FFCP PHASE1:Mm9::chrX:53863020..53863041,+: Difference between revisions
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{{FFCP|EntrezGene=236794|HGNC=|MCL_coexpression_id=13|UniProt=A1L3P4,B0QZV3|association_with_transcript=0bp_to_ENSMUST00000077741,ENSMUST00000114784_5end|description=CAGE_peak_1_at_Slc9a6_5end|id=chrX:53863020..53863041,+|ontology_enrichment_celltype=CL:0000117!1.96e-13!23;CL:0000337!1.96e-13!23;CL:0000540!4.90e-12!33;CL:0000047!4.90e-12!33;CL:0000031!4.90e-12!33;CL:0000404!4.90e-12!33;CL:0000393!2.72e-10!39;CL:0000211!2.72e-10!39;CL:0000221!1.32e-08!44;CL:0000133!1.32e-08!44;CL:0002319!2.63e-08!43;CL:0000055!5.93e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.88e-13,23;CL:0000337,1.88e-13,23;CL:0000540,5.64e-12,33;CL:0000047,5.64e-12,33;CL:0000031,5.64e-12,33;CL:0000404,5.64e-12,33;CL:0000393,3.06e-10,39;CL:0000211,3.06e-10,39;CL:0000221,1.68e-08,44;CL:0000133,1.68e-08,44;CL:0002319,3.33e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.99e-21!73;UBERON:0005743!1.99e-21!73;UBERON:0000073!2.10e-20!75;UBERON:0001016!2.10e-20!75;UBERON:0001049!2.79e-19!52;UBERON:0005068!2.79e-19!52;UBERON:0006241!2.79e-19!52;UBERON:0007135!2.79e-19!52;UBERON:0002346!2.89e-19!71;UBERON:0003075!2.89e-19!71;UBERON:0007284!2.89e-19!71;UBERON:0004121!6.07e-19!102;UBERON:0000924!6.07e-19!102;UBERON:0006601!6.07e-19!102;UBERON:0000033!6.91e-19!63;UBERON:0000955!1.18e-17!50;UBERON:0006238!1.18e-17!50;UBERON:0007811!1.51e-17!86;UBERON:0000153!2.15e-17!94;UBERON:0002616!3.13e-17!49;UBERON:0002020!2.13e-16!34;UBERON:0003056!3.24e-16!49;UBERON:0003080!6.72e-15!40;UBERON:0002780!2.65e-14!39;UBERON:0001890!2.65e-14!39;UBERON:0006240!2.65e-14!39;UBERON:0002791!4.35e-13!29;UBERON:0003528!4.35e-13!29;UBERON:0001893!4.35e-13!29;UBERON:0000956!2.51e-08!21;UBERON:0001869!2.51e-08!21;UBERON:0000203!2.51e-08!21;UBERON:0002619!1.75e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.66e-21,73;UBERON:0002346,5.23e-21,64;UBERON:0003075,5.23e-21,64;UBERON:0007284,5.23e-21,64;UBERON:0000073,1.24e-20,54;UBERON:0001016,2.78e-20,75;UBERON:0004121,7.54e-20,95;UBERON:0000924,7.54e-20,95;UBERON:0006601,7.54e-20,95;UBERON:0001049,2.64e-19,52;UBERON:0005068,2.64e-19,52;UBERON:0006241,2.64e-19,52;UBERON:0007135,2.64e-19,52;UBERON:0010371,5.71e-19,73;UBERON:0002020,2.03e-16,34;UBERON:0003056,3.09e-16,49;UBERON:0000955,6.40e-16,47;UBERON:0006238,6.40e-16,47;UBERON:0002616,1.66e-15,46;UBERON:0003080,6.44e-15,40;UBERON:0002780,2.54e-14,39;UBERON:0001890,2.54e-14,39;UBERON:0006240,2.54e-14,39;UBERON:0003528,4.20e-13,29;UBERON:0002791,4.20e-13,29;UBERON:0001893,4.20e-13,29;UBERON:0010314,6.28e-12,92;UBERON:0000956,2.46e-08,21;UBERON:0001869,2.46e-08,21;UBERON:0000203,2.46e-08,21;UBERON:0002619,1.72e-07,17|phase1_expression=8.80818659076367,1.74487703819681,0.909998478779072,1.20985684522732,0.500895729946347,0.671517087647559,0.700837921786577,7.74739940649458,9.29205566201001,13.5757425266756,2.05461561870606,2.71225340584144,5.9920255475922,7.60557501045277,0.666219523631325,0.404950534779652,0,1.73504190947031,2.33094537129756,1.27316895539409,4.93251082876205,2.08510997521859,1.82839852397255,0.319984845586813,1.14704640533585,1.72269589234506,0.86152399231815,0.430942465371778,1.52018735565099,2.52030129759931,0.443461021310609,0,0,0,0.577703239502549,0.664938581433969,1.02084678131185,2.51118978442145,2.3440060335714,2.61761871986899,2.94115744015507,3.41522742479223,2.91306211818692,3.77690453926732,4.25783111121961,2.9367480345869,2.34717403304412,1.09012578190223,3.29529274101708,3.11087838518853,2.93971485413261,2.87505128729943,0.838913030288682,1.45072428402269,2.01656279485478,2.82985379639542,1.71920063963254,1.03134418455488,14.566785181891,21.1596391708813,20.9164363157039,1.69422266034566,3.55717918444456,0,0,0,0.898800331555214,2.30530983192933,4.45865332926454,3.37514845829227,5.25812403378455,13.7112472513826,15.9025349485162,7.22695715368229,7.18841032636773,8.27296907949019,13.2139057199266,9.57655035638908,9.36999852863085,15.9582408153535,17.2911646408554,15.6274011167028,8.37548997004143,14.069065250792,16.9606055032259,16.4992007865254,17.938831780687,17.7079473534036,2.04460721999597,2.11600368298999,3.76823835312181,1.72084775396277,1.3599426674155,1.61910957491345,4.54843492213368,2.68816132258401,3.65155492342555,2.21559419351475,1.55871602761721,1.41335829804136,5.35204995151386,1.28326477414318,2.54805239706646,7.11066703153331,0.865964164044856,1.77351905832569,2.02209778005913,2.74041311325744,2.84831672011889,4.89859058913922,2.77576522825817,2.43572382649713,2.53677046981664,3.01445281105245,1.64624189989987,2.63899841792318,27.6858363862499,5.20557684911682,2.65383165584962,2.10296904931632,2.87093973998512,1.93950101254089,1.86391761218122,8.49064311333487,8.3778682725382,0.766371165625774,1.67741174308288,1.79970819298022,1.39777249780371,11.6836698735762,10.0650132620098,15.5811396619952,8.16974304903699,9.2057564638919,8.51930982694196,10.2211995732687,3.7680564624617,6.71797641294502,19.2069296409593,2.73574412652416,2.60240885925407,4.8279441931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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:236794 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A1L3P4,uniprot:B0QZV3 | |||
|association_with_transcript=0bp_to_ENSMUST00000077741,ENSMUST00000114784_5end | |||
|cluster_id=chrX:53863020..53863041,+ | |||
|description=CAGE_peak_1_at_Slc9a6_5end | |||
|id=chrX:53863020..53863041,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.96e-13!23;CL:0000337!1.96e-13!23;CL:0000540!4.90e-12!33;CL:0000047!4.90e-12!33;CL:0000031!4.90e-12!33;CL:0000404!4.90e-12!33;CL:0000393!2.72e-10!39;CL:0000211!2.72e-10!39;CL:0000221!1.32e-08!44;CL:0000133!1.32e-08!44;CL:0002319!2.63e-08!43;CL:0000055!5.93e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.88e-13,23;CL:0000337,1.88e-13,23;CL:0000540,5.64e-12,33;CL:0000047,5.64e-12,33;CL:0000031,5.64e-12,33;CL:0000404,5.64e-12,33;CL:0000393,3.06e-10,39;CL:0000211,3.06e-10,39;CL:0000221,1.68e-08,44;CL:0000133,1.68e-08,44;CL:0002319,3.33e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.99e-21!73;UBERON:0005743!1.99e-21!73;UBERON:0000073!2.10e-20!75;UBERON:0001016!2.10e-20!75;UBERON:0001049!2.79e-19!52;UBERON:0005068!2.79e-19!52;UBERON:0006241!2.79e-19!52;UBERON:0007135!2.79e-19!52;UBERON:0002346!2.89e-19!71;UBERON:0003075!2.89e-19!71;UBERON:0007284!2.89e-19!71;UBERON:0004121!6.07e-19!102;UBERON:0000924!6.07e-19!102;UBERON:0006601!6.07e-19!102;UBERON:0000033!6.91e-19!63;UBERON:0000955!1.18e-17!50;UBERON:0006238!1.18e-17!50;UBERON:0007811!1.51e-17!86;UBERON:0000153!2.15e-17!94;UBERON:0002616!3.13e-17!49;UBERON:0002020!2.13e-16!34;UBERON:0003056!3.24e-16!49;UBERON:0003080!6.72e-15!40;UBERON:0002780!2.65e-14!39;UBERON:0001890!2.65e-14!39;UBERON:0006240!2.65e-14!39;UBERON:0002791!4.35e-13!29;UBERON:0003528!4.35e-13!29;UBERON:0001893!4.35e-13!29;UBERON:0000956!2.51e-08!21;UBERON:0001869!2.51e-08!21;UBERON:0000203!2.51e-08!21;UBERON:0002619!1.75e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.66e-21,73;UBERON:0002346,5.23e-21,64;UBERON:0003075,5.23e-21,64;UBERON:0007284,5.23e-21,64;UBERON:0000073,1.24e-20,54;UBERON:0001016,2.78e-20,75;UBERON:0004121,7.54e-20,95;UBERON:0000924,7.54e-20,95;UBERON:0006601,7.54e-20,95;UBERON:0001049,2.64e-19,52;UBERON:0005068,2.64e-19,52;UBERON:0006241,2.64e-19,52;UBERON:0007135,2.64e-19,52;UBERON:0010371,5.71e-19,73;UBERON:0002020,2.03e-16,34;UBERON:0003056,3.09e-16,49;UBERON:0000955,6.40e-16,47;UBERON:0006238,6.40e-16,47;UBERON:0002616,1.66e-15,46;UBERON:0003080,6.44e-15,40;UBERON:0002780,2.54e-14,39;UBERON:0001890,2.54e-14,39;UBERON:0006240,2.54e-14,39;UBERON:0003528,4.20e-13,29;UBERON:0002791,4.20e-13,29;UBERON:0001893,4.20e-13,29;UBERON:0010314,6.28e-12,92;UBERON:0000956,2.46e-08,21;UBERON:0001869,2.46e-08,21;UBERON:0000203,2.46e-08,21;UBERON:0002619,1.72e-07,17 | |||
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| |||
|short_description=p1@Slc9a6 | |||
}} |
Revision as of 08:16, 6 August 2015
Short description: | p1@Slc9a6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc9a6_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000077741, ENSMUST00000114784_5end |
EntrezGene: | 236794 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.88e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.88e-13 | 23 |
neuron | 5.64e-12 | 33 |
neuronal stem cell | 5.64e-12 | 33 |
neuroblast | 5.64e-12 | 33 |
electrically signaling cell | 5.64e-12 | 33 |
electrically responsive cell | 3.06e-10 | 39 |
electrically active cell | 3.06e-10 | 39 |
ectodermal cell | 1.68e-08 | 44 |
neurectodermal cell | 1.68e-08 | 44 |
neural cell | 3.33e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.66e-21 | 73 |
neurectoderm | 5.23e-21 | 64 |
neural plate | 5.23e-21 | 64 |
presumptive neural plate | 5.23e-21 | 64 |
regional part of nervous system | 1.24e-20 | 54 |
nervous system | 2.78e-20 | 75 |
ectoderm-derived structure | 7.54e-20 | 95 |
ectoderm | 7.54e-20 | 95 |
presumptive ectoderm | 7.54e-20 | 95 |
neural tube | 2.64e-19 | 52 |
neural rod | 2.64e-19 | 52 |
future spinal cord | 2.64e-19 | 52 |
neural keel | 2.64e-19 | 52 |
ecto-epithelium | 5.71e-19 | 73 |
gray matter | 2.03e-16 | 34 |
pre-chordal neural plate | 3.09e-16 | 49 |
brain | 6.40e-16 | 47 |
future brain | 6.40e-16 | 47 |
regional part of brain | 1.66e-15 | 46 |
anterior neural tube | 6.44e-15 | 40 |
regional part of forebrain | 2.54e-14 | 39 |
forebrain | 2.54e-14 | 39 |
future forebrain | 2.54e-14 | 39 |
brain grey matter | 4.20e-13 | 29 |
regional part of telencephalon | 4.20e-13 | 29 |
telencephalon | 4.20e-13 | 29 |
structure with developmental contribution from neural crest | 6.28e-12 | 92 |
cerebral cortex | 2.46e-08 | 21 |
cerebral hemisphere | 2.46e-08 | 21 |
pallium | 2.46e-08 | 21 |
regional part of cerebral cortex | 1.72e-07 | 17 |