FFCP PHASE1:Mm9::chr19:4712071..4712111,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20743|HGNC=|MCL_coexpression_id=367|UniProt=|association_with_transcript=-296bp_to_uc008gao.1_5end|description=CAGE_peak_3_at_Spnb3_5end|id=chr19:4712071..4712111,+|ontology_enrichment_celltype=CL:0000117!9.34e-18!23;CL:0000337!9.34e-18!23;CL:0000540!1.39e-16!33;CL:0000047!1.39e-16!33;CL:0000031!1.39e-16!33;CL:0000404!1.39e-16!33;CL:0000393!8.84e-12!39;CL:0000211!8.84e-12!39;CL:0000221!2.28e-11!44;CL:0000133!2.28e-11!44;CL:0002319!3.32e-11!43;CL:0000055!9.50e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.74e-28,23;CL:0000337,5.74e-28,23;CL:0000540,5.36e-17,33;CL:0000047,5.36e-17,33;CL:0000031,5.36e-17,33;CL:0000404,5.36e-17,33;CL:0000393,3.51e-13,39;CL:0000211,3.51e-13,39;CL:0002319,2.97e-11,43;CL:0000221,7.86e-11,44;CL:0000133,7.86e-11,44;CL:0002609,4.60e-09,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!4.30e-29!102;UBERON:0000924!4.30e-29!102;UBERON:0006601!4.30e-29!102;UBERON:0002346!1.73e-28!71;UBERON:0003075!1.73e-28!71;UBERON:0007284!1.73e-28!71;UBERON:0001017!1.92e-27!73;UBERON:0005743!1.92e-27!73;UBERON:0000073!2.41e-27!75;UBERON:0001016!2.41e-27!75;UBERON:0000033!6.96e-27!63;UBERON:0003056!1.53e-24!49;UBERON:0001049!2.60e-24!52;UBERON:0005068!2.60e-24!52;UBERON:0006241!2.60e-24!52;UBERON:0007135!2.60e-24!52;UBERON:0000955!8.51e-23!50;UBERON:0006238!8.51e-23!50;UBERON:0002616!2.65e-22!49;UBERON:0003080!7.00e-19!40;UBERON:0002020!2.06e-18!34;UBERON:0002780!3.67e-18!39;UBERON:0001890!3.67e-18!39;UBERON:0006240!3.67e-18!39;UBERON:0002791!4.78e-15!29;UBERON:0003528!4.78e-15!29;UBERON:0001893!4.78e-15!29;UBERON:0007811!7.15e-14!86;UBERON:0000153!3.29e-12!94;UBERON:0000956!4.85e-10!21;UBERON:0001869!4.85e-10!21;UBERON:0000203!4.85e-10!21;UBERON:0002619!2.37e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.33e-39,64;UBERON:0003075,1.33e-39,64;UBERON:0007284,1.33e-39,64;UBERON:0000073,9.74e-37,54;UBERON:0001049,3.05e-34,52;UBERON:0005068,3.05e-34,52;UBERON:0006241,3.05e-34,52;UBERON:0007135,3.05e-34,52;UBERON:0010371,9.92e-33,73;UBERON:0003056,3.66e-32,49;UBERON:0004121,1.25e-31,95;UBERON:0000924,1.25e-31,95;UBERON:0006601,1.25e-31,95;UBERON:0001017,1.93e-31,73;UBERON:0001016,3.50e-30,75;UBERON:0002020,1.69e-28,34;UBERON:0000955,2.40e-28,47;UBERON:0006238,2.40e-28,47;UBERON:0002616,1.42e-27,46;UBERON:0003080,1.30e-24,40;UBERON:0002780,1.70e-23,39;UBERON:0001890,1.70e-23,39;UBERON:0006240,1.70e-23,39;UBERON:0003528,5.11e-23,29;UBERON:0002791,5.11e-23,29;UBERON:0001893,5.11e-23,29;UBERON:0010314,1.07e-22,92;UBERON:0000956,6.82e-15,21;UBERON:0001869,6.82e-15,21;UBERON:0000203,6.82e-15,21;UBERON:0002619,1.46e-10,17;UBERON:0003076,8.24e-10,12;UBERON:0003057,8.24e-10,12;UBERON:0002420,1.90e-09,8;UBERON:0007245,1.90e-09,8;UBERON:0010009,1.90e-09,8;UBERON:0010011,1.90e-09,8;UBERON:0000454,1.90e-09,8;UBERON:0000025,1.44e-08,114;UBERON:0000970,3.95e-08,9;UBERON:0000019,3.95e-08,9;UBERON:0000047,3.95e-08,9;UBERON:0010312,3.95e-08,9;UBERON:0004088,3.95e-08,9;UBERON:0002104,3.95e-08,9;UBERON:0001456,3.95e-08,9;UBERON:0003072,3.95e-08,9;UBERON:0004128,3.95e-08,9;UBERON:0003071,3.95e-08,9;UBERON:0002240,1.05e-07,6;UBERON:0005174,1.05e-07,6;UBERON:0001137,1.05e-07,6;UBERON:0004111,2.93e-07,122;UBERON:0002021,3.66e-07,10;UBERON:0000411,3.66e-07,10;UBERON:0001950,3.66e-07,10|phase1_expression=0.160148847104794,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.7806839470486,5.81890077199236,6.97214543856797,0,0,0,0,0,0,0.384218305321555,13.2722703754851,14.1756235248275,11.7781978356774,4.85606673486466,3.53389665522582,9.67677313798137,8.33855597858656,17.4651569455904,8.8092704799511,5.49055553766307,5.68344173048101,12.6610836220986,9.33173964744578,12.5019208933622,5.30447698102624,2.8138130501584,4.5839474333043,5.00868595305235,5.41012387036591,13.6071595452469,0.075726193333184,0.226714680320357,0,0,0,0.539703191637817,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0.253359865475099,0,0.34255163915718,0,0,0,0.304465478312141,0.230615497256059,0.452167921657868,0.352766121407114,0.251333182659351,0,0,0,0,0,0,0,31.034764483224,30.1603257811375,0,0,0,0,5.99162557619291,2.28750301409313,2.76439574648302,2.9550134432687,3.58001640262463,3.1168206683934,3.24482526135515,0.101839363850316,0.124406970610093,0,0.631325567659422,3.25301107406759,3.90833577536904,6.30217454318722,6.78171680260718,7.00775941258677,5.12454881139399,4.77878795254617,2.32833033665114,0.215567992932842,0.189106080167819,0.527853372491847,0,0,0,0,1.19420560091096,0,0,0,0,0.234526059981096,0.180062061461015,0,0.393528463494808,0.154267112887378,0,0,0,0.16455984991348,0.164167464079095,0,0,0,0,2.3131894342054,7.71784592844633,0,0,0.639864751605702,0.696710015581316,0.257734922644187,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0.228497025219458,0,0,0,0,0,0.442830443938806,0.156998727841375,0.616985819609003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18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| ||
|EntrezGene=20743 | |||
|HGNC= | |||
|MCL_coexpression_id=367 | |||
|UniProt= | |||
|association_with_transcript=-296bp_to_uc008gao.1_5end | |||
|description=CAGE_peak_3_at_Spnb3_5end | |||
|id=chr19:4712071..4712111,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.34e-18!23;CL:0000337!9.34e-18!23;CL:0000540!1.39e-16!33;CL:0000047!1.39e-16!33;CL:0000031!1.39e-16!33;CL:0000404!1.39e-16!33;CL:0000393!8.84e-12!39;CL:0000211!8.84e-12!39;CL:0000221!2.28e-11!44;CL:0000133!2.28e-11!44;CL:0002319!3.32e-11!43;CL:0000055!9.50e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.74e-28,23;CL:0000337,5.74e-28,23;CL:0000540,5.36e-17,33;CL:0000047,5.36e-17,33;CL:0000031,5.36e-17,33;CL:0000404,5.36e-17,33;CL:0000393,3.51e-13,39;CL:0000211,3.51e-13,39;CL:0002319,2.97e-11,43;CL:0000221,7.86e-11,44;CL:0000133,7.86e-11,44;CL:0002609,4.60e-09,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.30e-29!102;UBERON:0000924!4.30e-29!102;UBERON:0006601!4.30e-29!102;UBERON:0002346!1.73e-28!71;UBERON:0003075!1.73e-28!71;UBERON:0007284!1.73e-28!71;UBERON:0001017!1.92e-27!73;UBERON:0005743!1.92e-27!73;UBERON:0000073!2.41e-27!75;UBERON:0001016!2.41e-27!75;UBERON:0000033!6.96e-27!63;UBERON:0003056!1.53e-24!49;UBERON:0001049!2.60e-24!52;UBERON:0005068!2.60e-24!52;UBERON:0006241!2.60e-24!52;UBERON:0007135!2.60e-24!52;UBERON:0000955!8.51e-23!50;UBERON:0006238!8.51e-23!50;UBERON:0002616!2.65e-22!49;UBERON:0003080!7.00e-19!40;UBERON:0002020!2.06e-18!34;UBERON:0002780!3.67e-18!39;UBERON:0001890!3.67e-18!39;UBERON:0006240!3.67e-18!39;UBERON:0002791!4.78e-15!29;UBERON:0003528!4.78e-15!29;UBERON:0001893!4.78e-15!29;UBERON:0007811!7.15e-14!86;UBERON:0000153!3.29e-12!94;UBERON:0000956!4.85e-10!21;UBERON:0001869!4.85e-10!21;UBERON:0000203!4.85e-10!21;UBERON:0002619!2.37e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.33e-39,64;UBERON:0003075,1.33e-39,64;UBERON:0007284,1.33e-39,64;UBERON:0000073,9.74e-37,54;UBERON:0001049,3.05e-34,52;UBERON:0005068,3.05e-34,52;UBERON:0006241,3.05e-34,52;UBERON:0007135,3.05e-34,52;UBERON:0010371,9.92e-33,73;UBERON:0003056,3.66e-32,49;UBERON:0004121,1.25e-31,95;UBERON:0000924,1.25e-31,95;UBERON:0006601,1.25e-31,95;UBERON:0001017,1.93e-31,73;UBERON:0001016,3.50e-30,75;UBERON:0002020,1.69e-28,34;UBERON:0000955,2.40e-28,47;UBERON:0006238,2.40e-28,47;UBERON:0002616,1.42e-27,46;UBERON:0003080,1.30e-24,40;UBERON:0002780,1.70e-23,39;UBERON:0001890,1.70e-23,39;UBERON:0006240,1.70e-23,39;UBERON:0003528,5.11e-23,29;UBERON:0002791,5.11e-23,29;UBERON:0001893,5.11e-23,29;UBERON:0010314,1.07e-22,92;UBERON:0000956,6.82e-15,21;UBERON:0001869,6.82e-15,21;UBERON:0000203,6.82e-15,21;UBERON:0002619,1.46e-10,17;UBERON:0003076,8.24e-10,12;UBERON:0003057,8.24e-10,12;UBERON:0002420,1.90e-09,8;UBERON:0007245,1.90e-09,8;UBERON:0010009,1.90e-09,8;UBERON:0010011,1.90e-09,8;UBERON:0000454,1.90e-09,8;UBERON:0000025,1.44e-08,114;UBERON:0000970,3.95e-08,9;UBERON:0000019,3.95e-08,9;UBERON:0000047,3.95e-08,9;UBERON:0010312,3.95e-08,9;UBERON:0004088,3.95e-08,9;UBERON:0002104,3.95e-08,9;UBERON:0001456,3.95e-08,9;UBERON:0003072,3.95e-08,9;UBERON:0004128,3.95e-08,9;UBERON:0003071,3.95e-08,9;UBERON:0002240,1.05e-07,6;UBERON:0005174,1.05e-07,6;UBERON:0001137,1.05e-07,6;UBERON:0004111,2.93e-07,122;UBERON:0002021,3.66e-07,10;UBERON:0000411,3.66e-07,10;UBERON:0001950,3.66e-07,10 | |||
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|short_description=p3@Spnb3 | |||
}} |
Revision as of 17:55, 13 September 2013
Short description: | p3@Spnb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Spnb3_5end |
Coexpression cluster: | MCL_coexpression_mm9:367 |
Association with transcript: | -296bp_to_uc008gao.1_5end |
EntrezGene: | Spnb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.74e-28 | 23 |
neuroblast (sensu Vertebrata) | 5.74e-28 | 23 |
neuron | 5.36e-17 | 33 |
neuronal stem cell | 5.36e-17 | 33 |
neuroblast | 5.36e-17 | 33 |
electrically signaling cell | 5.36e-17 | 33 |
electrically responsive cell | 3.51e-13 | 39 |
electrically active cell | 3.51e-13 | 39 |
neural cell | 2.97e-11 | 43 |
ectodermal cell | 7.86e-11 | 44 |
neurectodermal cell | 7.86e-11 | 44 |
neuron of cerebral cortex | 4.60e-09 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.