FFCP PHASE1:Mm9::chr1:95532218..95532229,-: Difference between revisions
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{{FFCP|EntrezGene=59041|HGNC=|MCL_coexpression_id=1355|UniProt=|association_with_transcript=-12bp_to_ENSMUST00000151068_5end|description=CAGE_peak_4_at_Stk25_5end|id=chr1:95532218..95532229,-|ontology_enrichment_celltype=CL:0000117!2.81e-14!23;CL:0000337!2.81e-14!23;CL:0000540!2.81e-11!33;CL:0000047!2.81e-11!33;CL:0000031!2.81e-11!33;CL:0000404!2.81e-11!33;CL:0000393!4.13e-11!39;CL:0000211!4.13e-11!39;CL:0000221!1.22e-09!44;CL:0000133!1.22e-09!44;CL:0002319!1.41e-09!43;CL:0000055!6.69e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.75e-14,23;CL:0000337,2.75e-14,23;CL:0000540,2.76e-11,33;CL:0000047,2.76e-11,33;CL:0000031,2.76e-11,33;CL:0000404,2.76e-11,33;CL:0000393,4.06e-11,39;CL:0000211,4.06e-11,39;CL:0000221,1.20e-09,44;CL:0000133,1.20e-09,44;CL:0002319,1.39e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.68e-24!75;UBERON:0001016!1.68e-24!75;UBERON:0001017!3.21e-24!73;UBERON:0005743!3.21e-24!73;UBERON:0001049!1.39e-23!52;UBERON:0005068!1.39e-23!52;UBERON:0006241!1.39e-23!52;UBERON:0007135!1.39e-23!52;UBERON:0000955!4.44e-23!50;UBERON:0006238!4.44e-23!50;UBERON:0002616!2.31e-22!49;UBERON:0000033!5.55e-22!63;UBERON:0002346!6.00e-22!71;UBERON:0003075!6.00e-22!71;UBERON:0007284!6.00e-22!71;UBERON:0004121!8.03e-22!102;UBERON:0000924!8.03e-22!102;UBERON:0006601!8.03e-22!102;UBERON:0003080!5.11e-20!40;UBERON:0003056!1.43e-19!49;UBERON:0002780!2.35e-19!39;UBERON:0001890!2.35e-19!39;UBERON:0006240!2.35e-19!39;UBERON:0002020!1.19e-18!34;UBERON:0002791!6.00e-16!29;UBERON:0003528!6.00e-16!29;UBERON:0001893!6.00e-16!29;UBERON:0000956!5.44e-11!21;UBERON:0001869!5.44e-11!21;UBERON:0000203!5.44e-11!21;UBERON:0000025!5.53e-10!114;UBERON:0004111!6.06e-10!122;UBERON:0007811!3.07e-09!86;UBERON:0002619!4.14e-09!17;UBERON:0000153!1.58e-08!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.64e-25,54;UBERON:0001016,1.61e-24,75;UBERON:0001017,3.07e-24,73;UBERON:0001049,1.33e-23,52;UBERON:0005068,1.33e-23,52;UBERON:0006241,1.33e-23,52;UBERON:0007135,1.33e-23,52;UBERON:0010314,7.60e-23,92;UBERON:0002346,2.58e-22,64;UBERON:0003075,2.58e-22,64;UBERON:0007284,2.58e-22,64;UBERON:0004121,1.43e-21,95;UBERON:0000924,1.43e-21,95;UBERON:0006601,1.43e-21,95;UBERON:0000955,2.44e-21,47;UBERON:0006238,2.44e-21,47;UBERON:0002616,1.24e-20,46;UBERON:0003080,4.93e-20,40;UBERON:0003056,1.38e-19,49;UBERON:0002780,2.27e-19,39;UBERON:0001890,2.27e-19,39;UBERON:0006240,2.27e-19,39;UBERON:0002020,1.15e-18,34;UBERON:0010371,1.60e-18,73;UBERON:0003528,5.84e-16,29;UBERON:0002791,5.84e-16,29;UBERON:0001893,5.84e-16,29;UBERON:0000956,5.35e-11,21;UBERON:0001869,5.35e-11,21;UBERON:0000203,5.35e-11,21;UBERON:0000025,5.21e-10,114;UBERON:0004111,5.71e-10,122;UBERON:0002619,4.08e-09,17|phase1_expression=3.36312578920067,2.79180326111489,4.54999239389536,2.72217790176147,2.50447864973174,3.86122325397347,2.33612640595526,1.16210991097419,0.985521055061667,0.936258105287974,0.34243593645101,0.717949430958028,1.54080656938085,1.39872643870396,0.666219523631325,1.82227740650843,2.09868563438444,0.788655413395594,0.411343300817216,1.69755860719212,4.67738095830884,1.68794617041505,1.30599894569468,3.03985603307473,1.60586496747019,2.29692785646008,3.4460959692726,1.939241094173,0.570070258369122,3.02436155711917,2.43903561720835,3.17515336729816,1.84519436275371,0,3.75507105676657,1.82858109894342,3.06254034393554,0.837063261473815,0.7813353445238,1.0470474879476,1.17646297606203,0.683045484958446,0.971020706062307,2.01434908760924,2.53442328048786,4.77221555620372,1.56478268869608,3.48840250208714,3.73466510648602,4.6663175777828,3.21968769738334,2.87505128729943,0.167782606057736,0.725362142011344,1.34437519656986,3.8588915405392,5.15760191889762,6.70373719960675,8.09265843438391,10.5798195854407,17.1134478946668,3.72728985276045,2.66788438833342,1.3498495759221,1.97773272513395,0.7104801149461,3.29560121570245,2.30530983192933,7.56934169851887,7.2903206699113,8.2026734927039,7.9982275633065,8.39300455616131,7.96190194897201,10.4471563409878,10.1114066527102,5.50579404996943,9.57655035638908,9.06278546211836,11.3422207447967,14.2720724019759,16.6692278578163,8.65467296904281,7.87867654044352,9.93188610549266,7.66034322231536,6.97621235915604,8.94717339961443,3.7863096666592,4.53429360640713,1.44932244350839,0,1.3599426674155,0.539703191637817,1.94932925234301,1.34408066129201,2.38755514223978,2.55645483867087,3.37721805983729,5.65343319216544,3.94361575374705,1.28326477414318,7.64415719119937,42.6640021891999,2.59789249213457,3.04031838570118,1.51657333504435,2.51204535381932,0.776813650941515,5.04703272820404,3.64319186208885,3.04465478312141,2.7673859670727,2.86373017049983,4.35078216402108,4.77533047052767,4.44950941921873,0.86759614151947,0,4.04417124868523,3.3126227769059,0.969750506270444,3.72783522436244,9.07620470735796,5.44561437714983,1.78819938646014,1.07833612055328,0.599902730993408,1.27070227073065,9.28701964309901,8.23501085073528,9.1727677042391,6.95297280769106,10.995764665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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:59041 | |||
|HGNC= | |||
|MCL_coexpression_id=1355 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_ENSMUST00000151068_5end | |||
|cluster_id=chr1:95532218..95532229,- | |||
|description=CAGE_peak_4_at_Stk25_5end | |||
|id=chr1:95532218..95532229,- | |||
|ontology_enrichment_celltype=CL:0000117!2.81e-14!23;CL:0000337!2.81e-14!23;CL:0000540!2.81e-11!33;CL:0000047!2.81e-11!33;CL:0000031!2.81e-11!33;CL:0000404!2.81e-11!33;CL:0000393!4.13e-11!39;CL:0000211!4.13e-11!39;CL:0000221!1.22e-09!44;CL:0000133!1.22e-09!44;CL:0002319!1.41e-09!43;CL:0000055!6.69e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.75e-14,23;CL:0000337,2.75e-14,23;CL:0000540,2.76e-11,33;CL:0000047,2.76e-11,33;CL:0000031,2.76e-11,33;CL:0000404,2.76e-11,33;CL:0000393,4.06e-11,39;CL:0000211,4.06e-11,39;CL:0000221,1.20e-09,44;CL:0000133,1.20e-09,44;CL:0002319,1.39e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.68e-24!75;UBERON:0001016!1.68e-24!75;UBERON:0001017!3.21e-24!73;UBERON:0005743!3.21e-24!73;UBERON:0001049!1.39e-23!52;UBERON:0005068!1.39e-23!52;UBERON:0006241!1.39e-23!52;UBERON:0007135!1.39e-23!52;UBERON:0000955!4.44e-23!50;UBERON:0006238!4.44e-23!50;UBERON:0002616!2.31e-22!49;UBERON:0000033!5.55e-22!63;UBERON:0002346!6.00e-22!71;UBERON:0003075!6.00e-22!71;UBERON:0007284!6.00e-22!71;UBERON:0004121!8.03e-22!102;UBERON:0000924!8.03e-22!102;UBERON:0006601!8.03e-22!102;UBERON:0003080!5.11e-20!40;UBERON:0003056!1.43e-19!49;UBERON:0002780!2.35e-19!39;UBERON:0001890!2.35e-19!39;UBERON:0006240!2.35e-19!39;UBERON:0002020!1.19e-18!34;UBERON:0002791!6.00e-16!29;UBERON:0003528!6.00e-16!29;UBERON:0001893!6.00e-16!29;UBERON:0000956!5.44e-11!21;UBERON:0001869!5.44e-11!21;UBERON:0000203!5.44e-11!21;UBERON:0000025!5.53e-10!114;UBERON:0004111!6.06e-10!122;UBERON:0007811!3.07e-09!86;UBERON:0002619!4.14e-09!17;UBERON:0000153!1.58e-08!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.64e-25,54;UBERON:0001016,1.61e-24,75;UBERON:0001017,3.07e-24,73;UBERON:0001049,1.33e-23,52;UBERON:0005068,1.33e-23,52;UBERON:0006241,1.33e-23,52;UBERON:0007135,1.33e-23,52;UBERON:0010314,7.60e-23,92;UBERON:0002346,2.58e-22,64;UBERON:0003075,2.58e-22,64;UBERON:0007284,2.58e-22,64;UBERON:0004121,1.43e-21,95;UBERON:0000924,1.43e-21,95;UBERON:0006601,1.43e-21,95;UBERON:0000955,2.44e-21,47;UBERON:0006238,2.44e-21,47;UBERON:0002616,1.24e-20,46;UBERON:0003080,4.93e-20,40;UBERON:0003056,1.38e-19,49;UBERON:0002780,2.27e-19,39;UBERON:0001890,2.27e-19,39;UBERON:0006240,2.27e-19,39;UBERON:0002020,1.15e-18,34;UBERON:0010371,1.60e-18,73;UBERON:0003528,5.84e-16,29;UBERON:0002791,5.84e-16,29;UBERON:0001893,5.84e-16,29;UBERON:0000956,5.35e-11,21;UBERON:0001869,5.35e-11,21;UBERON:0000203,5.35e-11,21;UBERON:0000025,5.21e-10,114;UBERON:0004111,5.71e-10,122;UBERON:0002619,4.08e-09,17 | |||
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| |||
|short_description=p4@Stk25 | |||
}} |
Revision as of 05:57, 6 August 2015
Short description: | p4@Stk25 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Stk25_5end |
Coexpression cluster: | MCL_coexpression_mm9:1355 |
Association with transcript: | -12bp_to_ENSMUST00000151068_5end |
EntrezGene: | 59041 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.75e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.75e-14 | 23 |
neuron | 2.76e-11 | 33 |
neuronal stem cell | 2.76e-11 | 33 |
neuroblast | 2.76e-11 | 33 |
electrically signaling cell | 2.76e-11 | 33 |
electrically responsive cell | 4.06e-11 | 39 |
electrically active cell | 4.06e-11 | 39 |
ectodermal cell | 1.20e-09 | 44 |
neurectodermal cell | 1.20e-09 | 44 |
neural cell | 1.39e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.64e-25 | 54 |
nervous system | 1.61e-24 | 75 |
central nervous system | 3.07e-24 | 73 |
neural tube | 1.33e-23 | 52 |
neural rod | 1.33e-23 | 52 |
future spinal cord | 1.33e-23 | 52 |
neural keel | 1.33e-23 | 52 |
structure with developmental contribution from neural crest | 7.60e-23 | 92 |
neurectoderm | 2.58e-22 | 64 |
neural plate | 2.58e-22 | 64 |
presumptive neural plate | 2.58e-22 | 64 |
ectoderm-derived structure | 1.43e-21 | 95 |
ectoderm | 1.43e-21 | 95 |
presumptive ectoderm | 1.43e-21 | 95 |
brain | 2.44e-21 | 47 |
future brain | 2.44e-21 | 47 |
regional part of brain | 1.24e-20 | 46 |
anterior neural tube | 4.93e-20 | 40 |
pre-chordal neural plate | 1.38e-19 | 49 |
regional part of forebrain | 2.27e-19 | 39 |
forebrain | 2.27e-19 | 39 |
future forebrain | 2.27e-19 | 39 |
gray matter | 1.15e-18 | 34 |
ecto-epithelium | 1.60e-18 | 73 |
brain grey matter | 5.84e-16 | 29 |
regional part of telencephalon | 5.84e-16 | 29 |
telencephalon | 5.84e-16 | 29 |
cerebral cortex | 5.35e-11 | 21 |
cerebral hemisphere | 5.35e-11 | 21 |
pallium | 5.35e-11 | 21 |
tube | 5.21e-10 | 114 |
anatomical conduit | 5.71e-10 | 122 |
regional part of cerebral cortex | 4.08e-09 | 17 |