FFCP PHASE1:Mm9::chr3:86724752..86724899,-: Difference between revisions
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{{FFCP|EntrezGene=70762|HGNC=|MCL_coexpression_id=22|UniProt=Q6PGN3|association_with_transcript=0bp_to_ENSMUST00000029719,ENSMUST00000094144,ENSMUST00000169835,NM_001195496,NM_001195497,NM_001195498,NM_001195499,NM_001195500,NM_027539,uc008prl.3,uc008prm.3,uc008prn.3,uc008pro.3,uc008prp.3,uc008prq.3,uc008prr.3_5end|description=CAGE_peak_1_at_Dclk2_5end|id=chr3:86724752..86724899,-|ontology_enrichment_celltype=CL:0000221!1.17e-18!44;CL:0000133!1.17e-18!44;CL:0002319!3.51e-18!43;CL:0000540!7.72e-18!33;CL:0000047!7.72e-18!33;CL:0000031!7.72e-18!33;CL:0000404!7.72e-18!33;CL:0000055!1.23e-15!50;CL:0000393!1.38e-15!39;CL:0000211!1.38e-15!39;CL:0000117!8.04e-15!23;CL:0000337!8.04e-15!23|ontology_enrichment_celltype_v019_2=CL:0000221,1.18e-18,44;CL:0000133,1.18e-18,44;CL:0002319,3.58e-18,43;CL:0000540,5.19e-18,33;CL:0000047,5.19e-18,33;CL:0000031,5.19e-18,33;CL:0000404,5.19e-18,33;CL:0000393,9.60e-16,39;CL:0000211,9.60e-16,39;CL:0000117,5.82e-15,23;CL:0000337,5.82e-15,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.33e-34!75;UBERON:0001016!2.33e-34!75;UBERON:0001017!2.66e-34!73;UBERON:0005743!2.66e-34!73;UBERON:0004121!2.16e-30!102;UBERON:0000924!2.16e-30!102;UBERON:0006601!2.16e-30!102;UBERON:0002346!5.79e-26!71;UBERON:0003075!5.79e-26!71;UBERON:0007284!5.79e-26!71;UBERON:0001049!2.11e-24!52;UBERON:0005068!2.11e-24!52;UBERON:0006241!2.11e-24!52;UBERON:0007135!2.11e-24!52;UBERON:0000033!2.59e-24!63;UBERON:0000955!5.76e-23!50;UBERON:0006238!5.76e-23!50;UBERON:0002616!2.96e-22!49;UBERON:0007811!1.01e-21!86;UBERON:0003056!1.17e-21!49;UBERON:0000153!9.60e-21!94;UBERON:0002020!2.04e-19!34;UBERON:0003080!2.81e-19!40;UBERON:0002780!9.81e-19!39;UBERON:0001890!9.81e-19!39;UBERON:0006240!9.81e-19!39;UBERON:0002791!2.69e-16!29;UBERON:0003528!2.69e-16!29;UBERON:0001893!2.69e-16!29;UBERON:0000956!9.83e-12!21;UBERON:0001869!9.83e-12!21;UBERON:0000203!9.83e-12!21;UBERON:0002619!2.64e-09!17;UBERON:0000468!2.04e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.67e-34,75;UBERON:0001017,1.93e-34,73;UBERON:0004121,5.62e-32,95;UBERON:0000924,5.62e-32,95;UBERON:0006601,5.62e-32,95;UBERON:0002346,4.58e-28,64;UBERON:0003075,4.58e-28,64;UBERON:0007284,4.58e-28,64;UBERON:0000073,1.28e-25,54;UBERON:0010371,2.91e-25,73;UBERON:0001049,1.91e-24,52;UBERON:0005068,1.91e-24,52;UBERON:0006241,1.91e-24,52;UBERON:0007135,1.91e-24,52;UBERON:0003056,7.20e-22,49;UBERON:0000955,2.11e-21,47;UBERON:0006238,2.11e-21,47;UBERON:0002616,1.07e-20,46;UBERON:0002020,1.32e-19,34;UBERON:0003080,1.83e-19,40;UBERON:0010314,3.19e-19,92;UBERON:0002780,6.46e-19,39;UBERON:0001890,6.46e-19,39;UBERON:0006240,6.46e-19,39;UBERON:0003528,1.88e-16,29;UBERON:0002791,1.88e-16,29;UBERON:0001893,1.88e-16,29;UBERON:0000956,7.67e-12,21;UBERON:0001869,7.67e-12,21;UBERON:0000203,7.67e-12,21;UBERON:0002619,2.19e-09,17|phase1_expression=8.80818659076367,0.348975407639361,0,0,0,1.84667199103079,0.700837921786577,5.55230290798778,0.563154888606667,0.936258105287974,0.171217968225505,2.47293692885543,2.05440875917447,1.92324885321794,0.999329285446988,0.809901069559304,0,3.3123527362615,3.15363197293199,4.66828616977833,6.4632900514813,0.794327609607082,0.261199789138935,0.319984845586813,0.45881856213434,1.72269589234506,0.430761996159075,0,0.570070258369122,0.504060259519861,0.443461021310609,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,14.3522372492158,12.6721164024393,4.9557623083654,0.782391344348039,11.1192829754028,11.2039953194581,6.80504646759992,5.17949760013841,14.3752564364972,3.35565212115473,1.45072428402269,1.00828139742739,0.257259436035947,2.0057340795713,1.03134418455488,60.0879888753005,57.1310257613796,61.4816461400994,0.338844532069132,2.66788438833342,0,0,0,12.583204641773,10.373894243682,46.8677047634319,50.0872031210572,48.1644161494665,33.421165175245,29.3755159465646,60.5104548121873,75.3345402203338,70.7798465689716,18.7196997698961,19.4084753889485,18.8936035905179,59.4807157663174,55.8074625974699,44.7985498678814,17.3093459380856,16.3201156909187,17.4190002465564,34.7661730858928,31.7488848182,43.9902692147709,6.28527404665428,6.34801104896998,4.05810284182349,0.860423876981386,0,0,0,0,1.54488862144927,1.1930122580464,0.779358013808606,0.35333957451034,17.6054274720851,1.28326477414318,7.64415719119937,21.3320010945999,0,0,0,1.1418387971906,3.10725460376606,2.9688427812965,5.03107447621794,1.21786191324856,5.07354093963329,3.3158980921577,4.8211369925639,3.39299796590124,0.741584903203122,1.15679485535929,1.76922110389975,4.85300549842228,1.76673214768315,1.45462575940567,0,24.59358694897,38.7476407604892,0.255457055208591,0.599075622529601,1.79970819298022,0.508280908292259,21.7196427136993,33.3975440057597,80.0418222958946,25.0307021076878,19.9458056717658,22.0255327233134,25.7963608277735,8.86002465497752,3.35898820647251,0.505445516867349,2.10441855886474,10.2795149940536,12.4147136394075,13.5046597354012,11.4535661555143,23.6086652055108,18.1921482804487,18.9277483610652,7.76110112217047,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:70762 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6PGN3 | |||
|association_with_transcript=0bp_to_ENSMUST00000029719,ENSMUST00000094144,ENSMUST00000169835,NM_001195496,NM_001195497,NM_001195498,NM_001195499,NM_001195500,NM_027539,uc008prl.3,uc008prm.3,uc008prn.3,uc008pro.3,uc008prp.3,uc008prq.3,uc008prr.3_5end | |||
|cluster_id=chr3:86724752..86724899,- | |||
|description=CAGE_peak_1_at_Dclk2_5end | |||
|id=chr3:86724752..86724899,- | |||
|ontology_enrichment_celltype=CL:0000221!1.17e-18!44;CL:0000133!1.17e-18!44;CL:0002319!3.51e-18!43;CL:0000540!7.72e-18!33;CL:0000047!7.72e-18!33;CL:0000031!7.72e-18!33;CL:0000404!7.72e-18!33;CL:0000055!1.23e-15!50;CL:0000393!1.38e-15!39;CL:0000211!1.38e-15!39;CL:0000117!8.04e-15!23;CL:0000337!8.04e-15!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.18e-18,44;CL:0000133,1.18e-18,44;CL:0002319,3.58e-18,43;CL:0000540,5.19e-18,33;CL:0000047,5.19e-18,33;CL:0000031,5.19e-18,33;CL:0000404,5.19e-18,33;CL:0000393,9.60e-16,39;CL:0000211,9.60e-16,39;CL:0000117,5.82e-15,23;CL:0000337,5.82e-15,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.33e-34!75;UBERON:0001016!2.33e-34!75;UBERON:0001017!2.66e-34!73;UBERON:0005743!2.66e-34!73;UBERON:0004121!2.16e-30!102;UBERON:0000924!2.16e-30!102;UBERON:0006601!2.16e-30!102;UBERON:0002346!5.79e-26!71;UBERON:0003075!5.79e-26!71;UBERON:0007284!5.79e-26!71;UBERON:0001049!2.11e-24!52;UBERON:0005068!2.11e-24!52;UBERON:0006241!2.11e-24!52;UBERON:0007135!2.11e-24!52;UBERON:0000033!2.59e-24!63;UBERON:0000955!5.76e-23!50;UBERON:0006238!5.76e-23!50;UBERON:0002616!2.96e-22!49;UBERON:0007811!1.01e-21!86;UBERON:0003056!1.17e-21!49;UBERON:0000153!9.60e-21!94;UBERON:0002020!2.04e-19!34;UBERON:0003080!2.81e-19!40;UBERON:0002780!9.81e-19!39;UBERON:0001890!9.81e-19!39;UBERON:0006240!9.81e-19!39;UBERON:0002791!2.69e-16!29;UBERON:0003528!2.69e-16!29;UBERON:0001893!2.69e-16!29;UBERON:0000956!9.83e-12!21;UBERON:0001869!9.83e-12!21;UBERON:0000203!9.83e-12!21;UBERON:0002619!2.64e-09!17;UBERON:0000468!2.04e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.67e-34,75;UBERON:0001017,1.93e-34,73;UBERON:0004121,5.62e-32,95;UBERON:0000924,5.62e-32,95;UBERON:0006601,5.62e-32,95;UBERON:0002346,4.58e-28,64;UBERON:0003075,4.58e-28,64;UBERON:0007284,4.58e-28,64;UBERON:0000073,1.28e-25,54;UBERON:0010371,2.91e-25,73;UBERON:0001049,1.91e-24,52;UBERON:0005068,1.91e-24,52;UBERON:0006241,1.91e-24,52;UBERON:0007135,1.91e-24,52;UBERON:0003056,7.20e-22,49;UBERON:0000955,2.11e-21,47;UBERON:0006238,2.11e-21,47;UBERON:0002616,1.07e-20,46;UBERON:0002020,1.32e-19,34;UBERON:0003080,1.83e-19,40;UBERON:0010314,3.19e-19,92;UBERON:0002780,6.46e-19,39;UBERON:0001890,6.46e-19,39;UBERON:0006240,6.46e-19,39;UBERON:0003528,1.88e-16,29;UBERON:0002791,1.88e-16,29;UBERON:0001893,1.88e-16,29;UBERON:0000956,7.67e-12,21;UBERON:0001869,7.67e-12,21;UBERON:0000203,7.67e-12,21;UBERON:0002619,2.19e-09,17 | |||
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| |||
|short_description=p1@Dclk2 | |||
}} |
Revision as of 02:51, 4 August 2015
Short description: | p1@Dclk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dclk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000029719, ENSMUST00000094144, ENSMUST00000169835, NM_001195496, NM_001195497, NM_001195498, NM_001195499, NM_001195500, NM_027539, uc008prl.3, uc008prm.3, uc008prn.3, uc008pro.3, uc008prp.3, uc008prq.3, uc008prr.3_5end |
EntrezGene: | 70762 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.18e-18 | 44 |
neurectodermal cell | 1.18e-18 | 44 |
neural cell | 3.58e-18 | 43 |
neuron | 5.19e-18 | 33 |
neuronal stem cell | 5.19e-18 | 33 |
neuroblast | 5.19e-18 | 33 |
electrically signaling cell | 5.19e-18 | 33 |
electrically responsive cell | 9.60e-16 | 39 |
electrically active cell | 9.60e-16 | 39 |
CNS neuron (sensu Vertebrata) | 5.82e-15 | 23 |
neuroblast (sensu Vertebrata) | 5.82e-15 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.67e-34 | 75 |
central nervous system | 1.93e-34 | 73 |
ectoderm-derived structure | 5.62e-32 | 95 |
ectoderm | 5.62e-32 | 95 |
presumptive ectoderm | 5.62e-32 | 95 |
neurectoderm | 4.58e-28 | 64 |
neural plate | 4.58e-28 | 64 |
presumptive neural plate | 4.58e-28 | 64 |
regional part of nervous system | 1.28e-25 | 54 |
ecto-epithelium | 2.91e-25 | 73 |
neural tube | 1.91e-24 | 52 |
neural rod | 1.91e-24 | 52 |
future spinal cord | 1.91e-24 | 52 |
neural keel | 1.91e-24 | 52 |
pre-chordal neural plate | 7.20e-22 | 49 |
brain | 2.11e-21 | 47 |
future brain | 2.11e-21 | 47 |
regional part of brain | 1.07e-20 | 46 |
gray matter | 1.32e-19 | 34 |
anterior neural tube | 1.83e-19 | 40 |
structure with developmental contribution from neural crest | 3.19e-19 | 92 |
regional part of forebrain | 6.46e-19 | 39 |
forebrain | 6.46e-19 | 39 |
future forebrain | 6.46e-19 | 39 |
brain grey matter | 1.88e-16 | 29 |
regional part of telencephalon | 1.88e-16 | 29 |
telencephalon | 1.88e-16 | 29 |
cerebral cortex | 7.67e-12 | 21 |
cerebral hemisphere | 7.67e-12 | 21 |
pallium | 7.67e-12 | 21 |
regional part of cerebral cortex | 2.19e-09 | 17 |