FFCP PHASE1:Mm9::chr2:179839168..179839183,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=99296|HGNC=|MCL_coexpression_id=1|UniProt=P58406|association_with_transcript=9bp_to_ENSMUST00000056480_5end|description=CAGE_peak_1_at_Hrh3_5end|id=chr2:179839168..179839183,-|ontology_enrichment_celltype=CL:0000117!4.49e-16!23;CL:0000337!4.49e-16!23;CL:0000540!9.27e-15!33;CL:0000047!9.27e-15!33;CL:0000031!9.27e-15!33;CL:0000404!9.27e-15!33;CL:0002319!3.66e-11!43;CL:0000393!1.13e-10!39;CL:0000211!1.13e-10!39;CL:0000221!1.24e-10!44;CL:0000133!1.24e-10!44;CL:0000055!5.68e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,6.21e-27,23;CL:0000337,6.21e-27,23;CL:0000540,6.73e-17,33;CL:0000047,6.73e-17,33;CL:0000031,6.73e-17,33;CL:0000404,6.73e-17,33;CL:0000393,2.22e-13,39;CL:0000211,2.22e-13,39;CL:0002319,8.33e-13,43;CL:0000221,2.24e-12,44;CL:0000133,2.24e-12,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.81e-35!73;UBERON:0005743!3.81e-35!73;UBERON:0000073!1.92e-33!75;UBERON:0001016!1.92e-33!75;UBERON:0000033!3.74e-31!63;UBERON:0001049!1.17e-30!52;UBERON:0005068!1.17e-30!52;UBERON:0006241!1.17e-30!52;UBERON:0007135!1.17e-30!52;UBERON:0000955!4.28e-30!50;UBERON:0006238!4.28e-30!50;UBERON:0002346!4.50e-30!71;UBERON:0003075!4.50e-30!71;UBERON:0007284!4.50e-30!71;UBERON:0002616!2.82e-29!49;UBERON:0004121!7.33e-29!102;UBERON:0000924!7.33e-29!102;UBERON:0006601!7.33e-29!102;UBERON:0003056!2.40e-27!49;UBERON:0007811!2.15e-24!86;UBERON:0003080!5.14e-24!40;UBERON:0002780!3.32e-23!39;UBERON:0001890!3.32e-23!39;UBERON:0006240!3.32e-23!39;UBERON:0002020!2.08e-21!34;UBERON:0000153!9.69e-21!94;UBERON:0002791!2.98e-18!29;UBERON:0003528!2.98e-18!29;UBERON:0001893!2.98e-18!29;UBERON:0000956!1.39e-12!21;UBERON:0001869!1.39e-12!21;UBERON:0000203!1.39e-12!21;UBERON:0002619!2.58e-10!17;UBERON:0002021!1.11e-09!10;UBERON:0000411!1.11e-09!10;UBERON:0001950!1.11e-09!10;UBERON:0003076!4.78e-07!12;UBERON:0003057!4.78e-07!12;UBERON:0002420!6.19e-07!8;UBERON:0007245!6.19e-07!8;UBERON:0010009!6.19e-07!8;UBERON:0010011!6.19e-07!8;UBERON:0000454!6.19e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.19e-49,54;UBERON:0001049,1.92e-45,52;UBERON:0005068,1.92e-45,52;UBERON:0006241,1.92e-45,52;UBERON:0007135,1.92e-45,52;UBERON:0001017,2.51e-45,73;UBERON:0001016,8.84e-44,75;UBERON:0000955,3.64e-39,47;UBERON:0006238,3.64e-39,47;UBERON:0002346,7.74e-39,64;UBERON:0003075,7.74e-39,64;UBERON:0007284,7.74e-39,64;UBERON:0002020,1.88e-38,34;UBERON:0002616,1.01e-37,46;UBERON:0004121,3.11e-35,95;UBERON:0000924,3.11e-35,95;UBERON:0006601,3.11e-35,95;UBERON:0003080,2.97e-34,40;UBERON:0002780,8.60e-33,39;UBERON:0001890,8.60e-33,39;UBERON:0006240,8.60e-33,39;UBERON:0010371,1.35e-32,73;UBERON:0003528,2.05e-32,29;UBERON:0002791,2.05e-32,29;UBERON:0001893,2.05e-32,29;UBERON:0003056,3.33e-30,49;UBERON:0010314,1.91e-23,92;UBERON:0000956,1.29e-21,21;UBERON:0001869,1.29e-21,21;UBERON:0000203,1.29e-21,21;UBERON:0002619,1.94e-19,17;UBERON:0002021,4.89e-17,10;UBERON:0000411,4.89e-17,10;UBERON:0001950,4.89e-17,10;UBERON:0000025,1.78e-15,114;UBERON:0004111,1.18e-14,122;UBERON:0002420,8.14e-12,8;UBERON:0007245,8.14e-12,8;UBERON:0010009,8.14e-12,8;UBERON:0010011,8.14e-12,8;UBERON:0000454,8.14e-12,8;UBERON:0003076,7.34e-11,12;UBERON:0003057,7.34e-11,12;UBERON:0011216,7.42e-10,194;UBERON:0002240,2.74e-08,6;UBERON:0005174,2.74e-08,6;UBERON:0001137,2.74e-08,6;UBERON:0000483,1.26e-07,174;UBERON:0000369,1.26e-07,5;UBERON:0002435,1.26e-07,5;UBERON:0000204,1.26e-07,5;UBERON:0010082,1.26e-07,5;UBERON:0000119,2.05e-07,176;UBERON:0002950,3.65e-07,4;UBERON:0001891,3.65e-07,4;UBERON:0009616,3.65e-07,4;UBERON:0010286,3.65e-07,4;UBERON:0001948,5.60e-07,5;UBERON:0002315,5.60e-07,5|phase1_expression=0.320297694209588,0,0,0,0,0,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,9.26971862646661,0,0,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0,0,0.279972843250725,1.43752564364972,0,0,0,0,0,0,4.65327859977075,5.81890077199236,5.70448263155561,0,0,0,0,0,0,0,0.725827286159344,1.08004750665353,1.05162480675691,4.57041575046086,3.09215957332259,2.20483438586917,2.01275489138296,2.75765635983006,88.092704799511,69.5895992564273,63.4394982348286,5.27545150920775,3.01909223887952,3.64639359389732,32.3852278841602,43.3327209724394,41.1027286519619,2.94628585473668,2.27794689278565,1.67759501242771,0,0,0,0,0,0,0,0,1.68533304158102,0,0,0,0,0,0,0,0,0,0,1.02765491747154,0,0,0,0,0,0.301445281105245,0,0.125666591329675,0,0,0,0,0,0,0,10.5401086924157,8.58731497935166,0,0,0,0,38.9455662452539,91.0426199609067,1.25654352112864,71.2679712788333,53.1888151247088,71.8946634176078,63.598575122561,0,0.248813941220186,1.0108910337347,3.15662783829711,0.130120442962704,0.459804208866946,0.180062129805349,0.30140963567143,0.612328492361951,0.768682321709099,0.468508622798644,7.24369438069244,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.4875515645169,2.46971069710283,0,0.264450566663544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0,0.169745085775188,0.234690248288502,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,23.2798355482298,15.4719426301708,0,0,0,0.390438744296638,0.430846795465598,0.238968797952552,0.445597348164788,0.283076530788832,0,0.292255857911312,0,21.5285282002611,0,0,0,0,0,0,0,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,1.02131881726136,0.18006109403131,0.388076051348264,1.28602221018955,0.709360934569094,0.535106452806212,0.658196082408484,1.522324745573,0,0,0.220528398054962,0.32977250588296,0,0,0,0.164140899745061,0,15.9465759729038,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0.2604087696879,0,0,0,0.316011120628178,0,0,0.129920822977795,0.358053391334963,0.198681354781265,0,0.295379054349154,0.302899349844443,0.228620419965,0.201652370273681,0,0.288635524920988,0.467507608726276,0,0,0,0,2.31827512838629,0,0,0,0,48.5686584650677,51.0961012522966,49.8419096692275,43.478855132953,53.4364365421101,85.3595104050362,65.4771825224852,60.3430412320455,59.814797985915,82.8416498802912,1.03787347584177,0.798049746802062,0.682934423016537,0.243106717068294,0.209613162627982,0.551530525350042,0.222246727801615,0.824140228955577,0.320919209591815,0,0.50695859978048,0.565879024158229,0,0.640251524048693,0.402048282689293,0.952587382566147,0.115884325944855,0.192909220463705,0,0.441596760403192,0.342869252385415,0.354951612318675,0,0.290692833264657,0.0941093804153306,0.169229215783353,0.548783918618318,0,0,0,0.593175090620871,0.591026894253381,0,0.309873682371932,0.385813221962283,1.24905288968973,0.233931608445408,0.429742108096597,0.191288332068843,0.441182838239031,0.231867835620421|short_description=p1@Hrh3}} | ||
|EntrezGene=99296 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P58406 | |||
|association_with_transcript=9bp_to_ENSMUST00000056480_5end | |||
|description=CAGE_peak_1_at_Hrh3_5end | |||
|id=chr2:179839168..179839183,- | |||
|ontology_enrichment_celltype=CL:0000117!4.49e-16!23;CL:0000337!4.49e-16!23;CL:0000540!9.27e-15!33;CL:0000047!9.27e-15!33;CL:0000031!9.27e-15!33;CL:0000404!9.27e-15!33;CL:0002319!3.66e-11!43;CL:0000393!1.13e-10!39;CL:0000211!1.13e-10!39;CL:0000221!1.24e-10!44;CL:0000133!1.24e-10!44;CL:0000055!5.68e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.21e-27,23;CL:0000337,6.21e-27,23;CL:0000540,6.73e-17,33;CL:0000047,6.73e-17,33;CL:0000031,6.73e-17,33;CL:0000404,6.73e-17,33;CL:0000393,2.22e-13,39;CL:0000211,2.22e-13,39;CL:0002319,8.33e-13,43;CL:0000221,2.24e-12,44;CL:0000133,2.24e-12,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.81e-35!73;UBERON:0005743!3.81e-35!73;UBERON:0000073!1.92e-33!75;UBERON:0001016!1.92e-33!75;UBERON:0000033!3.74e-31!63;UBERON:0001049!1.17e-30!52;UBERON:0005068!1.17e-30!52;UBERON:0006241!1.17e-30!52;UBERON:0007135!1.17e-30!52;UBERON:0000955!4.28e-30!50;UBERON:0006238!4.28e-30!50;UBERON:0002346!4.50e-30!71;UBERON:0003075!4.50e-30!71;UBERON:0007284!4.50e-30!71;UBERON:0002616!2.82e-29!49;UBERON:0004121!7.33e-29!102;UBERON:0000924!7.33e-29!102;UBERON:0006601!7.33e-29!102;UBERON:0003056!2.40e-27!49;UBERON:0007811!2.15e-24!86;UBERON:0003080!5.14e-24!40;UBERON:0002780!3.32e-23!39;UBERON:0001890!3.32e-23!39;UBERON:0006240!3.32e-23!39;UBERON:0002020!2.08e-21!34;UBERON:0000153!9.69e-21!94;UBERON:0002791!2.98e-18!29;UBERON:0003528!2.98e-18!29;UBERON:0001893!2.98e-18!29;UBERON:0000956!1.39e-12!21;UBERON:0001869!1.39e-12!21;UBERON:0000203!1.39e-12!21;UBERON:0002619!2.58e-10!17;UBERON:0002021!1.11e-09!10;UBERON:0000411!1.11e-09!10;UBERON:0001950!1.11e-09!10;UBERON:0003076!4.78e-07!12;UBERON:0003057!4.78e-07!12;UBERON:0002420!6.19e-07!8;UBERON:0007245!6.19e-07!8;UBERON:0010009!6.19e-07!8;UBERON:0010011!6.19e-07!8;UBERON:0000454!6.19e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.19e-49,54;UBERON:0001049,1.92e-45,52;UBERON:0005068,1.92e-45,52;UBERON:0006241,1.92e-45,52;UBERON:0007135,1.92e-45,52;UBERON:0001017,2.51e-45,73;UBERON:0001016,8.84e-44,75;UBERON:0000955,3.64e-39,47;UBERON:0006238,3.64e-39,47;UBERON:0002346,7.74e-39,64;UBERON:0003075,7.74e-39,64;UBERON:0007284,7.74e-39,64;UBERON:0002020,1.88e-38,34;UBERON:0002616,1.01e-37,46;UBERON:0004121,3.11e-35,95;UBERON:0000924,3.11e-35,95;UBERON:0006601,3.11e-35,95;UBERON:0003080,2.97e-34,40;UBERON:0002780,8.60e-33,39;UBERON:0001890,8.60e-33,39;UBERON:0006240,8.60e-33,39;UBERON:0010371,1.35e-32,73;UBERON:0003528,2.05e-32,29;UBERON:0002791,2.05e-32,29;UBERON:0001893,2.05e-32,29;UBERON:0003056,3.33e-30,49;UBERON:0010314,1.91e-23,92;UBERON:0000956,1.29e-21,21;UBERON:0001869,1.29e-21,21;UBERON:0000203,1.29e-21,21;UBERON:0002619,1.94e-19,17;UBERON:0002021,4.89e-17,10;UBERON:0000411,4.89e-17,10;UBERON:0001950,4.89e-17,10;UBERON:0000025,1.78e-15,114;UBERON:0004111,1.18e-14,122;UBERON:0002420,8.14e-12,8;UBERON:0007245,8.14e-12,8;UBERON:0010009,8.14e-12,8;UBERON:0010011,8.14e-12,8;UBERON:0000454,8.14e-12,8;UBERON:0003076,7.34e-11,12;UBERON:0003057,7.34e-11,12;UBERON:0011216,7.42e-10,194;UBERON:0002240,2.74e-08,6;UBERON:0005174,2.74e-08,6;UBERON:0001137,2.74e-08,6;UBERON:0000483,1.26e-07,174;UBERON:0000369,1.26e-07,5;UBERON:0002435,1.26e-07,5;UBERON:0000204,1.26e-07,5;UBERON:0010082,1.26e-07,5;UBERON:0000119,2.05e-07,176;UBERON:0002950,3.65e-07,4;UBERON:0001891,3.65e-07,4;UBERON:0009616,3.65e-07,4;UBERON:0010286,3.65e-07,4;UBERON:0001948,5.60e-07,5;UBERON:0002315,5.60e-07,5 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,9.26971862646661,0,0,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0,0,0.279972843250725,1.43752564364972,0,0,0,0,0,0,4.65327859977075,5.81890077199236,5.70448263155561,0,0,0,0,0,0,0,0.725827286159344,1.08004750665353,1.05162480675691,4.57041575046086,3.09215957332259,2.20483438586917,2.01275489138296,2.75765635983006,88.092704799511,69.5895992564273,63.4394982348286,5.27545150920775,3.01909223887952,3.64639359389732,32.3852278841602,43.3327209724394,41.1027286519619,2.94628585473668,2.27794689278565,1.67759501242771,0,0,0,0,0,0,0,0,1.68533304158102,0,0,0,0,0,0,0,0,0,0,1.02765491747154,0,0,0,0,0,0.301445281105245,0,0.125666591329675,0,0,0,0,0,0,0,10.5401086924157,8.58731497935166,0,0,0,0,38.9455662452539,91.0426199609067,1.25654352112864,71.2679712788333,53.1888151247088,71.8946634176078,63.598575122561,0,0.248813941220186,1.0108910337347,3.15662783829711,0.130120442962704,0.459804208866946,0.180062129805349,0.30140963567143,0.612328492361951,0.768682321709099,0.468508622798644,7.24369438069244,0,0.189106080167819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.4875515645169,2.46971069710283,0,0.264450566663544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0,0,0,0,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0,0.169745085775188,0.234690248288502,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,23.2798355482298,15.4719426301708,0,0,0,0.390438744296638,0.430846795465598,0.238968797952552,0.445597348164788,0.283076530788832,0,0.292255857911312,0,21.5285282002611,0,0,0,0,0,0,0,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,1.02131881726136,0.18006109403131,0.388076051348264,1.28602221018955,0.709360934569094,0.535106452806212,0.658196082408484,1.522324745573,0,0,0.220528398054962,0.32977250588296,0,0,0,0.164140899745061,0,15.9465759729038,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0.2604087696879,0,0,0,0.316011120628178,0,0,0.129920822977795,0.358053391334963,0.198681354781265,0,0.295379054349154,0.302899349844443,0.228620419965,0.201652370273681,0,0.288635524920988,0.467507608726276,0,0,0,0,2.31827512838629,0,0,0,0,48.5686584650677,51.0961012522966,49.8419096692275,43.478855132953,53.4364365421101,85.3595104050362,65.4771825224852,60.3430412320455,59.814797985915,82.8416498802912,1.03787347584177,0.798049746802062,0.682934423016537,0.243106717068294,0.209613162627982,0.551530525350042,0.222246727801615,0.824140228955577,0.320919209591815,0,0.50695859978048,0.565879024158229,0,0.640251524048693,0.402048282689293,0.952587382566147,0.115884325944855,0.192909220463705,0,0.441596760403192,0.342869252385415,0.354951612318675,0,0.290692833264657,0.0941093804153306,0.169229215783353,0.548783918618318,0,0,0,0.593175090620871,0.591026894253381,0,0.309873682371932,0.385813221962283,1.24905288968973,0.233931608445408,0.429742108096597,0.191288332068843,0.441182838239031,0.231867835620421 | |||
|short_description=p1@Hrh3 | |||
}} |
Revision as of 23:11, 13 September 2013
Short description: | p1@Hrh3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hrh3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 9bp_to_ENSMUST00000056480_5end |
EntrezGene: | Hrh3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.21e-27 | 23 |
neuroblast (sensu Vertebrata) | 6.21e-27 | 23 |
neuron | 6.73e-17 | 33 |
neuronal stem cell | 6.73e-17 | 33 |
neuroblast | 6.73e-17 | 33 |
electrically signaling cell | 6.73e-17 | 33 |
electrically responsive cell | 2.22e-13 | 39 |
electrically active cell | 2.22e-13 | 39 |
neural cell | 8.33e-13 | 43 |
ectodermal cell | 2.24e-12 | 44 |
neurectodermal cell | 2.24e-12 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.