FFCP PHASE1:Mm9::chr17:56279756..56279807,-: Difference between revisions
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{{FFCP|EntrezGene=20359|HGNC=|MCL_coexpression_id=1|UniProt=O54951,Q3UTK5|association_with_transcript=0bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end|description=CAGE_peak_1_at_Sema6b_5end|id=chr17:56279756..56279807,-|ontology_enrichment_celltype=CL:0000221!5.12e-14!44;CL:0000133!5.12e-14!44;CL:0002319!1.37e-13!43;CL:0000117!1.42e-13!23;CL:0000337!1.42e-13!23;CL:0000540!2.65e-12!33;CL:0000047!2.65e-12!33;CL:0000031!2.65e-12!33;CL:0000404!2.65e-12!33;CL:0000055!1.71e-09!50;CL:0000393!3.12e-08!39;CL:0000211!3.12e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.22e-14,23;CL:0000337,1.22e-14,23;CL:0000221,1.54e-14,44;CL:0000133,1.54e-14,44;CL:0002319,4.45e-14,43;CL:0000540,1.22e-12,33;CL:0000047,1.22e-12,33;CL:0000031,1.22e-12,33;CL:0000404,1.22e-12,33;CL:0000393,2.06e-08,39;CL:0000211,2.06e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.99e-31!73;UBERON:0005743!1.99e-31!73;UBERON:0000073!3.88e-31!75;UBERON:0001016!3.88e-31!75;UBERON:0004121!5.04e-28!102;UBERON:0000924!5.04e-28!102;UBERON:0006601!5.04e-28!102;UBERON:0001049!2.23e-26!52;UBERON:0005068!2.23e-26!52;UBERON:0006241!2.23e-26!52;UBERON:0007135!2.23e-26!52;UBERON:0002346!4.46e-26!71;UBERON:0003075!4.46e-26!71;UBERON:0007284!4.46e-26!71;UBERON:0000955!1.94e-25!50;UBERON:0006238!1.94e-25!50;UBERON:0000033!2.85e-25!63;UBERON:0002616!6.79e-25!49;UBERON:0003056!4.37e-21!49;UBERON:0003080!8.57e-21!40;UBERON:0002020!2.67e-20!34;UBERON:0002780!3.46e-20!39;UBERON:0001890!3.46e-20!39;UBERON:0006240!3.46e-20!39;UBERON:0002791!1.66e-17!29;UBERON:0003528!1.66e-17!29;UBERON:0001893!1.66e-17!29;UBERON:0000153!5.01e-15!94;UBERON:0007811!1.77e-14!86;UBERON:0000956!1.11e-12!21;UBERON:0001869!1.11e-12!21;UBERON:0000203!1.11e-12!21;UBERON:0002619!1.00e-10!17;UBERON:0002021!6.45e-08!10;UBERON:0000411!6.45e-08!10;UBERON:0001950!6.45e-08!10;UBERON:0000468!5.53e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.34e-33,73;UBERON:0001016,4.74e-33,75;UBERON:0000073,2.70e-30,54;UBERON:0001049,1.38e-28,52;UBERON:0005068,1.38e-28,52;UBERON:0006241,1.38e-28,52;UBERON:0007135,1.38e-28,52;UBERON:0004121,1.56e-28,95;UBERON:0000924,1.56e-28,95;UBERON:0006601,1.56e-28,95;UBERON:0002346,2.63e-27,64;UBERON:0003075,2.63e-27,64;UBERON:0007284,2.63e-27,64;UBERON:0000955,2.53e-25,47;UBERON:0006238,2.53e-25,47;UBERON:0002616,9.64e-25,46;UBERON:0010371,9.85e-24,73;UBERON:0003056,8.05e-23,49;UBERON:0003080,1.68e-22,40;UBERON:0002020,5.78e-22,34;UBERON:0002780,7.66e-22,39;UBERON:0001890,7.66e-22,39;UBERON:0006240,7.66e-22,39;UBERON:0003528,6.39e-19,29;UBERON:0002791,6.39e-19,29;UBERON:0001893,6.39e-19,29;UBERON:0010314,3.28e-17,92;UBERON:0000956,1.15e-13,21;UBERON:0001869,1.15e-13,21;UBERON:0000203,1.15e-13,21;UBERON:0002619,1.54e-11,17;UBERON:0002021,1.76e-08,10;UBERON:0000411,1.76e-08,10;UBERON:0001950,1.76e-08,10|phase1_expression=9.12848428497326,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,0.202475267389826,0,1.10411757875383,0.685572168028694,1.69755860719212,9.18467533631554,3.67376519443276,1.30599894569468,0.159992422793407,0.22940928106717,0,0,0,0,0,0.443461021310609,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.550640256485045,2.34717403304412,3.92445281484804,7.68901639570651,5.44403717407994,2.37976916763116,4.31257693094915,0.503347818173209,0.725362142011344,0,0.257259436035947,0.286533439938757,0,38.6424440241832,44.4352422588508,48.8050180699758,1.35537812827653,0,0,0,0,10.4860038681442,17.6740420447915,20.1157847878447,22.680997639724,18.5085965989216,40.8480907697439,39.5354688303388,23.1507610516263,17.1563393122643,37.6879702510109,42.9451935897616,54.9055553766307,45.0067142440793,43.2587023755036,32.8440640532651,30.7338888628488,46.6235608332306,47.8348218526928,48.4370445452488,38.5963446970505,32.3183715413964,36.3478919359336,1.28734528666413,2.56943304363071,13.0439019915755,0.860423876981386,0,0,0,0,2.80888840263504,0,0,0,12.9575946194546,0,0,0,0,0,0,1.7127581957859,1.29468941823586,4.30482203287992,3.99016251562112,4.56698217468212,4.61230994512117,2.71300752994721,0.940709657085638,2.01066546127481,0.247194967734374,0.433798070759735,0.884610551949874,4.85300549842228,1.98757366614354,0,0,22.5441213698891,30.7886659015779,0.255457055208591,0,0,0.381210681219194,42.24096031216,49.8675657072303,54.2826801127574,52.3211203778752,59.3259861006367,43.0121252238289,43.8051410282946,1.32391173005411,0.995255764880744,0.505445516867349,1.68353484709179,1.69156575851515,4.36813998423599,2.52086981727489,4.52114453507145,4.35433594568498,4.74020765053944,4.59138450342671,5.17406741478031,0.862271971731369,3.78212160335639,4.22282697993477,5.69908904311695,3.05851974148158,1.74126083261083,2.67516777330327,1.59227413454795,0,0.257347907114715,0.568326998791185,0.207125772535502,0.469052119962192,0,0.23674473558521,0.196764231747404,0,0.232533944750408,0,0.583826711835847,0.16455984991348,0.985004784474571,2.10778904819225,0.877199924551994,1.09775057645525,2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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20359 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O54951,uniprot:Q3UTK5 | |||
|association_with_transcript=0bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end | |||
|cluster_id=chr17:56279756..56279807,- | |||
|description=CAGE_peak_1_at_Sema6b_5end | |||
|id=chr17:56279756..56279807,- | |||
|ontology_enrichment_celltype=CL:0000221!5.12e-14!44;CL:0000133!5.12e-14!44;CL:0002319!1.37e-13!43;CL:0000117!1.42e-13!23;CL:0000337!1.42e-13!23;CL:0000540!2.65e-12!33;CL:0000047!2.65e-12!33;CL:0000031!2.65e-12!33;CL:0000404!2.65e-12!33;CL:0000055!1.71e-09!50;CL:0000393!3.12e-08!39;CL:0000211!3.12e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.22e-14,23;CL:0000337,1.22e-14,23;CL:0000221,1.54e-14,44;CL:0000133,1.54e-14,44;CL:0002319,4.45e-14,43;CL:0000540,1.22e-12,33;CL:0000047,1.22e-12,33;CL:0000031,1.22e-12,33;CL:0000404,1.22e-12,33;CL:0000393,2.06e-08,39;CL:0000211,2.06e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.99e-31!73;UBERON:0005743!1.99e-31!73;UBERON:0000073!3.88e-31!75;UBERON:0001016!3.88e-31!75;UBERON:0004121!5.04e-28!102;UBERON:0000924!5.04e-28!102;UBERON:0006601!5.04e-28!102;UBERON:0001049!2.23e-26!52;UBERON:0005068!2.23e-26!52;UBERON:0006241!2.23e-26!52;UBERON:0007135!2.23e-26!52;UBERON:0002346!4.46e-26!71;UBERON:0003075!4.46e-26!71;UBERON:0007284!4.46e-26!71;UBERON:0000955!1.94e-25!50;UBERON:0006238!1.94e-25!50;UBERON:0000033!2.85e-25!63;UBERON:0002616!6.79e-25!49;UBERON:0003056!4.37e-21!49;UBERON:0003080!8.57e-21!40;UBERON:0002020!2.67e-20!34;UBERON:0002780!3.46e-20!39;UBERON:0001890!3.46e-20!39;UBERON:0006240!3.46e-20!39;UBERON:0002791!1.66e-17!29;UBERON:0003528!1.66e-17!29;UBERON:0001893!1.66e-17!29;UBERON:0000153!5.01e-15!94;UBERON:0007811!1.77e-14!86;UBERON:0000956!1.11e-12!21;UBERON:0001869!1.11e-12!21;UBERON:0000203!1.11e-12!21;UBERON:0002619!1.00e-10!17;UBERON:0002021!6.45e-08!10;UBERON:0000411!6.45e-08!10;UBERON:0001950!6.45e-08!10;UBERON:0000468!5.53e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.34e-33,73;UBERON:0001016,4.74e-33,75;UBERON:0000073,2.70e-30,54;UBERON:0001049,1.38e-28,52;UBERON:0005068,1.38e-28,52;UBERON:0006241,1.38e-28,52;UBERON:0007135,1.38e-28,52;UBERON:0004121,1.56e-28,95;UBERON:0000924,1.56e-28,95;UBERON:0006601,1.56e-28,95;UBERON:0002346,2.63e-27,64;UBERON:0003075,2.63e-27,64;UBERON:0007284,2.63e-27,64;UBERON:0000955,2.53e-25,47;UBERON:0006238,2.53e-25,47;UBERON:0002616,9.64e-25,46;UBERON:0010371,9.85e-24,73;UBERON:0003056,8.05e-23,49;UBERON:0003080,1.68e-22,40;UBERON:0002020,5.78e-22,34;UBERON:0002780,7.66e-22,39;UBERON:0001890,7.66e-22,39;UBERON:0006240,7.66e-22,39;UBERON:0003528,6.39e-19,29;UBERON:0002791,6.39e-19,29;UBERON:0001893,6.39e-19,29;UBERON:0010314,3.28e-17,92;UBERON:0000956,1.15e-13,21;UBERON:0001869,1.15e-13,21;UBERON:0000203,1.15e-13,21;UBERON:0002619,1.54e-11,17;UBERON:0002021,1.76e-08,10;UBERON:0000411,1.76e-08,10;UBERON:0001950,1.76e-08,10 | |||
|phase1_expression=9.12848428497326,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,0.202475267389826,0,1.10411757875383,0.685572168028694,1.69755860719212,9.18467533631554,3.67376519443276,1.30599894569468,0.159992422793407,0.22940928106717,0,0,0,0,0,0.443461021310609,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.550640256485045,2.34717403304412,3.92445281484804,7.68901639570651,5.44403717407994,2.37976916763116,4.31257693094915,0.503347818173209,0.725362142011344,0,0.257259436035947,0.286533439938757,0,38.6424440241832,44.4352422588508,48.8050180699758,1.35537812827653,0,0,0,0,10.4860038681442,17.6740420447915,20.1157847878447,22.680997639724,18.5085965989216,40.8480907697439,39.5354688303388,23.1507610516263,17.1563393122643,37.6879702510109,42.9451935897616,54.9055553766307,45.0067142440793,43.2587023755036,32.8440640532651,30.7338888628488,46.6235608332306,47.8348218526928,48.4370445452488,38.5963446970505,32.3183715413964,36.3478919359336,1.28734528666413,2.56943304363071,13.0439019915755,0.860423876981386,0,0,0,0,2.80888840263504,0,0,0,12.9575946194546,0,0,0,0,0,0,1.7127581957859,1.29468941823586,4.30482203287992,3.99016251562112,4.56698217468212,4.61230994512117,2.71300752994721,0.940709657085638,2.01066546127481,0.247194967734374,0.433798070759735,0.884610551949874,4.85300549842228,1.98757366614354,0,0,22.5441213698891,30.7886659015779,0.255457055208591,0,0,0.381210681219194,42.24096031216,49.8675657072303,54.2826801127574,52.3211203778752,59.3259861006367,43.0121252238289,43.8051410282946,1.32391173005411,0.995255764880744,0.505445516867349,1.68353484709179,1.69156575851515,4.36813998423599,2.52086981727489,4.52114453507145,4.35433594568498,4.74020765053944,4.59138450342671,5.17406741478031,0.862271971731369,3.78212160335639,4.22282697993477,5.69908904311695,3.05851974148158,1.74126083261083,2.67516777330327,1.59227413454795,0,0.257347907114715,0.568326998791185,0.207125772535502,0.469052119962192,0,0.23674473558521,0.196764231747404,0,0.232533944750408,0,0.583826711835847,0.16455984991348,0.985004784474571,2.10778904819225,0.877199924551994,1.09775057645525,2.68412837520744,50.6798776039547,34.0614266975431,0,0.264450566663544,1.06644125267617,0.928946687441754,1.41754207454303,1.81515172161008,1.33426826306922,2.09248188723815,0.474529061544512,2.30578536613615,0.754005626400808,0.397912944082302,0.58489226135736,0,0.216138049874694,1.1948476395262,0.948339504765408,1.14248512609729,0,0.407302655690628,0.387904974335251,0.98190147846446,1.07502113111237,0.442830443938806,0.156998727841375,1.1105744752962,2.66807364378434,0.83422552858047,2.16214894624523,0,0.811440485554012,1.92941727801933,1.52775511068852,0.575392274901621,1.13494658742525,0.274561413188081,0,1.11642284300551,0.936113019343682,0.757736633841335,0.896987067609561,1.4473305640901,0.554259570499814,0.947457058852424,1.30371981153621,0.848725428875941,1.64283173801951,0.502518772325447,0.952174563544055,1.17080188714679,0.315270288212382,0.221464689648775,0.318909537314974,0.163863314715738,0.518054945597687,2.02508682014116,0,0,0,0.551873492609465,29.3807579677659,33.9913891117389,0,4.03953483526997,0.631016438832513,0.780877488593277,4.52389135238878,2.86762557543062,1.55959071857676,2.83076530788832,2.02405350837447,3.21481443702443,2.76701444562566,28.9189184779626,1.41940085208269,1.78065603667255,3.09485222771795,1.31976098378028,0,1.69946445308487,0.604647113929502,0.754420319023592,1.47650946440386,0.614870295887855,2.06742634534577,1.09060118843252,1.78248689192361,0.632073515871632,1.05418608574999,0,8.17055053809091,1.98067203434441,3.10460841078611,5.35842587578981,5.14286677562593,6.77801506887868,8.39200005070817,12.4830629136986,1.40803024838226,0.63549621259146,0.661585194164886,0.65954501176592,2.74489525383039,1.20625849856312,0.596861720015682,0.492422699235184,0,22.9927374493032,0.512612642393558,3.30218988741156,2.22233432843654,1.50694765603753,0.27338845544205,1.37266903923914,0,0.139951452323658,0.414599921413271,0,1.10717597753397,1.21991680276109,1.72808545314882,0.836353184057875,0.87345025498471,1.21377911746339,0.991841468704031,1.04702376793612,1.03691978633434,0,0,0.598066184175915,0.330916980914195,0.583353565032143,0.516639293910924,0.675824501963113,0.352071715937262,1.0416350787516,2.41176492179135,1.44950472495604,0.576060012515731,0,2.63542779877213,1.54066435747241,2.5984164595559,2.8644271306797,3.9736270956253,1.9231271923195,3.10148007066612,1.21159739937777,1.905170166375,0.705783295957884,0.292373642219257,0.384847366561318,0.701261413089414,1.13365191807606,2.66383144048878,2.15313255862742,4.36500002546604,0.772758376128762,0.750729901804728,0.36630324853453,0.214368379079066,0,43.4858918815141,57.5406545633971,38.956894913879,64.6167965612265,57.546931660734,54.3883606120584,69.527317523876,58.0914352159244,47.1268105343573,54.8825930456929,1.24544817101012,4.78829848081237,7.0000778359195,6.32077464377565,5.8691685535835,5.88299227040045,8.22312892865976,6.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| |||
|short_description=p1@Sema6b | |||
}} |
Revision as of 03:14, 5 August 2015
Short description: | p1@Sema6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sema6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000001256, NM_001130456, uc008dbe.1_5end |
EntrezGene: | 20359 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.22e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-14 | 23 |
ectodermal cell | 1.54e-14 | 44 |
neurectodermal cell | 1.54e-14 | 44 |
neural cell | 4.45e-14 | 43 |
neuron | 1.22e-12 | 33 |
neuronal stem cell | 1.22e-12 | 33 |
neuroblast | 1.22e-12 | 33 |
electrically signaling cell | 1.22e-12 | 33 |
electrically responsive cell | 2.06e-08 | 39 |
electrically active cell | 2.06e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.34e-33 | 73 |
nervous system | 4.74e-33 | 75 |
regional part of nervous system | 2.70e-30 | 54 |
neural tube | 1.38e-28 | 52 |
neural rod | 1.38e-28 | 52 |
future spinal cord | 1.38e-28 | 52 |
neural keel | 1.38e-28 | 52 |
ectoderm-derived structure | 1.56e-28 | 95 |
ectoderm | 1.56e-28 | 95 |
presumptive ectoderm | 1.56e-28 | 95 |
neurectoderm | 2.63e-27 | 64 |
neural plate | 2.63e-27 | 64 |
presumptive neural plate | 2.63e-27 | 64 |
brain | 2.53e-25 | 47 |
future brain | 2.53e-25 | 47 |
regional part of brain | 9.64e-25 | 46 |
ecto-epithelium | 9.85e-24 | 73 |
pre-chordal neural plate | 8.05e-23 | 49 |
anterior neural tube | 1.68e-22 | 40 |
gray matter | 5.78e-22 | 34 |
regional part of forebrain | 7.66e-22 | 39 |
forebrain | 7.66e-22 | 39 |
future forebrain | 7.66e-22 | 39 |
brain grey matter | 6.39e-19 | 29 |
regional part of telencephalon | 6.39e-19 | 29 |
telencephalon | 6.39e-19 | 29 |
structure with developmental contribution from neural crest | 3.28e-17 | 92 |
cerebral cortex | 1.15e-13 | 21 |
cerebral hemisphere | 1.15e-13 | 21 |
pallium | 1.15e-13 | 21 |
regional part of cerebral cortex | 1.54e-11 | 17 |
occipital lobe | 1.76e-08 | 10 |
visual cortex | 1.76e-08 | 10 |
neocortex | 1.76e-08 | 10 |