027056,11.4454412961286,7.58168275301024,2.31486041475121,19.1277051155174,20.4612872945791,20.7071449276152,20.646560043493,16.6689422920753,16.6547836370305,24.2687466609698,4.65666067330228,14.2274875335676,11.3463648100692,13.3722854364601,10.9597866213787,11.1218899690239,7.66154766348766,8.64284972913362,11.9420560091096,2.1066395619397,2.05878325691772,2.55747149456033,7.66365358381357,8.91199027928165,8.10279276574567,6.62885259638589,6.29645541591692,5.09081472528348,6.97601834251224,6.70683503499048,4.90414437942112,5.59503489705834,5.41752631461014,4.05344047729279,3.94739966048397,3.95190207523891,2.54992195644706,23.3421842906181,22.433205498684,0.991256348951394,5.28901133327089,9.59797127408553,10.4506502337197,6.95884291139304,8.0673409849337,8.00560957841533,5.70676878337677,4.74529061544512,6.25856027951241,10.5560787696113,6.96347652144028,7.40863531052657,5.39291645192533,5.83572734661674,8.16479220342906,10.8110703543257,7.5404018322421,5.63538678365402,7.33144780243131,7.37019451236978,5.6810014111158,5.69128834118316,5.90440591918409,8.79192875911699,8.51440431060424,16.6013471168803,6.17326891149548,6.09332884850929,8.09503604585473,8.52012509831712,9.88826354984909,9.93040821947537,11.5078454980324,5.67473293712624,8.51140380883053,56.0696005456683,7.07067800570156,11.2333562321242,13.1341016532498,12.19902411949,12.0610880340842,2.03228509183265,12.3169417650815,6.68156403412306,8.48725428875941,7.74477819352057,7.03526281255626,5.2369600994923,7.41507861859636,4.25614889086716,5.75808193086815,6.69710028361446,3.60499292374624,3.62638461918381,3.32692834737477,0,1.63171705145613,32.4564420192564,36.14771376592,13.0045977890111,11.2523219128515,9.3442918864705,4.54447668967871,11.042787679569,8.98009111882268,20.8960695800815,17.2057534525837,16.4871018820972,15.0030561318081,10.1202675418724,11.9824901743638,11.0680577825027,14.1381379225595,9.36804562374573,12.6426578603751,8.79589580509311,5.77395430403874,0,7.76898035695941,9.67435382287203,5.65815239267694,5.90603785761546,5.53383266299069,5.42699415653264,4.72593848320757,4.9909632973861,3.16036757935816,0,1.03135543248187,20.4263763452273,13.5045820523483,12.6771510107099,10.0738406464848,10.4630737848941,8.74007206250146,8.55654907131029,8.82948352432338,7.74416636610244,7.41412248023371,1.7642271844397,12.366468970611,7.10443477461984,5.30753739367772,7.87857470420701,6.07321329056727,3.78925087618806,11.6817940266621,8.37267315909478,9.70018279427146,7.03739204004904,8.4765805652111,7.65487675237741,7.54967971581525,2.37969801991397,3.91864066506242,4.00779924032829,2.86401185404534,11.8625997592926,8.74273708645449,8.2084059024569,6.27264888043406,8.5161399861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| |||
|short_description=p1@Shf | |||
}} |
Revision as of 22:19, 3 August 2015
Short description: | p1@Shf |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Shf_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | 0bp_to_ENSMUST00000151130_5end |
EntrezGene: | 435684 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.65e-14 | 33 |
neuronal stem cell | 3.65e-14 | 33 |
neuroblast | 3.65e-14 | 33 |
electrically signaling cell | 3.65e-14 | 33 |
CNS neuron (sensu Vertebrata) | 3.49e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.49e-13 | 23 |
ectodermal cell | 9.31e-12 | 44 |
neurectodermal cell | 9.31e-12 | 44 |
neural cell | 2.22e-11 | 43 |
electrically responsive cell | 4.51e-09 | 39 |
electrically active cell | 4.51e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.60e-23 | 73 |
nervous system | 8.46e-23 | 75 |
ectoderm-derived structure | 1.95e-22 | 95 |
ectoderm | 1.95e-22 | 95 |
presumptive ectoderm | 1.95e-22 | 95 |
ecto-epithelium | 1.46e-19 | 73 |
neurectoderm | 2.05e-19 | 64 |
neural plate | 2.05e-19 | 64 |
presumptive neural plate | 2.05e-19 | 64 |
regional part of nervous system | 1.45e-18 | 54 |
neural tube | 1.08e-17 | 52 |
neural rod | 1.08e-17 | 52 |
future spinal cord | 1.08e-17 | 52 |
neural keel | 1.08e-17 | 52 |
gray matter | 2.19e-16 | 34 |
pre-chordal neural plate | 3.30e-15 | 49 |
brain | 5.96e-15 | 47 |
future brain | 5.96e-15 | 47 |
regional part of brain | 1.15e-14 | 46 |
anterior neural tube | 4.92e-14 | 40 |
regional part of forebrain | 1.20e-13 | 39 |
forebrain | 1.20e-13 | 39 |
future forebrain | 1.20e-13 | 39 |
brain grey matter | 2.00e-13 | 29 |
regional part of telencephalon | 2.00e-13 | 29 |
telencephalon | 2.00e-13 | 29 |
structure with developmental contribution from neural crest | 6.55e-11 | 92 |
cerebral cortex | 1.74e-09 | 21 |
cerebral hemisphere | 1.74e-09 | 21 |
pallium | 1.74e-09 | 21 |
regional part of cerebral cortex | 4.09e-07 | 17 |