FF:10411-106B6: Difference between revisions

Revision as of 14:23, 29 June 2012

Name:	renal cell carcinoma cell line:OS-RC-2
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	male
age	unknown
cell type	unclassifiable
cell line	OS-RC-2
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0347
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.396
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.156
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0287
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.247
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	1.201
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.102
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0632
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.436
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.158
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.217
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0.27
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.369
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.567
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.361
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10729

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.509
MA0003.1	MA0003.1	0.669
MA0004.1	MA0004.1	0.0402
MA0006.1	MA0006.1	0.0232
MA0007.1	MA0007.1	0.431
MA0009.1	MA0009.1	0.926
MA0014.1	MA0014.1	0.151
MA0017.1	MA0017.1	0.0118
MA0018.2	MA0018.2	2.35942e-5
MA0019.1	MA0019.1	0.227
MA0024.1	MA0024.1	0.00124
MA0025.1	MA0025.1	0.253
MA0027.1	MA0027.1	0.452
MA0028.1	MA0028.1	9.47244e-4
MA0029.1	MA0029.1	0.181
MA0030.1	MA0030.1	0.175
MA0031.1	MA0031.1	0.421
MA0035.2	MA0035.2	0.762
MA0038.1	MA0038.1	6.55207e-5
MA0039.2	MA0039.2	8.86766e-4
MA0040.1	MA0040.1	0.951
MA0041.1	MA0041.1	0.2
MA0042.1	MA0042.1	0.727
MA0043.1	MA0043.1	0.0256
MA0046.1	MA0046.1	2.01922e-53
MA0047.2	MA0047.2	0.796
MA0048.1	MA0048.1	0.616
MA0050.1	MA0050.1	0.0102
MA0051.1	MA0051.1	1.7202e-4
MA0052.1	MA0052.1	0.107
MA0055.1	MA0055.1	0.163
MA0057.1	MA0057.1	0.889
MA0058.1	MA0058.1	0.072
MA0059.1	MA0059.1	0.284
MA0060.1	MA0060.1	4.68693e-10
MA0061.1	MA0061.1	0.133
MA0062.2	MA0062.2	0.0158
MA0065.2	MA0065.2	0.562
MA0066.1	MA0066.1	0.574
MA0067.1	MA0067.1	0.00338
MA0068.1	MA0068.1	0.00339
MA0069.1	MA0069.1	0.901
MA0070.1	MA0070.1	0.25
MA0071.1	MA0071.1	0.376
MA0072.1	MA0072.1	0.278
MA0073.1	MA0073.1	0.532
MA0074.1	MA0074.1	0.608
MA0076.1	MA0076.1	0.00648
MA0077.1	MA0077.1	0.598
MA0078.1	MA0078.1	0.16
MA0079.2	MA0079.2	0.122
MA0080.2	MA0080.2	3.60057e-4
MA0081.1	MA0081.1	0.0533
MA0083.1	MA0083.1	0.568
MA0084.1	MA0084.1	0.0635
MA0087.1	MA0087.1	0.622
MA0088.1	MA0088.1	0.0387
MA0090.1	MA0090.1	6.91976e-6
MA0091.1	MA0091.1	0.0319
MA0092.1	MA0092.1	0.992
MA0093.1	MA0093.1	0.0968
MA0099.2	MA0099.2	2.26582e-14
MA0100.1	MA0100.1	0.745
MA0101.1	MA0101.1	0.0869
MA0102.2	MA0102.2	0.272
MA0103.1	MA0103.1	0.101
MA0104.2	MA0104.2	0.191
MA0105.1	MA0105.1	0.834
MA0106.1	MA0106.1	4.88133e-5
MA0107.1	MA0107.1	0.115
MA0108.2	MA0108.2	0.0832
MA0111.1	MA0111.1	0.396
MA0112.2	MA0112.2	0.31
MA0113.1	MA0113.1	0.204
MA0114.1	MA0114.1	0.00605
MA0115.1	MA0115.1	0.529
MA0116.1	MA0116.1	0.405
MA0117.1	MA0117.1	0.58
MA0119.1	MA0119.1	0.0446
MA0122.1	MA0122.1	0.659
MA0124.1	MA0124.1	0.778
MA0125.1	MA0125.1	0.843
MA0131.1	MA0131.1	0.496
MA0135.1	MA0135.1	0.69
MA0136.1	MA0136.1	0.0332
MA0137.2	MA0137.2	0.257
MA0138.2	MA0138.2	0.0335
MA0139.1	MA0139.1	3.39508e-4
MA0140.1	MA0140.1	0.496
MA0141.1	MA0141.1	0.357
MA0142.1	MA0142.1	0.164
MA0143.1	MA0143.1	0.328
MA0144.1	MA0144.1	0.0723
MA0145.1	MA0145.1	0.00909
MA0146.1	MA0146.1	0.399
MA0147.1	MA0147.1	0.126
MA0148.1	MA0148.1	0.109
MA0149.1	MA0149.1	0.981
MA0150.1	MA0150.1	0.0163
MA0152.1	MA0152.1	0.963
MA0153.1	MA0153.1	2.77106e-42
MA0154.1	MA0154.1	0.46
MA0155.1	MA0155.1	0.309
MA0156.1	MA0156.1	0.343
MA0157.1	MA0157.1	0.548
MA0159.1	MA0159.1	0.977
MA0160.1	MA0160.1	0.256
MA0162.1	MA0162.1	0.479
MA0163.1	MA0163.1	0.0153
MA0164.1	MA0164.1	0.891
MA0258.1	MA0258.1	0.993
MA0259.1	MA0259.1	0.203

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10729

Novel motif	Logo	P-value
1	1	0.562
10	10	0.332
100	100	0.659
101	101	0.151
102	102	0.954
103	103	0.588
104	104	0.579
105	105	0.473
106	106	0.225
107	107	0.701
108	108	0.825
109	109	0.3
11	11	0.669
110	110	0.246
111	111	0.314
112	112	0.378
113	113	0.146
114	114	0.301
115	115	0.214
116	116	0.93
117	117	0.302
118	118	0.313
119	119	0.471
12	12	0.975
120	120	0.956
121	121	0.931
122	122	0.204
123	123	0.00201
124	124	0.988
125	125	0.564
126	126	0.161
127	127	0.687
128	128	0.446
129	129	0.0945
13	13	0.0652
130	130	0.183
131	131	0.479
132	132	0.106
133	133	0.409
134	134	0.699
135	135	0.236
136	136	0.108
137	137	0.307
138	138	0.653
139	139	0.103
14	14	0.22
140	140	0.121
141	141	0.923
142	142	0.811
143	143	0.804
144	144	0.972
145	145	0.946
146	146	0.396
147	147	0.58
148	148	0.304
149	149	0.258
15	15	0.477
150	150	0.603
151	151	0.504
152	152	0.962
153	153	0.192
154	154	0.781
155	155	0.491
156	156	0.267
157	157	0.959
158	158	0.477
159	159	0.888
16	16	0.571
160	160	0.383
161	161	0.315
162	162	0.513
163	163	0.0407
164	164	0.0977
165	165	0.689
166	166	0.664
167	167	0.76
168	168	0.788
169	169	0.103
17	17	0.442
18	18	0.143
19	19	0.464
2	2	0.25
20	20	0.435
21	21	0.284
22	22	0.516
23	23	0.558
24	24	0.168
25	25	0.614
26	26	0.42
27	27	0.992
28	28	0.325
29	29	0.868
3	3	0.936
30	30	0.0114
31	31	0.801
32	32	0.00335
33	33	0.711
34	34	0.455
35	35	0.0149
36	36	0.183
37	37	0.837
38	38	0.922
39	39	0.607
4	4	0.275
40	40	0.829
41	41	0.155
42	42	0.801
43	43	0.951
44	44	0.705
45	45	0.124
46	46	0.902
47	47	0.435
48	48	0.775
49	49	0.12
5	5	0.826
50	50	0.736
51	51	0.788
52	52	0.6
53	53	0.671
54	54	0.639
55	55	0.432
56	56	0.172
57	57	0.298
58	58	0.957
59	59	0.489
6	6	0.873
60	60	0.778
61	61	0.782
62	62	0.456
63	63	0.7
64	64	0.912
65	65	0.592
66	66	0.00456
67	67	0.471
68	68	0.743
69	69	0.594
7	7	0.28
70	70	0.653
71	71	0.285
72	72	0.907
73	73	0.472
74	74	0.346
75	75	0.369
76	76	0.558
77	77	0.0557
78	78	0.448
79	79	0.0338
8	8	0.865
80	80	0.362
81	81	0.318
82	82	0.8
83	83	0.331
84	84	0.252
85	85	0.108
86	86	0.607
87	87	0.226
88	88	0.278
89	89	0.58
9	9	0.535
90	90	0.389
91	91	0.731
92	92	0.847
93	93	0.553
94	94	0.374
95	95	0.13
96	96	0.254
97	97	0.548
98	98	0.512
99	99	0.497

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10729

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102403 OS-RC-2 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000926 (mesoderm)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005291 (embryonic tissue)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0003104 (mesenchyme)
0005172 (abdomen element)
0003918 (kidney mesenchyme)
0006598 (presumptive structure)
0005173 (abdominal segment element)
0002532 (epiblast (generic))
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
0009142 (entire embryonic mesenchyme)
0006603 (presumptive mesoderm)
0005095 (kidney rudiment)
0007687 (kidney field)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 6: / Line 6: @@
 |created_by=
 |creation_date=
+|datafreeze_phase=1
 |def=
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5055,-!p1@BOLA3!0.17!59.81!BOLA3;;chr8:103667935..103667960,-!p1@KLF10!0.17!59.38!KLF10;;chr10:63661437..63661465,+!p2@ARID5B!0.17!25.26!ARID5B;;chr3:169491171..169491205,+!p1@MYNN!0.17!22.89!MYNN;;chr10:63809106..63809127,+!p1@ARID5B!0.17!17.49!ARID5B;;chr16:75182376..75182458,+!p1@ZFP1!0.17!13.39!ZFP1;;chr3:141747459..141747475,-!p1@TFDP2!0.17!10.36!TFDP2;;chr19:37157713..37157760,-!p1@ZNF461!0.17!6.91!ZNF461;;chr5:56247935..56247959,-!p1@MIER3!0.17!6.48!MIER3;;chr10:31320777..31320834,-!p1@ZNF438!0.17!6.05!ZNF438;;chr12:57400261..57400344,-!p1@ZBTB39!0.17!5.61!ZBTB39;;chr10:77161533..77161546,-!p2@ZNF503!0.17!4.53!ZNF503;;chr1:149871114..149871134,+!p3@BOLA1!0.17!4.53!BOLA1;;chr18:45456800..45456886,-!p4@SMAD2!0.17!4.32!SMAD2;;chr19:12721616..12721640,-!p2@ZNF490!0.17!3.89!ZNF490;;chr1:40997285..40997352,+!p1@ZNF684!0.17!3.89!ZNF684;;chr17:4890695..4890773,-!p2@CAMTA2!0.17!3.45!CAMTA2;;chr12:72057747..72057854,+!p4@THAP2!0.17!2.81!THAP2;;chr6:45389791..45389832,+!p3@RUNX2!0.17!2.59!RUNX2;;chr16:3185125..3185173,+!p1@ZNF213!0.17!2.59!ZNF213;;chr10:38146994..38147039,-!p2@ZNF248!0.17!2.38!ZNF248;;chr5:132299008..132299026,-!p5@AFF4!0.17!2.16!AFF4;;chr5:76383133..76383186,-!p2@ZBED3!0.17!1.94!ZBED3;;chr3:150126904..150126958,+!p7@TSC22D2!0.17!1.51!TSC22D2;;chr17:47439354..47439383,-!p3@ZNF652!0.17!1.30!ZNF652;;chr15:96875041..96875052,+!p17@NR2F2!0.17!1.08!NR2F2;;chr4:146436110..146436135,+!p6@SMAD1!0.17!1.08!SMAD1;;chr5:142782823..142782854,-!p3@NR3C1!0.17!1.08!NR3C1;;chr8:72756213..72756243,-!p5@MSC!0.17!0.86!MSC;;chr16:4366005..4366016,+!p@chr16:4366005..4366016,+!0.17!0.86!GLIS2;;chr19:49139477..49139552,-!p4@DBP!0.17!0.86!DBP;;chr1:41157641..41157665,+!p7@NFYC!0.17!0.86!NFYC;;chr20:50179368..50179392,-!p2@NFATC2!0.17!0.86!NFATC2;;chr13:46543346..46543367,-!p9@ZC3H13!0.17!0.86!ZC3H13;;chr12:27485733..27485742,+!p5@ARNTL2!0.17!0.65!ARNTL2;;chr14:74206010..74206013,-!p13@C14orf43!0.17!0.65!C14orf43;;chr19:12551849..12551868,-!p4@ZNF443!0.17!0.65!ZNF443;;chr9:99180597..99180614,-!p3@ZNF367!0.17!0.65!ZNF367;;chr5:43121586..43121601,+!p10@ZNF131!0.17!0.65!ZNF131;;chr7:1577111..1577132,+!p4@MAFK!0.17!0.65!MAFK;;chr7:77428248..77428259,+!p5@PHTF2!0.17!0.65!PHTF2;;chr1:23696348..23696363,-!p4@ZNF436!0.17!0.65!ZNF436;;chr1:61548118..61548129,+!p9@NFIA!0.17!0.65!NFIA;;chr1:149858461..149858479,+!p1@BOLA1!0.16!513.69!BOLA1;;chr20:46130619..46130664,+!p1@NCOA3!0.16!35.20!NCOA3;;chr1:40627038..40627071,+!p1@RLF!0.16!16.41!RLF;;chr19:9695195..9695221,-!p2@ZNF121!0.16!14.25!ZNF121;;chr14:62162258..62162269,+!p2@HIF1A!0.16!11.88!HIF1A;;chr21:44394645..44394737,+!p1@PKNOX1!0.16!10.15!PKNOX1;;chr19:56110859..56110917,-!p1@FIZ1!0.16!7.77!FIZ1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.16!6.69!ZNF10;;chr9:14314131..14314147,-!p2@NFIB!0.16!6.48!NFIB;;chr7:99070499..99070523,+!p1@ZNF789!0.16!6.26!ZNF789;;chr15:57025759..57025811,-!p2@ZNF280D!0.16!6.05!ZNF280D;;chr10:97889784..97889827,+!p1@ZNF518A!0.16!5.61!ZNF518A;;chr19:57752022..57752108,+!p1@ZNF805!0.16!4.97!ZNF805;;chr10:35415978..35416050,+!p5@CREM!0.16!4.75!CREM;;chr1:117602932..117602973,+!p1@TTF2!0.16!4.10!TTF2;;chr3:169490562..169490605,+!p2@MYNN!0.16!3.45!MYNN;;chr9:20622444..20622468,-!p2@MLLT3!0.16!3.45!MLLT3;;chr19:44598534..44598559,+!p2@ZNF224!0.16!3.24!ZNF224;;chrX:106959661..106959763,-!p4@TSC22D3!0.16!3.02!TSC22D3;;chr2:148778973..148779035,+!p3@MBD5!0.16!2.59!MBD5;;chr15:67357992..67358009,+!p3@SMAD3!0.16!2.38!SMAD3;;chr1:151032833..151032850,+!p3@MLLT11!0.16!2.16!MLLT11;;chr1:211432887..211432903,+!p4@RCOR3!0.16!2.16!RCOR3;;chr19:12405689..12405707,-!p3@ZNF44!0.16!1.73!ZNF44;;chr1:221052776..221052799,+!p1@HLX!0.16!1.51!HLX;;chr5:142783792..142783842,-!p5@NR3C1!0.16!1.51!NR3C1;;chr9:14314106..14314119,-!p5@NFIB!0.16!1.51!NFIB;;chr3:107244229..107244254,+!p3@BBX!0.16!1.30!BBX;;chr3:150126101..150126118,+!p6@TSC22D2!0.16!1.30!TSC22D2;;

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FF:10411-106B6: Difference between revisions

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Revision as of 14:23, 29 June 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0