FFCP PHASE1:Mm9::chr19:6498024..6498037,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=18190|HGNC=|MCL_coexpression_id=168|UniProt=E9PUN1,Q3TQ54|association_with_transcript=189bp_to_ENSMUST00000113459,uc008giy.1_5end|description=CAGE_peak_7_at_Nrxn2_5end|id=chr19:6498024..6498037,+|ontology_enrichment_celltype=CL:0000117!5.72e-14!23;CL:0000337!5.72e-14!23;CL:0000221!1.48e-10!44;CL:0000133!1.48e-10!44;CL:0002319!1.92e-10!43;CL:0000540!7.89e-09!33;CL:0000047!7.89e-09!33;CL:0000031!7.89e-09!33;CL:0000404!7.89e-09!33;CL:0000055!1.96e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.84e-20,23;CL:0000337,1.84e-20,23;CL:0000540,4.20e-13,33;CL:0000047,4.20e-13,33;CL:0000031,4.20e-13,33;CL:0000404,4.20e-13,33;CL:0002319,4.83e-12,43;CL:0000221,1.13e-11,44;CL:0000133,1.13e-11,44;CL:0000393,1.63e-10,39;CL:0000211,1.63e-10,39;CL:0002610,1.42e-07,3;CL:0002613,3.50e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.83e-32!73;UBERON:0005743!2.83e-32!73;UBERON:0001049!8.95e-32!52;UBERON:0005068!8.95e-32!52;UBERON:0006241!8.95e-32!52;UBERON:0007135!8.95e-32!52;UBERON:0000073!1.65e-31!75;UBERON:0001016!1.65e-31!75;UBERON:0000033!8.42e-31!63;UBERON:0000955!1.77e-30!50;UBERON:0006238!1.77e-30!50;UBERON:0002616!1.49e-29!49;UBERON:0002346!4.50e-28!71;UBERON:0003075!4.50e-28!71;UBERON:0007284!4.50e-28!71;UBERON:0004121!3.41e-27!102;UBERON:0000924!3.41e-27!102;UBERON:0006601!3.41e-27!102;UBERON:0003056!3.79e-23!49;UBERON:0003080!6.65e-23!40;UBERON:0002780!4.06e-22!39;UBERON:0001890!4.06e-22!39;UBERON:0006240!4.06e-22!39;UBERON:0002020!4.97e-22!34;UBERON:0002791!3.58e-18!29;UBERON:0003528!3.58e-18!29;UBERON:0001893!3.58e-18!29;UBERON:0007811!1.64e-17!86;UBERON:0000153!1.26e-15!94;UBERON:0000956!1.93e-12!21;UBERON:0001869!1.93e-12!21;UBERON:0000203!1.93e-12!21;UBERON:0002619!7.99e-11!17;UBERON:0002021!5.33e-10!10;UBERON:0000411!5.33e-10!10;UBERON:0001950!5.33e-10!10;UBERON:0003076!3.66e-09!12;UBERON:0003057!3.66e-09!12;UBERON:0000025!3.51e-07!114;UBERON:0002420!5.22e-07!8;UBERON:0007245!5.22e-07!8;UBERON:0010009!5.22e-07!8;UBERON:0010011!5.22e-07!8;UBERON:0000454!5.22e-07!8;UBERON:0004111!8.40e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.05e-39,73;UBERON:0001016,3.80e-38,75;UBERON:0000073,2.27e-36,54;UBERON:0002020,6.03e-33,34;UBERON:0001049,1.77e-32,52;UBERON:0005068,1.77e-32,52;UBERON:0006241,1.77e-32,52;UBERON:0007135,1.77e-32,52;UBERON:0004121,9.08e-32,95;UBERON:0000924,9.08e-32,95;UBERON:0006601,9.08e-32,95;UBERON:0002346,1.01e-28,64;UBERON:0003075,1.01e-28,64;UBERON:0007284,1.01e-28,64;UBERON:0000955,9.25e-27,47;UBERON:0006238,9.25e-27,47;UBERON:0003528,1.16e-26,29;UBERON:0002791,1.16e-26,29;UBERON:0001893,1.16e-26,29;UBERON:0002616,4.84e-25,46;UBERON:0010371,2.92e-24,73;UBERON:0002021,3.57e-23,10;UBERON:0000411,3.57e-23,10;UBERON:0001950,3.57e-23,10;UBERON:0003080,3.88e-22,40;UBERON:0002780,1.29e-20,39;UBERON:0001890,1.29e-20,39;UBERON:0006240,1.29e-20,39;UBERON:0003056,1.89e-20,49;UBERON:0010314,1.04e-17,92;UBERON:0002420,1.60e-15,8;UBERON:0007245,1.60e-15,8;UBERON:0010009,1.60e-15,8;UBERON:0010011,1.60e-15,8;UBERON:0000454,1.60e-15,8;UBERON:0002619,4.34e-15,17;UBERON:0000956,7.06e-14,21;UBERON:0001869,7.06e-14,21;UBERON:0000203,7.06e-14,21;UBERON:0000025,6.22e-11,114;UBERON:0003076,9.54e-11,12;UBERON:0003057,9.54e-11,12;UBERON:0000369,1.24e-10,5;UBERON:0002435,1.24e-10,5;UBERON:0000204,1.24e-10,5;UBERON:0010082,1.24e-10,5;UBERON:0004111,9.35e-10,122;UBERON:0011216,1.24e-09,194;UBERON:0002240,6.15e-09,6;UBERON:0005174,6.15e-09,6;UBERON:0001137,6.15e-09,6;UBERON:0002950,2.68e-08,4;UBERON:0001891,2.68e-08,4;UBERON:0009616,2.68e-08,4;UBERON:0010286,2.68e-08,4;UBERON:0004684,1.42e-07,3;UBERON:0002275,1.42e-07,3;UBERON:0001948,2.13e-07,5;UBERON:0002315,2.13e-07,5|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0.219686182734472,0.58328969722285,0.139986421625363,0,0,0,0,0,0,0,2.02316460859598,1.5869729378161,2.53532561402472,0,0,0,0,0,1.79760066311043,2.68952813725088,0.414758449233911,0.810035629990144,0.210324961351382,2.28520787523043,3.09215957332259,0.244981598429908,0.575072826109418,0,6.60695285996332,1.78762273319263,3.84016333140609,3.03338461779446,1.9212405156506,2.6045668527838,1.11673199600552,1.68828783009504,2.29197371665215,2.94628585473668,2.70506193518296,0.931997229126503,0.075726193333184,0,0.579728977403356,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0,0,0.304465478312141,0,0.150722640552623,0.23517741427141,0,0,0,0,0,0,0,0,4.09893115816166,10.8912287542997,0,0,0,0,2.39665023047716,2.74500361691176,1.13088916901578,1.91206752211504,1.79000820131231,2.28566849015516,0.811206315338788,0.101839363850316,0,0,0,0,0,0.360124259610698,0.753524089178575,0.408218994907967,0.512454881139399,1.03071897015702,1.03481348295606,0,0,0,0,0.556094498451196,0,0,0.199034266818493,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0.164167464079095,0,0.146199987425332,0,0,1.68231958851302,0.617427674275707,0,0,0,0,0.128867461322093,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0.228497025219458,0,0,0.193952487167626,0.140271639780637,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,1.76605648986571,0.820481806145422,0,0,0.315508219416257,0,0,0,0,0,0,0,0,3.85585579706168,0,0.534196811001766,0,0.164970122972535,0,0.485561272309963,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0.36012218806262,0.646793418913773,0.214337035031592,0.354680467284547,0.356737635204141,0.493647061806363,0.304464949114599,0,0,0,0,0,0.0603129249281559,0.119372344003136,0,0.291480836629851,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.216010681643603,0,0,0,0.0826534557253359,0,0,0,0,0.299033092087958,0.165458490457098,0.194451188344048,0.258319646955462,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0.0974578807397524,0,0,0.226730383615211,0,0,0,0,0,0,0,0,4.51801474093653,5.52390283808612,5.15605962095457,4.29632955859219,2.74033007908257,3.0215755895588,6.07520250208625,5.85417564191487,4.07828168085784,4.14208249401456,0.103787347584177,0.798049746802062,0.341467211508268,0,0.209613162627982,0.551530525350042,0.44449345560323,0.412070114477788,0.64183841918363,0.505394423527595,0.50695859978048,0.565879024158229,0.37456602987953,0.704276676453562,0.34461281373368,0.476293691283074,0.579421629724277,0.578727661391115,0.412085900803307,0.588795680537589,0,0.532427418478012,0.715308569841963,0.145346416632329,0.282328141245992,0.423073039458382,0.73171189149109,0,0.135804113845862,0.561142271657738,0.237270036248348,0.788035859004508,0,0.464810523557898,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0.382576664137687,0,0|short_description=p7@Nrxn2}} | ||
|EntrezGene=18190 | |||
|HGNC= | |||
|MCL_coexpression_id=168 | |||
|UniProt=E9PUN1,Q3TQ54 | |||
|association_with_transcript=189bp_to_ENSMUST00000113459,uc008giy.1_5end | |||
|description=CAGE_peak_7_at_Nrxn2_5end | |||
|id=chr19:6498024..6498037,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.72e-14!23;CL:0000337!5.72e-14!23;CL:0000221!1.48e-10!44;CL:0000133!1.48e-10!44;CL:0002319!1.92e-10!43;CL:0000540!7.89e-09!33;CL:0000047!7.89e-09!33;CL:0000031!7.89e-09!33;CL:0000404!7.89e-09!33;CL:0000055!1.96e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.84e-20,23;CL:0000337,1.84e-20,23;CL:0000540,4.20e-13,33;CL:0000047,4.20e-13,33;CL:0000031,4.20e-13,33;CL:0000404,4.20e-13,33;CL:0002319,4.83e-12,43;CL:0000221,1.13e-11,44;CL:0000133,1.13e-11,44;CL:0000393,1.63e-10,39;CL:0000211,1.63e-10,39;CL:0002610,1.42e-07,3;CL:0002613,3.50e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.83e-32!73;UBERON:0005743!2.83e-32!73;UBERON:0001049!8.95e-32!52;UBERON:0005068!8.95e-32!52;UBERON:0006241!8.95e-32!52;UBERON:0007135!8.95e-32!52;UBERON:0000073!1.65e-31!75;UBERON:0001016!1.65e-31!75;UBERON:0000033!8.42e-31!63;UBERON:0000955!1.77e-30!50;UBERON:0006238!1.77e-30!50;UBERON:0002616!1.49e-29!49;UBERON:0002346!4.50e-28!71;UBERON:0003075!4.50e-28!71;UBERON:0007284!4.50e-28!71;UBERON:0004121!3.41e-27!102;UBERON:0000924!3.41e-27!102;UBERON:0006601!3.41e-27!102;UBERON:0003056!3.79e-23!49;UBERON:0003080!6.65e-23!40;UBERON:0002780!4.06e-22!39;UBERON:0001890!4.06e-22!39;UBERON:0006240!4.06e-22!39;UBERON:0002020!4.97e-22!34;UBERON:0002791!3.58e-18!29;UBERON:0003528!3.58e-18!29;UBERON:0001893!3.58e-18!29;UBERON:0007811!1.64e-17!86;UBERON:0000153!1.26e-15!94;UBERON:0000956!1.93e-12!21;UBERON:0001869!1.93e-12!21;UBERON:0000203!1.93e-12!21;UBERON:0002619!7.99e-11!17;UBERON:0002021!5.33e-10!10;UBERON:0000411!5.33e-10!10;UBERON:0001950!5.33e-10!10;UBERON:0003076!3.66e-09!12;UBERON:0003057!3.66e-09!12;UBERON:0000025!3.51e-07!114;UBERON:0002420!5.22e-07!8;UBERON:0007245!5.22e-07!8;UBERON:0010009!5.22e-07!8;UBERON:0010011!5.22e-07!8;UBERON:0000454!5.22e-07!8;UBERON:0004111!8.40e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.05e-39,73;UBERON:0001016,3.80e-38,75;UBERON:0000073,2.27e-36,54;UBERON:0002020,6.03e-33,34;UBERON:0001049,1.77e-32,52;UBERON:0005068,1.77e-32,52;UBERON:0006241,1.77e-32,52;UBERON:0007135,1.77e-32,52;UBERON:0004121,9.08e-32,95;UBERON:0000924,9.08e-32,95;UBERON:0006601,9.08e-32,95;UBERON:0002346,1.01e-28,64;UBERON:0003075,1.01e-28,64;UBERON:0007284,1.01e-28,64;UBERON:0000955,9.25e-27,47;UBERON:0006238,9.25e-27,47;UBERON:0003528,1.16e-26,29;UBERON:0002791,1.16e-26,29;UBERON:0001893,1.16e-26,29;UBERON:0002616,4.84e-25,46;UBERON:0010371,2.92e-24,73;UBERON:0002021,3.57e-23,10;UBERON:0000411,3.57e-23,10;UBERON:0001950,3.57e-23,10;UBERON:0003080,3.88e-22,40;UBERON:0002780,1.29e-20,39;UBERON:0001890,1.29e-20,39;UBERON:0006240,1.29e-20,39;UBERON:0003056,1.89e-20,49;UBERON:0010314,1.04e-17,92;UBERON:0002420,1.60e-15,8;UBERON:0007245,1.60e-15,8;UBERON:0010009,1.60e-15,8;UBERON:0010011,1.60e-15,8;UBERON:0000454,1.60e-15,8;UBERON:0002619,4.34e-15,17;UBERON:0000956,7.06e-14,21;UBERON:0001869,7.06e-14,21;UBERON:0000203,7.06e-14,21;UBERON:0000025,6.22e-11,114;UBERON:0003076,9.54e-11,12;UBERON:0003057,9.54e-11,12;UBERON:0000369,1.24e-10,5;UBERON:0002435,1.24e-10,5;UBERON:0000204,1.24e-10,5;UBERON:0010082,1.24e-10,5;UBERON:0004111,9.35e-10,122;UBERON:0011216,1.24e-09,194;UBERON:0002240,6.15e-09,6;UBERON:0005174,6.15e-09,6;UBERON:0001137,6.15e-09,6;UBERON:0002950,2.68e-08,4;UBERON:0001891,2.68e-08,4;UBERON:0009616,2.68e-08,4;UBERON:0010286,2.68e-08,4;UBERON:0004684,1.42e-07,3;UBERON:0002275,1.42e-07,3;UBERON:0001948,2.13e-07,5;UBERON:0002315,2.13e-07,5 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0.219686182734472,0.58328969722285,0.139986421625363,0,0,0,0,0,0,0,2.02316460859598,1.5869729378161,2.53532561402472,0,0,0,0,0,1.79760066311043,2.68952813725088,0.414758449233911,0.810035629990144,0.210324961351382,2.28520787523043,3.09215957332259,0.244981598429908,0.575072826109418,0,6.60695285996332,1.78762273319263,3.84016333140609,3.03338461779446,1.9212405156506,2.6045668527838,1.11673199600552,1.68828783009504,2.29197371665215,2.94628585473668,2.70506193518296,0.931997229126503,0.075726193333184,0,0.579728977403356,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0,0,0.304465478312141,0,0.150722640552623,0.23517741427141,0,0,0,0,0,0,0,0,4.09893115816166,10.8912287542997,0,0,0,0,2.39665023047716,2.74500361691176,1.13088916901578,1.91206752211504,1.79000820131231,2.28566849015516,0.811206315338788,0.101839363850316,0,0,0,0,0,0.360124259610698,0.753524089178575,0.408218994907967,0.512454881139399,1.03071897015702,1.03481348295606,0,0,0,0,0.556094498451196,0,0,0.199034266818493,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0.164167464079095,0,0.146199987425332,0,0,1.68231958851302,0.617427674275707,0,0,0,0,0.128867461322093,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0.228497025219458,0,0,0.193952487167626,0.140271639780637,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0,0,0,0,0,0,1.76605648986571,0.820481806145422,0,0,0.315508219416257,0,0,0,0,0,0,0,0,3.85585579706168,0,0.534196811001766,0,0.164970122972535,0,0.485561272309963,0,0,0,0,0,0,0,0,0,0,0.680879211507576,0.36012218806262,0.646793418913773,0.214337035031592,0.354680467284547,0.356737635204141,0.493647061806363,0.304464949114599,0,0,0,0,0,0.0603129249281559,0.119372344003136,0,0.291480836629851,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.216010681643603,0,0,0,0.0826534557253359,0,0,0,0,0.299033092087958,0.165458490457098,0.194451188344048,0.258319646955462,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0.0974578807397524,0,0,0.226730383615211,0,0,0,0,0,0,0,0,4.51801474093653,5.52390283808612,5.15605962095457,4.29632955859219,2.74033007908257,3.0215755895588,6.07520250208625,5.85417564191487,4.07828168085784,4.14208249401456,0.103787347584177,0.798049746802062,0.341467211508268,0,0.209613162627982,0.551530525350042,0.44449345560323,0.412070114477788,0.64183841918363,0.505394423527595,0.50695859978048,0.565879024158229,0.37456602987953,0.704276676453562,0.34461281373368,0.476293691283074,0.579421629724277,0.578727661391115,0.412085900803307,0.588795680537589,0,0.532427418478012,0.715308569841963,0.145346416632329,0.282328141245992,0.423073039458382,0.73171189149109,0,0.135804113845862,0.561142271657738,0.237270036248348,0.788035859004508,0,0.464810523557898,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0.382576664137687,0,0 | |||
|short_description=p7@Nrxn2 | |||
}} |
Revision as of 18:22, 13 September 2013
Short description: | p7@Nrxn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Nrxn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:168 |
Association with transcript: | 189bp_to_ENSMUST00000113459, uc008giy.1_5end |
EntrezGene: | Nrxn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.84e-20 | 23 |
neuroblast (sensu Vertebrata) | 1.84e-20 | 23 |
neuron | 4.20e-13 | 33 |
neuronal stem cell | 4.20e-13 | 33 |
neuroblast | 4.20e-13 | 33 |
electrically signaling cell | 4.20e-13 | 33 |
neural cell | 4.83e-12 | 43 |
ectodermal cell | 1.13e-11 | 44 |
neurectodermal cell | 1.13e-11 | 44 |
electrically responsive cell | 1.63e-10 | 39 |
electrically active cell | 1.63e-10 | 39 |
raphe nuclei neuron | 1.42e-07 | 3 |
striatum neuron | 3.50e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.