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|has_quality=
|has_quality=
|id=FF:11453-119A4
|id=FF:11453-119A4
|is_a=EFO:0002091;;FF:0000002;;FF:0000015;;FF:0000210
|is_a=EFO:0002091;;FF:0000015
|is_obsolete=
|name=Bronchial Epithelial Cell, donor4
|name=Bronchial Epithelial Cell, donor4
|namespace=FANTOM5
|namespace=FANTOM5
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|sample_tissue=lung
|sample_tissue=lung
|top_motifs=PPARG:2.51016496887;NR5A1,2:2.47466840946;TP53:2.38509655325;POU2F1..3:2.14712405396;VSX1,2:1.8612811267;TBX4,5:1.68703432619;ZEB1:1.68108265608;SNAI1..3:1.58990274903;NKX2-3_NKX2-5:1.39059873034;ZNF148:1.38111726694;MYOD1:1.19106403608;TBP:1.1775867697;HAND1,2:1.00462749178;IKZF1:0.993720045574;ZNF423:0.975010630055;PAX1,9:0.927019630365;HMX1:0.914078385619;ADNP_IRX_SIX_ZHX:0.900967425156;TFCP2:0.893037459499;XCPE1{core}:0.872466695288;TEAD1:0.785403303583;FOXQ1:0.746927068806;RBPJ:0.693877903939;NANOG:0.683201537444;ARID5B:0.677016004501;STAT5{A,B}:0.675606341898;LEF1_TCF7_TCF7L1,2:0.6592579442;ONECUT1,2:0.635637544563;FOS_FOS{B,L1}_JUN{B,D}:0.631662179641;GLI1..3:0.621382197122;TFAP2{A,C}:0.614757692348;NFIL3:0.613932660619;SP1:0.572612236277;POU3F1..4:0.562020334163;AR:0.559232865313;bHLH_family:0.543106132702;HIF1A:0.534965792076;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.528647494219;ELK1,4_GABP{A,B1}:0.512421752273;BACH2:0.498149792711;REST:0.491729555593;ESR1:0.47213941488;FOXL1:0.457433869968;SOX{8,9,10}:0.451043618235;GFI1:0.430380822944;GTF2A1,2:0.429402963252;EP300:0.422648107757;FOXM1:0.361044356922;TLX1..3_NFIC{dimer}:0.332545337637;LHX3,4:0.318872098934;ZNF143:0.315705946986;FOSL2:0.314080331261;PBX1:0.31085932552;TFAP4:0.29424627313;YY1:0.267812312113;ELF1,2,4:0.244378372586;NKX2-2,8:0.235233295017;E2F1..5:0.233647913985;ZBTB6:0.233594030336;HLF:0.226814168657;MTF1:0.224191632189;ZIC1..3:0.220955577968;EBF1:0.218390773528;GFI1B:0.201249749547;ZNF238:0.197242738401;PAX2:0.178723057953;RXR{A,B,G}:0.170318786875;OCT4_SOX2{dimer}:0.168921803864;SOX17:0.145777700439;NFE2:0.134474878863;NFY{A,B,C}:0.131742729269;LMO2:0.12591668868;HNF4A_NR2F1,2:0.102420843008;TLX2:0.0970228322883;HOX{A5,B5}:0.0951002586735;RXRA_VDR{dimer}:0.0839140556127;GCM1,2:0.0799251775054;GATA6:0.0459128565717;CEBPA,B_DDIT3:0.0440336743595;ESRRA:0.0409552585798;POU1F1:0.0282506404632;GZF1:0.00222988212501;POU6F1:-0.0188424265183;PAX8:-0.0469297401059;NKX3-2:-0.049177206616;FOX{F1,F2,J1}:-0.0540823741088;CRX:-0.0591766730292;NANOG{mouse}:-0.064545267152;NRF1:-0.0683891989532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0689298612245;CDC5L:-0.0733284066209;POU5F1:-0.0772807401568;NFKB1_REL_RELA:-0.084099557285;HES1:-0.10790652777;MYB:-0.137645395837;HSF1,2:-0.177272967895;ETS1,2:-0.195252377689;TFDP1:-0.201790874687;SPZ1:-0.205151551377;HOXA9_MEIS1:-0.20570490752;T:-0.223042982925;JUN:-0.272292425475;FOX{I1,J2}:-0.275229258338;STAT2,4,6:-0.2837913822;PAX5:-0.295544247744;MAZ:-0.314912866688;HNF1A:-0.352104800195;SOX2:-0.382305863136;UFEwm:-0.386685553933;NR1H4:-0.406142484239;NR6A1:-0.428863387011;KLF4:-0.429061618767;CREB1:-0.437750879902;SPI1:-0.450200973408;TFAP2B:-0.451859658197;SPIB:-0.458968500365;HOX{A4,D4}:-0.475566559241;RFX1:-0.486706388303;SMAD1..7,9:-0.488336803149;RREB1:-0.50306517287;EN1,2:-0.510147739956;ATF5_CREB3:-0.549780232658;ZBTB16:-0.568451579998;NHLH1,2:-0.575551443509;AIRE:-0.576375538875;HIC1:-0.601373116362;HOX{A6,A7,B6,B7}:-0.612184671716;ATF4:-0.614126864757;NFE2L2:-0.62641585045;GTF2I:-0.63545220014;RUNX1..3:-0.642527418458;IRF7:-0.656855050163;PAX3,7:-0.661347626946;PDX1:-0.664038274295;MEF2{A,B,C,D}:-0.67099215698;MYBL2:-0.685022659275;NFE2L1:-0.698834871691;PAX6:-0.719345901066;FOXN1:-0.744296010175;PITX1..3:-0.754934256709;TEF:-0.76510416364;AHR_ARNT_ARNT2:-0.766532024606;FOXO1,3,4:-0.771977383076;RFX2..5_RFXANK_RFXAP:-0.776262734304;NR3C1:-0.779563897049;PRRX1,2:-0.782827858004;RORA:-0.794460263499;NFIX:-0.802554808129;ATF2:-0.813895640041;CUX2:-0.819167090548;ZFP161:-0.83549534737;SRF:-0.838257512255;MED-1{core}:-0.88416616126;MAFB:-0.886234685877;TGIF1:-0.936464227235;MYFfamily:-0.991004582093;ALX1:-1.03082119485;CDX1,2,4:-1.0319028677;FOXA2:-1.0377606119;TOPORS:-1.15845913641;BREu{core}:-1.16865021423;NFATC1..3:-1.16977727615;FOXP1:-1.17754061503;STAT1,3:-1.18387028385;DMAP1_NCOR{1,2}_SMARC:-1.20823548582;SOX5:-1.21420509183;ZNF384:-1.21838292342;TAL1_TCF{3,4,12}:-1.21986003243;ALX4:-1.22985502897;PATZ1:-1.26536824786;EVI1:-1.26858537575;IRF1,2:-1.28107376309;HMGA1,2:-1.28843058813;EGR1..3:-1.37176199256;PAX4:-1.41627897054;NKX3-1:-1.43880637504;GATA4:-1.44163583658;PRDM1:-1.45332593106;XBP1:-1.45860567874;NKX2-1,4:-1.46727105348;MZF1:-1.47194119149;SREBF1,2:-1.49241311685;MTE{core}:-1.51407934818;IKZF2:-1.51418060629;FOXP3:-1.52522123221;ATF6:-1.54311771788;FOX{D1,D2}:-1.55458003967;NKX6-1,2:-1.57021295066;DBP:-1.71033568299;HBP1_HMGB_SSRP1_UBTF:-1.74724130726;BPTF:-1.94121199602;FOXD3:-2.01668583146
|top_motifs=PPARG:2.51016496887;NR5A1,2:2.47466840946;TP53:2.38509655325;POU2F1..3:2.14712405396;VSX1,2:1.8612811267;TBX4,5:1.68703432619;ZEB1:1.68108265608;SNAI1..3:1.58990274903;NKX2-3_NKX2-5:1.39059873034;ZNF148:1.38111726694;MYOD1:1.19106403608;TBP:1.1775867697;HAND1,2:1.00462749178;IKZF1:0.993720045574;ZNF423:0.975010630055;PAX1,9:0.927019630365;HMX1:0.914078385619;ADNP_IRX_SIX_ZHX:0.900967425156;TFCP2:0.893037459499;XCPE1{core}:0.872466695288;TEAD1:0.785403303583;FOXQ1:0.746927068806;RBPJ:0.693877903939;NANOG:0.683201537444;ARID5B:0.677016004501;STAT5{A,B}:0.675606341898;LEF1_TCF7_TCF7L1,2:0.6592579442;ONECUT1,2:0.635637544563;FOS_FOS{B,L1}_JUN{B,D}:0.631662179641;GLI1..3:0.621382197122;TFAP2{A,C}:0.614757692348;NFIL3:0.613932660619;SP1:0.572612236277;POU3F1..4:0.562020334163;AR:0.559232865313;bHLH_family:0.543106132702;HIF1A:0.534965792076;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.528647494219;ELK1,4_GABP{A,B1}:0.512421752273;BACH2:0.498149792711;REST:0.491729555593;ESR1:0.47213941488;FOXL1:0.457433869968;SOX{8,9,10}:0.451043618235;GFI1:0.430380822944;GTF2A1,2:0.429402963252;EP300:0.422648107757;FOXM1:0.361044356922;TLX1..3_NFIC{dimer}:0.332545337637;LHX3,4:0.318872098934;ZNF143:0.315705946986;FOSL2:0.314080331261;PBX1:0.31085932552;TFAP4:0.29424627313;YY1:0.267812312113;ELF1,2,4:0.244378372586;NKX2-2,8:0.235233295017;E2F1..5:0.233647913985;ZBTB6:0.233594030336;HLF:0.226814168657;MTF1:0.224191632189;ZIC1..3:0.220955577968;EBF1:0.218390773528;GFI1B:0.201249749547;ZNF238:0.197242738401;PAX2:0.178723057953;RXR{A,B,G}:0.170318786875;OCT4_SOX2{dimer}:0.168921803864;SOX17:0.145777700439;NFE2:0.134474878863;NFY{A,B,C}:0.131742729269;LMO2:0.12591668868;HNF4A_NR2F1,2:0.102420843008;TLX2:0.0970228322883;HOX{A5,B5}:0.0951002586735;RXRA_VDR{dimer}:0.0839140556127;GCM1,2:0.0799251775054;GATA6:0.0459128565717;CEBPA,B_DDIT3:0.0440336743595;ESRRA:0.0409552585798;POU1F1:0.0282506404632;GZF1:0.00222988212501;POU6F1:-0.0188424265183;PAX8:-0.0469297401059;NKX3-2:-0.049177206616;FOX{F1,F2,J1}:-0.0540823741088;CRX:-0.0591766730292;NANOG{mouse}:-0.064545267152;NRF1:-0.0683891989532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0689298612245;CDC5L:-0.0733284066209;POU5F1:-0.0772807401568;NFKB1_REL_RELA:-0.084099557285;HES1:-0.10790652777;MYB:-0.137645395837;HSF1,2:-0.177272967895;ETS1,2:-0.195252377689;TFDP1:-0.201790874687;SPZ1:-0.205151551377;HOXA9_MEIS1:-0.20570490752;T:-0.223042982925;JUN:-0.272292425475;FOX{I1,J2}:-0.275229258338;STAT2,4,6:-0.2837913822;PAX5:-0.295544247744;MAZ:-0.314912866688;HNF1A:-0.352104800195;SOX2:-0.382305863136;UFEwm:-0.386685553933;NR1H4:-0.406142484239;NR6A1:-0.428863387011;KLF4:-0.429061618767;CREB1:-0.437750879902;SPI1:-0.450200973408;TFAP2B:-0.451859658197;SPIB:-0.458968500365;HOX{A4,D4}:-0.475566559241;RFX1:-0.486706388303;SMAD1..7,9:-0.488336803149;RREB1:-0.50306517287;EN1,2:-0.510147739956;ATF5_CREB3:-0.549780232658;ZBTB16:-0.568451579998;NHLH1,2:-0.575551443509;AIRE:-0.576375538875;HIC1:-0.601373116362;HOX{A6,A7,B6,B7}:-0.612184671716;ATF4:-0.614126864757;NFE2L2:-0.62641585045;GTF2I:-0.63545220014;RUNX1..3:-0.642527418458;IRF7:-0.656855050163;PAX3,7:-0.661347626946;PDX1:-0.664038274295;MEF2{A,B,C,D}:-0.67099215698;MYBL2:-0.685022659275;NFE2L1:-0.698834871691;PAX6:-0.719345901066;FOXN1:-0.744296010175;PITX1..3:-0.754934256709;TEF:-0.76510416364;AHR_ARNT_ARNT2:-0.766532024606;FOXO1,3,4:-0.771977383076;RFX2..5_RFXANK_RFXAP:-0.776262734304;NR3C1:-0.779563897049;PRRX1,2:-0.782827858004;RORA:-0.794460263499;NFIX:-0.802554808129;ATF2:-0.813895640041;CUX2:-0.819167090548;ZFP161:-0.83549534737;SRF:-0.838257512255;MED-1{core}:-0.88416616126;MAFB:-0.886234685877;TGIF1:-0.936464227235;MYFfamily:-0.991004582093;ALX1:-1.03082119485;CDX1,2,4:-1.0319028677;FOXA2:-1.0377606119;TOPORS:-1.15845913641;BREu{core}:-1.16865021423;NFATC1..3:-1.16977727615;FOXP1:-1.17754061503;STAT1,3:-1.18387028385;DMAP1_NCOR{1,2}_SMARC:-1.20823548582;SOX5:-1.21420509183;ZNF384:-1.21838292342;TAL1_TCF{3,4,12}:-1.21986003243;ALX4:-1.22985502897;PATZ1:-1.26536824786;EVI1:-1.26858537575;IRF1,2:-1.28107376309;HMGA1,2:-1.28843058813;EGR1..3:-1.37176199256;PAX4:-1.41627897054;NKX3-1:-1.43880637504;GATA4:-1.44163583658;PRDM1:-1.45332593106;XBP1:-1.45860567874;NKX2-1,4:-1.46727105348;MZF1:-1.47194119149;SREBF1,2:-1.49241311685;MTE{core}:-1.51407934818;IKZF2:-1.51418060629;FOXP3:-1.52522123221;ATF6:-1.54311771788;FOX{D1,D2}:-1.55458003967;NKX6-1,2:-1.57021295066;DBP:-1.71033568299;HBP1_HMGB_SSRP1_UBTF:-1.74724130726;BPTF:-1.94121199602;FOXD3:-2.01668583146
|xref=
}}
}}

Revision as of 21:10, 27 June 2012


Name:Bronchial Epithelial Cell, donor4
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuelung
dev stage20 years old adult
sexmale
age20
cell typeepithelial cell of lung, bronchial
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1858
catalog numberCA502-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.158
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.265
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.579
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.331
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.967
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.239
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.196
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus1.07
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.283
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.403
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12054

Jaspar motifP-value
MA0002.20.789
MA0003.10.328
MA0004.10.817
MA0006.10.303
MA0007.10.181
MA0009.10.0448
MA0014.10.46
MA0017.10.0183
MA0018.20.25
MA0019.10.221
MA0024.10.633
MA0025.10.409
MA0027.10.481
MA0028.10.0187
MA0029.10.248
MA0030.10.423
MA0031.10.0113
MA0035.20.111
MA0038.10.241
MA0039.20.00368
MA0040.10.286
MA0041.10.403
MA0042.10.871
MA0043.10.389
MA0046.10.528
MA0047.20.536
MA0048.10.617
MA0050.11.27383e-9
MA0051.17.93155e-4
MA0052.10.971
MA0055.10.0015
MA0057.10.0514
MA0058.10.627
MA0059.10.164
MA0060.10.0129
MA0061.10.592
MA0062.20.00456
MA0065.20.00257
MA0066.10.108
MA0067.10.139
MA0068.10.00388
MA0069.10.529
MA0070.10.886
MA0071.10.936
MA0072.10.912
MA0073.10.531
MA0074.10.934
MA0076.10.107
MA0077.10.577
MA0078.10.682
MA0079.20.712
MA0080.20.121
MA0081.10.597
MA0083.10.391
MA0084.10.0318
MA0087.10.348
MA0088.10.0763
MA0090.10.0251
MA0091.10.951
MA0092.10.451
MA0093.10.747
MA0099.23.98096e-13
MA0100.10.0646
MA0101.10.755
MA0102.20.0296
MA0103.12.13766e-6
MA0104.20.428
MA0105.10.514
MA0106.12.32738e-6
MA0107.10.937
MA0108.20.00513
MA0111.10.901
MA0112.20.0241
MA0113.10.737
MA0114.10.0187
MA0115.10.486
MA0116.10.0787
MA0117.10.957
MA0119.10.398
MA0122.10.89
MA0124.10.89
MA0125.10.218
MA0131.10.627
MA0135.10.0521
MA0136.10.458
MA0137.20.339
MA0138.20.169
MA0139.10.556
MA0140.10.273
MA0141.10.0945
MA0142.10.00695
MA0143.10.837
MA0144.10.98
MA0145.10.0639
MA0146.10.0464
MA0147.10.256
MA0148.10.394
MA0149.10.0332
MA0150.10.223
MA0152.10.225
MA0153.10.0697
MA0154.10.232
MA0155.10.607
MA0156.10.147
MA0157.10.144
MA0159.10.116
MA0160.10.089
MA0162.10.0717
MA0163.10.147
MA0164.10.62
MA0258.10.166
MA0259.10.431



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12054

Novel motifP-value
10.434
100.77
1000.183
1010.00547
1020.28
1030.219
1040.575
1050.163
1060.264
1070.344
1080.837
1091.58616e-4
110.0463
1100.0168
1110.594
1120.63
1130.528
1140.45
1150.333
1160.142
1170.175
1180.688
1190.212
120.303
1200.06
1210.38
1220.0166
1230.56
1240.566
1250.676
1260.437
1270.107
1280.983
1290.114
130.00426
1300.414
1310.253
1320.602
1330.0029
1340.191
1350.769
1360.0956
1370.378
1380.968
1390.718
140.941
1400.91
1410.966
1420.0592
1430.923
1440.123
1450.852
1460.0113
1470.141
1480.618
1490.949
150.635
1500.539
1510.518
1520.111
1530.597
1540.312
1550.402
1560.276
1570.731
1580.316
1590.795
160.153
1600.0854
1610.0894
1620.625
1630.481
1640.467
1650.647
1660.57
1670.719
1680.518
1690.0716
170.112
180.525
190.806
20.126
200.971
210.973
220.157
230.973
240.0398
250.623
260.0721
270.224
280.849
290.223
30.618
300.12
310.644
320.968
330.142
340.772
350.502
360.0794
370.248
380.132
390.604
40.593
400.00154
410.669
420.624
430.666
440.673
450.21
460.391
470.149
480.042
490.955
50.577
500.506
510.808
520.431
530.587
540.893
550.523
560.364
570.369
580.784
590.0539
60.231
600.228
610.489
620.899
630.279
640.166
650.326
660.206
670.965
680.911
690.337
70.203
700.0684
710.1
720.951
730.0402
740.041
750.206
760.719
770.0293
780.0594
790.467
80.141
800.729
810.965
820.774
830.993
840.732
850.899
860.919
870.00712
880.774
890.0607
90.642
900.00702
910.694
920.81
930.831
940.835
950.00644
960.654
970.712
980.205
990.0543



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12054


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)
0000223 (endodermal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000926 (mesoderm)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0000077 (mixed endoderm/mesoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000025 (tube)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0004802 (respiratory tract epithelium)
0005153 (epithelial bud)
0005911 (endo-epithelium)
0004921 (subdivision of digestive tract)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005291 (embryonic tissue)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0003104 (mesenchyme)
0000115 (lung epithelium)
0000464 (anatomical space)
0001048 (primordium)
0000925 (endoderm)
0005181 (thoracic segment organ)
0006598 (presumptive structure)
0004185 (endodermal part of digestive tract)
0005157 (epithelial fold)
0002532 (epiblast (generic))
0007196 (tracheobronchial tree)
0001555 (digestive tract)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0007026 (primitive gut)
0001041 (foregut)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0009142 (entire embryonic mesenchyme)
0008947 (respiratory primordium)
0003258 (endoderm of foregut)
0005597 (lung primordium)
0006595 (presumptive endoderm)
0006603 (presumptive mesoderm)
0000118 (lung bud)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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