FFCP PHASE1:Mm9::chr2:25284164..25284206,+: Difference between revisions
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{{FFCP|EntrezGene=11305|HGNC=|MCL_coexpression_id=20|UniProt=A2AJ26|association_with_transcript=0bp_to_NM_007379,uc008isc.1_5end|description=CAGE_peak_1_at_Abca2_5end|id=chr2:25284164..25284206,+|ontology_enrichment_celltype=CL:0000221!2.00e-08!44;CL:0000133!2.00e-08!44;CL:0002319!3.80e-08!43;CL:0000117!1.67e-07!23;CL:0000337!1.67e-07!23;CL:0000055!1.73e-07!50|ontology_enrichment_celltype_v019_2=CL:0000221,2.00e-08,44;CL:0000133,2.00e-08,44;CL:0002319,3.80e-08,43;CL:0000117,1.66e-07,23;CL:0000337,1.66e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.28e-22!73;UBERON:0005743!7.28e-22!73;UBERON:0000073!1.52e-21!75;UBERON:0001016!1.52e-21!75;UBERON:0004121!3.03e-20!102;UBERON:0000924!3.03e-20!102;UBERON:0006601!3.03e-20!102;UBERON:0001049!5.50e-19!52;UBERON:0005068!5.50e-19!52;UBERON:0006241!5.50e-19!52;UBERON:0007135!5.50e-19!52;UBERON:0000033!5.56e-19!63;UBERON:0000955!9.68e-19!50;UBERON:0006238!9.68e-19!50;UBERON:0002616!4.21e-18!49;UBERON:0002346!9.64e-18!71;UBERON:0003075!9.64e-18!71;UBERON:0007284!9.64e-18!71;UBERON:0002020!1.56e-13!34;UBERON:0003056!2.24e-13!49;UBERON:0004111!3.13e-13!122;UBERON:0003080!3.15e-13!40;UBERON:0002780!1.32e-12!39;UBERON:0001890!1.32e-12!39;UBERON:0006240!1.32e-12!39;UBERON:0007811!2.51e-12!86;UBERON:0000025!5.81e-12!114;UBERON:0002791!1.45e-11!29;UBERON:0003528!1.45e-11!29;UBERON:0001893!1.45e-11!29;UBERON:0000153!3.92e-10!94;UBERON:0000956!7.23e-09!21;UBERON:0001869!7.23e-09!21;UBERON:0000203!7.23e-09!21;UBERON:0000477!1.63e-08!154;UBERON:0002619!2.72e-08!17;UBERON:0000475!4.07e-07!200|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.25e-22,73;UBERON:0001016,1.51e-21,75;UBERON:0004121,3.32e-21,95;UBERON:0000924,3.32e-21,95;UBERON:0006601,3.32e-21,95;UBERON:0000073,2.88e-20,54;UBERON:0002346,3.50e-19,64;UBERON:0003075,3.50e-19,64;UBERON:0007284,3.50e-19,64;UBERON:0001049,5.48e-19,52;UBERON:0005068,5.48e-19,52;UBERON:0006241,5.48e-19,52;UBERON:0007135,5.48e-19,52;UBERON:0010371,1.29e-18,73;UBERON:0000955,8.49e-17,47;UBERON:0006238,8.49e-17,47;UBERON:0002616,3.56e-16,46;UBERON:0010314,1.57e-14,92;UBERON:0002020,1.55e-13,34;UBERON:0003056,2.23e-13,49;UBERON:0003080,3.14e-13,40;UBERON:0004111,3.36e-13,122;UBERON:0002780,1.32e-12,39;UBERON:0001890,1.32e-12,39;UBERON:0006240,1.32e-12,39;UBERON:0000025,6.21e-12,114;UBERON:0003528,1.45e-11,29;UBERON:0002791,1.45e-11,29;UBERON:0001893,1.45e-11,29;UBERON:0000956,7.22e-09,21;UBERON:0001869,7.22e-09,21;UBERON:0000203,7.22e-09,21;UBERON:0002619,2.72e-08,17|phase1_expression=4.96461426024861,2.79180326111489,2.27499619694768,5.74682001482977,4.00716583957078,3.3575854382378,3.27057696833736,9.42600261123507,3.37892933164,0.70219357896598,0.68487187290202,0.478632953972018,12.6688540149092,6.8187913886818,2.99798785634096,1.41732687172878,1.39912375625629,4.57420139769445,5.75880621144103,4.66828616977833,12.161190491603,11.3191684369009,11.2315909329742,3.51983330145495,2.98232065387321,1.14846392823004,5.1691439539089,3.44753972297422,0.190023419456374,1.26015064879965,0.886922042621219,8.25539875497521,6.76571266343027,0,1.44425809875637,3.32469290716985,3.47087905646027,2.09265815368454,3.1253413780952,1.0470474879476,2.94115744015507,4.78131839470912,1.45653105909346,6.92432498865675,9.42805460341485,7.52541683862894,5.47673941043627,11.9913836009246,21.3095597252438,23.9148775861369,6.99932108126813,5.75010257459886,4.69791296961662,8.70434570413613,16.1325023588383,0.771778308107841,3.43840127926508,2.57836046138721,7.89034197352431,7.93486468908049,15.8457850876545,4.40497891689872,3.55717918444456,11.2487464660175,4.94433181283487,10.6572017241915,15.2796056364386,13.4476406862544,8.50254820929517,7.1553147315796,5.25812403378455,19.7099179238624,13.2521124570968,5.63457676388789,5.271500906003,11.0306254393203,25.3266526298594,38.9446381159823,35.943928781961,10.2871304429551,6.77008562657831,4.16730696445408,41.039900853203,29.2636557216474,34.6852022453359,11.7851434189467,10.3931326983345,8.94717339961443,3.48340489332647,7.40601289046498,2.89864488701678,12.0459342777394,2.719885334831,11.873470216032,16.8941868536394,8.06448396775204,10.2524426696179,0.681721290312231,1.03914401841148,0.70667914902068,9.85903938436764,0,0,7.11066703153331,1.73192832808971,2.28023878927589,1.01104889002957,6.39429726426736,15.2773351351831,13.3597925158342,1.73485326766136,3.04465478312141,3.68984795609694,3.16517545160507,6.34979018532806,11.9383261763192,1.23597483867187,15.1829324765907,4.42305275974937,4.69123864847487,6.18356251689102,2.42437626567611,0,48.0160507098937,59.0639713213943,3.57639877292028,7.42853771936706,2.99951365496704,5.84523044536098,39.3949381634684,24.2475319493872,12.1884721549478,28.8548371519179,25.0601148183724,35.9473317088039,42.0204871345492,5.09196819251581,15.7996852674818,69.4987585692605,20.412860020988,2.47228841629137,3.90833577536904,3.96136685571768,5.87748789559289,9.66118287948856,7.43059577652129,9.37017245597288,13.1938719076898,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:11305 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2AJ26 | |||
|association_with_transcript=0bp_to_NM_007379,uc008isc.1_5end | |||
|cluster_id=chr2:25284164..25284206,+ | |||
|description=CAGE_peak_1_at_Abca2_5end | |||
|id=chr2:25284164..25284206,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.00e-08!44;CL:0000133!2.00e-08!44;CL:0002319!3.80e-08!43;CL:0000117!1.67e-07!23;CL:0000337!1.67e-07!23;CL:0000055!1.73e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.00e-08,44;CL:0000133,2.00e-08,44;CL:0002319,3.80e-08,43;CL:0000117,1.66e-07,23;CL:0000337,1.66e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.28e-22!73;UBERON:0005743!7.28e-22!73;UBERON:0000073!1.52e-21!75;UBERON:0001016!1.52e-21!75;UBERON:0004121!3.03e-20!102;UBERON:0000924!3.03e-20!102;UBERON:0006601!3.03e-20!102;UBERON:0001049!5.50e-19!52;UBERON:0005068!5.50e-19!52;UBERON:0006241!5.50e-19!52;UBERON:0007135!5.50e-19!52;UBERON:0000033!5.56e-19!63;UBERON:0000955!9.68e-19!50;UBERON:0006238!9.68e-19!50;UBERON:0002616!4.21e-18!49;UBERON:0002346!9.64e-18!71;UBERON:0003075!9.64e-18!71;UBERON:0007284!9.64e-18!71;UBERON:0002020!1.56e-13!34;UBERON:0003056!2.24e-13!49;UBERON:0004111!3.13e-13!122;UBERON:0003080!3.15e-13!40;UBERON:0002780!1.32e-12!39;UBERON:0001890!1.32e-12!39;UBERON:0006240!1.32e-12!39;UBERON:0007811!2.51e-12!86;UBERON:0000025!5.81e-12!114;UBERON:0002791!1.45e-11!29;UBERON:0003528!1.45e-11!29;UBERON:0001893!1.45e-11!29;UBERON:0000153!3.92e-10!94;UBERON:0000956!7.23e-09!21;UBERON:0001869!7.23e-09!21;UBERON:0000203!7.23e-09!21;UBERON:0000477!1.63e-08!154;UBERON:0002619!2.72e-08!17;UBERON:0000475!4.07e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.25e-22,73;UBERON:0001016,1.51e-21,75;UBERON:0004121,3.32e-21,95;UBERON:0000924,3.32e-21,95;UBERON:0006601,3.32e-21,95;UBERON:0000073,2.88e-20,54;UBERON:0002346,3.50e-19,64;UBERON:0003075,3.50e-19,64;UBERON:0007284,3.50e-19,64;UBERON:0001049,5.48e-19,52;UBERON:0005068,5.48e-19,52;UBERON:0006241,5.48e-19,52;UBERON:0007135,5.48e-19,52;UBERON:0010371,1.29e-18,73;UBERON:0000955,8.49e-17,47;UBERON:0006238,8.49e-17,47;UBERON:0002616,3.56e-16,46;UBERON:0010314,1.57e-14,92;UBERON:0002020,1.55e-13,34;UBERON:0003056,2.23e-13,49;UBERON:0003080,3.14e-13,40;UBERON:0004111,3.36e-13,122;UBERON:0002780,1.32e-12,39;UBERON:0001890,1.32e-12,39;UBERON:0006240,1.32e-12,39;UBERON:0000025,6.21e-12,114;UBERON:0003528,1.45e-11,29;UBERON:0002791,1.45e-11,29;UBERON:0001893,1.45e-11,29;UBERON:0000956,7.22e-09,21;UBERON:0001869,7.22e-09,21;UBERON:0000203,7.22e-09,21;UBERON:0002619,2.72e-08,17 | |||
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| |||
|short_description=p1@Abca2 | |||
}} |
Revision as of 20:41, 4 August 2015
Short description: | p1@Abca2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Abca2_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 0bp_to_NM_007379, uc008isc.1_5end |
EntrezGene: | 11305 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.00e-08 | 44 |
neurectodermal cell | 2.00e-08 | 44 |
neural cell | 3.80e-08 | 43 |
CNS neuron (sensu Vertebrata) | 1.66e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.66e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.25e-22 | 73 |
nervous system | 1.51e-21 | 75 |
ectoderm-derived structure | 3.32e-21 | 95 |
ectoderm | 3.32e-21 | 95 |
presumptive ectoderm | 3.32e-21 | 95 |
regional part of nervous system | 2.88e-20 | 54 |
neurectoderm | 3.50e-19 | 64 |
neural plate | 3.50e-19 | 64 |
presumptive neural plate | 3.50e-19 | 64 |
neural tube | 5.48e-19 | 52 |
neural rod | 5.48e-19 | 52 |
future spinal cord | 5.48e-19 | 52 |
neural keel | 5.48e-19 | 52 |
ecto-epithelium | 1.29e-18 | 73 |
brain | 8.49e-17 | 47 |
future brain | 8.49e-17 | 47 |
regional part of brain | 3.56e-16 | 46 |
structure with developmental contribution from neural crest | 1.57e-14 | 92 |
gray matter | 1.55e-13 | 34 |
pre-chordal neural plate | 2.23e-13 | 49 |
anterior neural tube | 3.14e-13 | 40 |
anatomical conduit | 3.36e-13 | 122 |
regional part of forebrain | 1.32e-12 | 39 |
forebrain | 1.32e-12 | 39 |
future forebrain | 1.32e-12 | 39 |
tube | 6.21e-12 | 114 |
brain grey matter | 1.45e-11 | 29 |
regional part of telencephalon | 1.45e-11 | 29 |
telencephalon | 1.45e-11 | 29 |
cerebral cortex | 7.22e-09 | 21 |
cerebral hemisphere | 7.22e-09 | 21 |
pallium | 7.22e-09 | 21 |
regional part of cerebral cortex | 2.72e-08 | 17 |