FFCP PHASE1:Mm9::chr13:41701190..41701232,+: Difference between revisions
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{{FFCP|EntrezGene=621976|HGNC=|MCL_coexpression_id=13|UniProt=P86050|association_with_transcript=-352bp_to_ENSMUST00000129449,NM_001163572,uc011yyr.1_5end|description=CAGE_peak_2_at_Tmem170b_5end|id=chr13:41701190..41701232,+|ontology_enrichment_celltype=CL:0000117!2.18e-14!23;CL:0000337!2.18e-14!23;CL:0000540!2.40e-14!33;CL:0000047!2.40e-14!33;CL:0000031!2.40e-14!33;CL:0000404!2.40e-14!33;CL:0000393!2.18e-09!39;CL:0000211!2.18e-09!39;CL:0000221!9.42e-09!44;CL:0000133!9.42e-09!44;CL:0002319!1.10e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,3.10e-15,23;CL:0000337,3.10e-15,23;CL:0000540,6.24e-15,33;CL:0000047,6.24e-15,33;CL:0000031,6.24e-15,33;CL:0000404,6.24e-15,33;CL:0000393,6.61e-10,39;CL:0000211,6.61e-10,39;CL:0000221,2.49e-09,44;CL:0000133,2.49e-09,44;CL:0002319,2.93e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.63e-19!73;UBERON:0005743!1.63e-19!73;UBERON:0000073!4.55e-19!75;UBERON:0001016!4.55e-19!75;UBERON:0002020!9.66e-17!34;UBERON:0001049!2.84e-16!52;UBERON:0005068!2.84e-16!52;UBERON:0006241!2.84e-16!52;UBERON:0007135!2.84e-16!52;UBERON:0004121!4.17e-16!102;UBERON:0000924!4.17e-16!102;UBERON:0006601!4.17e-16!102;UBERON:0000033!1.41e-15!63;UBERON:0000955!6.67e-15!50;UBERON:0006238!6.67e-15!50;UBERON:0002616!2.97e-14!49;UBERON:0002346!6.75e-14!71;UBERON:0003075!6.75e-14!71;UBERON:0007284!6.75e-14!71;UBERON:0002791!1.17e-13!29;UBERON:0003528!1.17e-13!29;UBERON:0001893!1.17e-13!29;UBERON:0003056!2.18e-13!49;UBERON:0007811!3.97e-13!86;UBERON:0003080!1.40e-12!40;UBERON:0000153!3.97e-12!94;UBERON:0002780!4.96e-12!39;UBERON:0001890!4.96e-12!39;UBERON:0006240!4.96e-12!39;UBERON:0000956!7.36e-09!21;UBERON:0001869!7.36e-09!21;UBERON:0000203!7.36e-09!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.41e-21,73;UBERON:0004121,1.31e-20,95;UBERON:0000924,1.31e-20,95;UBERON:0006601,1.31e-20,95;UBERON:0001016,5.78e-20,75;UBERON:0002346,8.67e-19,64;UBERON:0003075,8.67e-19,64;UBERON:0007284,8.67e-19,64;UBERON:0000073,4.73e-18,54;UBERON:0010371,5.41e-18,73;UBERON:0002020,5.84e-18,34;UBERON:0001049,4.91e-17,52;UBERON:0005068,4.91e-17,52;UBERON:0006241,4.91e-17,52;UBERON:0007135,4.91e-17,52;UBERON:0003528,1.16e-14,29;UBERON:0002791,1.16e-14,29;UBERON:0001893,1.16e-14,29;UBERON:0000955,4.77e-14,47;UBERON:0006238,4.77e-14,47;UBERON:0003056,5.97e-14,49;UBERON:0002616,2.23e-13,46;UBERON:0003080,4.47e-13,40;UBERON:0002780,1.71e-12,39;UBERON:0001890,1.71e-12,39;UBERON:0006240,1.71e-12,39;UBERON:0010314,1.14e-09,92;UBERON:0000956,1.57e-09,21;UBERON:0001869,1.57e-09,21;UBERON:0000203,1.57e-09,21;UBERON:0002619,3.17e-07,17|phase1_expression=1.92178616525753,1.74487703819681,1.36499771816861,0.90739263392049,1.00179145989269,1.84667199103079,1.40167584357315,1.42035655785734,2.25261955442667,1.17032263160997,1.71217968225505,1.59544317990673,2.05440875917447,1.04904482902797,0.333109761815663,1.21485160433896,2.09868563438444,1.26184866143295,1.09691546884591,0.42438965179803,2.29616883407888,0.397163804803541,0,0.47997726838022,0.68822784320151,2.8711598205751,0.430761996159075,1.29282739611533,0.570070258369122,1.26015064879965,0.443461021310609,0,1.84519436275371,0,0.577703239502549,0.997407872150954,0.612508068787107,3.76678467663217,1.5626706890476,2.61761871986899,1.76469446409304,3.41522742479223,5.34061388334269,0.251793635951155,0.506884656097573,0.917733760808408,0,0.872100625521786,0.219686182734472,0.58328969722285,1.1198913730029,0,1.34226084846189,0.725362142011344,1.00828139742739,0,0.573066879877513,0.515672092277442,8.09265843438391,4.23192783417626,8.23980824558033,0.338844532069132,0,2.2497492932035,0,2.1314403448383,0.299600110518405,2.30530983192933,7.36196247390191,7.56033254657468,6.52007380189284,5.71301968807607,4.41737081903227,5.75706756310284,7.57179221044067,3.67687514644008,2.20231761998777,9.06580100404833,7.37311359629969,7.64940468835124,8.87430142943374,5.73004707612436,4.18774498502071,10.1297269805702,7.79271063661732,9.1334861496837,9.11178757114259,8.01517617048792,0.908714319998209,1.43585964202892,0.869593466105033,2.58127163094416,0.679971333707751,0,1.29955283489534,0.896053774194671,1.68533304158102,0.170430322578058,0,0.70667914902068,1.69012103732017,1.28326477414318,0,0,1.08245520505607,0.506719730950197,1.01104889002957,0.68510327831436,0.776813650941515,0.29688427812965,0.520455980298408,0.304465478312141,1.38369298353635,0.150722640552623,0.940709657085638,0.753999547978053,3.21353458054686,0.86759614151947,2.65383165584962,4.20593809863264,1.98757366614354,1.45462575940567,0,3.22058876712702,3.77004072264219,0,0.599075622529601,0.599902730993408,0.254140454146129,7.18995069143149,7.32000964509802,14.3245961408665,5.38855392596057,8.43861009190091,4.57133698031032,5.67844420737152,1.52759045775474,1.24406970610093,1.26361379216837,1.89397670297827,1.17108398666433,1.14951052216736,1.0803727788321,1.65775299619287,3.6739709541717,2.69038812598185,2.99845518591132,3.10444044886819,0.431135985865684,1.1346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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:621976 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P86050 | |||
|association_with_transcript=-352bp_to_ENSMUST00000129449,NM_001163572,uc011yyr.1_5end | |||
|cluster_id=chr13:41701190..41701232,+ | |||
|description=CAGE_peak_2_at_Tmem170b_5end | |||
|id=chr13:41701190..41701232,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.18e-14!23;CL:0000337!2.18e-14!23;CL:0000540!2.40e-14!33;CL:0000047!2.40e-14!33;CL:0000031!2.40e-14!33;CL:0000404!2.40e-14!33;CL:0000393!2.18e-09!39;CL:0000211!2.18e-09!39;CL:0000221!9.42e-09!44;CL:0000133!9.42e-09!44;CL:0002319!1.10e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.10e-15,23;CL:0000337,3.10e-15,23;CL:0000540,6.24e-15,33;CL:0000047,6.24e-15,33;CL:0000031,6.24e-15,33;CL:0000404,6.24e-15,33;CL:0000393,6.61e-10,39;CL:0000211,6.61e-10,39;CL:0000221,2.49e-09,44;CL:0000133,2.49e-09,44;CL:0002319,2.93e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.63e-19!73;UBERON:0005743!1.63e-19!73;UBERON:0000073!4.55e-19!75;UBERON:0001016!4.55e-19!75;UBERON:0002020!9.66e-17!34;UBERON:0001049!2.84e-16!52;UBERON:0005068!2.84e-16!52;UBERON:0006241!2.84e-16!52;UBERON:0007135!2.84e-16!52;UBERON:0004121!4.17e-16!102;UBERON:0000924!4.17e-16!102;UBERON:0006601!4.17e-16!102;UBERON:0000033!1.41e-15!63;UBERON:0000955!6.67e-15!50;UBERON:0006238!6.67e-15!50;UBERON:0002616!2.97e-14!49;UBERON:0002346!6.75e-14!71;UBERON:0003075!6.75e-14!71;UBERON:0007284!6.75e-14!71;UBERON:0002791!1.17e-13!29;UBERON:0003528!1.17e-13!29;UBERON:0001893!1.17e-13!29;UBERON:0003056!2.18e-13!49;UBERON:0007811!3.97e-13!86;UBERON:0003080!1.40e-12!40;UBERON:0000153!3.97e-12!94;UBERON:0002780!4.96e-12!39;UBERON:0001890!4.96e-12!39;UBERON:0006240!4.96e-12!39;UBERON:0000956!7.36e-09!21;UBERON:0001869!7.36e-09!21;UBERON:0000203!7.36e-09!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.41e-21,73;UBERON:0004121,1.31e-20,95;UBERON:0000924,1.31e-20,95;UBERON:0006601,1.31e-20,95;UBERON:0001016,5.78e-20,75;UBERON:0002346,8.67e-19,64;UBERON:0003075,8.67e-19,64;UBERON:0007284,8.67e-19,64;UBERON:0000073,4.73e-18,54;UBERON:0010371,5.41e-18,73;UBERON:0002020,5.84e-18,34;UBERON:0001049,4.91e-17,52;UBERON:0005068,4.91e-17,52;UBERON:0006241,4.91e-17,52;UBERON:0007135,4.91e-17,52;UBERON:0003528,1.16e-14,29;UBERON:0002791,1.16e-14,29;UBERON:0001893,1.16e-14,29;UBERON:0000955,4.77e-14,47;UBERON:0006238,4.77e-14,47;UBERON:0003056,5.97e-14,49;UBERON:0002616,2.23e-13,46;UBERON:0003080,4.47e-13,40;UBERON:0002780,1.71e-12,39;UBERON:0001890,1.71e-12,39;UBERON:0006240,1.71e-12,39;UBERON:0010314,1.14e-09,92;UBERON:0000956,1.57e-09,21;UBERON:0001869,1.57e-09,21;UBERON:0000203,1.57e-09,21;UBERON:0002619,3.17e-07,17 | |||
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| |||
|short_description=p2@Tmem170b | |||
}} |
Revision as of 23:43, 5 August 2015
Short description: | p2@Tmem170b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tmem170b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -352bp_to_ENSMUST00000129449, NM_001163572, uc011yyr.1_5end |
EntrezGene: | 621976 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.10e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.10e-15 | 23 |
neuron | 6.24e-15 | 33 |
neuronal stem cell | 6.24e-15 | 33 |
neuroblast | 6.24e-15 | 33 |
electrically signaling cell | 6.24e-15 | 33 |
electrically responsive cell | 6.61e-10 | 39 |
electrically active cell | 6.61e-10 | 39 |
ectodermal cell | 2.49e-09 | 44 |
neurectodermal cell | 2.49e-09 | 44 |
neural cell | 2.93e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.41e-21 | 73 |
ectoderm-derived structure | 1.31e-20 | 95 |
ectoderm | 1.31e-20 | 95 |
presumptive ectoderm | 1.31e-20 | 95 |
nervous system | 5.78e-20 | 75 |
neurectoderm | 8.67e-19 | 64 |
neural plate | 8.67e-19 | 64 |
presumptive neural plate | 8.67e-19 | 64 |
regional part of nervous system | 4.73e-18 | 54 |
ecto-epithelium | 5.41e-18 | 73 |
gray matter | 5.84e-18 | 34 |
neural tube | 4.91e-17 | 52 |
neural rod | 4.91e-17 | 52 |
future spinal cord | 4.91e-17 | 52 |
neural keel | 4.91e-17 | 52 |
brain grey matter | 1.16e-14 | 29 |
regional part of telencephalon | 1.16e-14 | 29 |
telencephalon | 1.16e-14 | 29 |
brain | 4.77e-14 | 47 |
future brain | 4.77e-14 | 47 |
pre-chordal neural plate | 5.97e-14 | 49 |
regional part of brain | 2.23e-13 | 46 |
anterior neural tube | 4.47e-13 | 40 |
regional part of forebrain | 1.71e-12 | 39 |
forebrain | 1.71e-12 | 39 |
future forebrain | 1.71e-12 | 39 |
structure with developmental contribution from neural crest | 1.14e-09 | 92 |
cerebral cortex | 1.57e-09 | 21 |
cerebral hemisphere | 1.57e-09 | 21 |
pallium | 1.57e-09 | 21 |
regional part of cerebral cortex | 3.17e-07 | 17 |