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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008580
|DRA_sample_Accession=CAGE@DRS008580
|accession_numbers=CAGE;DRX008689;DRR009561;DRZ000986;DRZ002371
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001882,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000349,UBERON:0005403,UBERON:0010011,UBERON:0000204,UBERON:0000454
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001882,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000349,UBERON:0005403,UBERON:0010011,UBERON:0000204,UBERON:0000454
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0010037
|is_a=EFO:0002091;;FF:0010037
|is_obsolete=
|is_obsolete=
|library_id=CNhs10644
|library_ids=CNhs10644
|library_ids=CNhs10644
|name=nucleus accumbens, adult, pool1
|name=nucleus accumbens, adult, pool1
Line 87: Line 89:
|top_motifs=EGR1..3:4.27032870351;REST:4.2233675934;NHLH1,2:4.08693382917;MYFfamily:3.9576861639;AHR_ARNT_ARNT2:3.80438464692;ZFP161:3.73069369632;MED-1{core}:3.64681973629;PRRX1,2:3.58941422963;RFX1:3.58625786871;MTE{core}:3.55097693688;ATF2:3.47721041067;RREB1:3.24261941421;ZBTB6:3.22860617041;PAX5:3.22641738852;OCT4_SOX2{dimer}:3.03638256017;TFAP2B:3.02565133813;CUX2:2.95925364054;MZF1:2.93997075308;GTF2I:2.91804464166;HIC1:2.87177513928;MTF1:2.86970349373;RFX2..5_RFXANK_RFXAP:2.84825854971;SOX2:2.80210718512;PRDM1:2.80078555019;SOX5:2.68311659905;NKX2-3_NKX2-5:2.63794717718;BREu{core}:2.58930555726;SMAD1..7,9:2.52433517117;DBP:2.50965884867;NANOG:2.48197406753;SOX{8,9,10}:2.40359546932;TGIF1:2.33941120011;POU6F1:2.32357029521;LMO2:2.32203206361;MAZ:2.32138898499;NKX3-2:2.3197732737;PATZ1:2.26291294985;HOXA9_MEIS1:2.11510755522;SOX17:2.09400767902;FOXM1:2.09337206568;JUN:2.03870285271;POU5F1:2.03779733851;HBP1_HMGB_SSRP1_UBTF:2.03142199219;MAFB:2.00037193052;GFI1B:1.85853323128;NRF1:1.79782874382;RBPJ:1.78817535543;GCM1,2:1.74920927309;TFDP1:1.73667428685;NFIX:1.70872056886;EP300:1.63504865519;LEF1_TCF7_TCF7L1,2:1.618221466;EBF1:1.61360301566;CDC5L:1.53818718405;SP1:1.51287501695;GATA4:1.49315868799;FOX{F1,F2,J1}:1.48391189695;ADNP_IRX_SIX_ZHX:1.47514429167;PAX6:1.43250650724;XBP1:1.40325188865;TLX2:1.39773478084;KLF4:1.35516192955;MYOD1:1.34241659269;GTF2A1,2:1.29198398326;ZNF238:1.27571486135;HOX{A4,D4}:1.27518958465;NFIL3:1.26542444301;ARID5B:1.23790760184;HMGA1,2:1.18691158484;ESRRA:1.17161331062;SREBF1,2:1.17049272992;CRX:1.04749051458;POU3F1..4:1.02160064427;CREB1:0.952991641266;HAND1,2:0.948906275725;ALX1:0.941706454401;ZNF423:0.930234045763;FOXN1:0.918874913643;ZNF143:0.911320571171;RORA:0.900188867757;HMX1:0.889630988269;MEF2{A,B,C,D}:0.872475306853;STAT1,3:0.872411323616;GFI1:0.842705753056;FOXP3:0.796247587869;TFAP2{A,C}:0.793718329446;T:0.792691725409;PBX1:0.760567366042;ZEB1:0.721370975057;NKX6-1,2:0.719403630478;FOXQ1:0.718504090982;VSX1,2:0.657060566957;ONECUT1,2:0.637642514244;ZIC1..3:0.63669570231;TLX1..3_NFIC{dimer}:0.591764250723;YY1:0.538175713941;TBX4,5:0.538077390932;FOXP1:0.524031295774;BPTF:0.518761007374;ZNF384:0.484846311544;SPZ1:0.47649144113;MYBL2:0.458448015353;PAX1,9:0.457140202432;FOX{D1,D2}:0.454288496626;ATF5_CREB3:0.435303106827;bHLH_family:0.421812483231;NR3C1:0.384628679776;AR:0.367462597733;ATF4:0.356894167757;XCPE1{core}:0.351030368304;GZF1:0.335138891844;PDX1:0.30871789012;PAX2:0.231070069701;LHX3,4:0.134011233187;FOX{I1,J2}:0.119671407096;NFY{A,B,C}:0.0991551945353;IRF7:-0.0330992057697;IKZF1:-0.0793769720466;POU1F1:-0.0846638451346;HOX{A6,A7,B6,B7}:-0.116179063589;NFE2L2:-0.122992381177;SNAI1..3:-0.125917692428;NANOG{mouse}:-0.172851784003;HSF1,2:-0.174410747243;NFATC1..3:-0.204592435637;PAX3,7:-0.216933039508;PAX4:-0.237006897104;TFAP4:-0.239545483858;TEF:-0.272977061829;GATA6:-0.302266930915;FOXD3:-0.350429837441;IKZF2:-0.359074039005;ZNF148:-0.396727205889;PAX8:-0.398494297676;FOXO1,3,4:-0.400433437684;FOXA2:-0.422777744036;TOPORS:-0.447310509405;NR5A1,2:-0.458331988498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.463072801399;SPI1:-0.480223424539;IRF1,2:-0.484727949622;NFE2:-0.485864944367;TFCP2:-0.51949691668;STAT2,4,6:-0.551559013824;DMAP1_NCOR{1,2}_SMARC:-0.627880594069;NFE2L1:-0.634711288162;SPIB:-0.680480100666;ETS1,2:-0.688127348841;FOXL1:-0.694642161404;CEBPA,B_DDIT3:-0.715061169937;UFEwm:-0.716616498013;ATF6:-0.749200988441;HNF1A:-0.76016557315;TAL1_TCF{3,4,12}:-0.79975794039;ESR1:-0.805036102273;FOSL2:-0.815809416062;GLI1..3:-0.863335125865;FOS_FOS{B,L1}_JUN{B,D}:-0.877318066231;TP53:-0.894904512153;ELK1,4_GABP{A,B1}:-0.913603550594;NR1H4:-0.920775089322;TEAD1:-0.93531135345;BACH2:-1.00254288186;SRF:-1.02719983428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08239716518;HIF1A:-1.11654619284;TBP:-1.11920556721;RUNX1..3:-1.12572527792;HNF4A_NR2F1,2:-1.14217289008;NFKB1_REL_RELA:-1.18553241935;HLF:-1.21879684774;MYB:-1.31989517876;RXR{A,B,G}:-1.32457691952;E2F1..5:-1.35922589183;NKX3-1:-1.37833569373;ZBTB16:-1.4024923548;POU2F1..3:-1.43105071055;ELF1,2,4:-1.45196793654;HES1:-1.50960798392;PPARG:-1.51330304328;NKX2-1,4:-1.75832198157;RXRA_VDR{dimer}:-1.76362460337;ALX4:-1.79174792163;STAT5{A,B}:-1.79540850149;NKX2-2,8:-1.80628762244;CDX1,2,4:-1.80845257353;EVI1:-1.82256606458;EN1,2:-1.82278933602;PITX1..3:-1.9369494986;AIRE:-2.50634290409;HOX{A5,B5}:-2.56251986684;NR6A1:-3.09880515875
|top_motifs=EGR1..3:4.27032870351;REST:4.2233675934;NHLH1,2:4.08693382917;MYFfamily:3.9576861639;AHR_ARNT_ARNT2:3.80438464692;ZFP161:3.73069369632;MED-1{core}:3.64681973629;PRRX1,2:3.58941422963;RFX1:3.58625786871;MTE{core}:3.55097693688;ATF2:3.47721041067;RREB1:3.24261941421;ZBTB6:3.22860617041;PAX5:3.22641738852;OCT4_SOX2{dimer}:3.03638256017;TFAP2B:3.02565133813;CUX2:2.95925364054;MZF1:2.93997075308;GTF2I:2.91804464166;HIC1:2.87177513928;MTF1:2.86970349373;RFX2..5_RFXANK_RFXAP:2.84825854971;SOX2:2.80210718512;PRDM1:2.80078555019;SOX5:2.68311659905;NKX2-3_NKX2-5:2.63794717718;BREu{core}:2.58930555726;SMAD1..7,9:2.52433517117;DBP:2.50965884867;NANOG:2.48197406753;SOX{8,9,10}:2.40359546932;TGIF1:2.33941120011;POU6F1:2.32357029521;LMO2:2.32203206361;MAZ:2.32138898499;NKX3-2:2.3197732737;PATZ1:2.26291294985;HOXA9_MEIS1:2.11510755522;SOX17:2.09400767902;FOXM1:2.09337206568;JUN:2.03870285271;POU5F1:2.03779733851;HBP1_HMGB_SSRP1_UBTF:2.03142199219;MAFB:2.00037193052;GFI1B:1.85853323128;NRF1:1.79782874382;RBPJ:1.78817535543;GCM1,2:1.74920927309;TFDP1:1.73667428685;NFIX:1.70872056886;EP300:1.63504865519;LEF1_TCF7_TCF7L1,2:1.618221466;EBF1:1.61360301566;CDC5L:1.53818718405;SP1:1.51287501695;GATA4:1.49315868799;FOX{F1,F2,J1}:1.48391189695;ADNP_IRX_SIX_ZHX:1.47514429167;PAX6:1.43250650724;XBP1:1.40325188865;TLX2:1.39773478084;KLF4:1.35516192955;MYOD1:1.34241659269;GTF2A1,2:1.29198398326;ZNF238:1.27571486135;HOX{A4,D4}:1.27518958465;NFIL3:1.26542444301;ARID5B:1.23790760184;HMGA1,2:1.18691158484;ESRRA:1.17161331062;SREBF1,2:1.17049272992;CRX:1.04749051458;POU3F1..4:1.02160064427;CREB1:0.952991641266;HAND1,2:0.948906275725;ALX1:0.941706454401;ZNF423:0.930234045763;FOXN1:0.918874913643;ZNF143:0.911320571171;RORA:0.900188867757;HMX1:0.889630988269;MEF2{A,B,C,D}:0.872475306853;STAT1,3:0.872411323616;GFI1:0.842705753056;FOXP3:0.796247587869;TFAP2{A,C}:0.793718329446;T:0.792691725409;PBX1:0.760567366042;ZEB1:0.721370975057;NKX6-1,2:0.719403630478;FOXQ1:0.718504090982;VSX1,2:0.657060566957;ONECUT1,2:0.637642514244;ZIC1..3:0.63669570231;TLX1..3_NFIC{dimer}:0.591764250723;YY1:0.538175713941;TBX4,5:0.538077390932;FOXP1:0.524031295774;BPTF:0.518761007374;ZNF384:0.484846311544;SPZ1:0.47649144113;MYBL2:0.458448015353;PAX1,9:0.457140202432;FOX{D1,D2}:0.454288496626;ATF5_CREB3:0.435303106827;bHLH_family:0.421812483231;NR3C1:0.384628679776;AR:0.367462597733;ATF4:0.356894167757;XCPE1{core}:0.351030368304;GZF1:0.335138891844;PDX1:0.30871789012;PAX2:0.231070069701;LHX3,4:0.134011233187;FOX{I1,J2}:0.119671407096;NFY{A,B,C}:0.0991551945353;IRF7:-0.0330992057697;IKZF1:-0.0793769720466;POU1F1:-0.0846638451346;HOX{A6,A7,B6,B7}:-0.116179063589;NFE2L2:-0.122992381177;SNAI1..3:-0.125917692428;NANOG{mouse}:-0.172851784003;HSF1,2:-0.174410747243;NFATC1..3:-0.204592435637;PAX3,7:-0.216933039508;PAX4:-0.237006897104;TFAP4:-0.239545483858;TEF:-0.272977061829;GATA6:-0.302266930915;FOXD3:-0.350429837441;IKZF2:-0.359074039005;ZNF148:-0.396727205889;PAX8:-0.398494297676;FOXO1,3,4:-0.400433437684;FOXA2:-0.422777744036;TOPORS:-0.447310509405;NR5A1,2:-0.458331988498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.463072801399;SPI1:-0.480223424539;IRF1,2:-0.484727949622;NFE2:-0.485864944367;TFCP2:-0.51949691668;STAT2,4,6:-0.551559013824;DMAP1_NCOR{1,2}_SMARC:-0.627880594069;NFE2L1:-0.634711288162;SPIB:-0.680480100666;ETS1,2:-0.688127348841;FOXL1:-0.694642161404;CEBPA,B_DDIT3:-0.715061169937;UFEwm:-0.716616498013;ATF6:-0.749200988441;HNF1A:-0.76016557315;TAL1_TCF{3,4,12}:-0.79975794039;ESR1:-0.805036102273;FOSL2:-0.815809416062;GLI1..3:-0.863335125865;FOS_FOS{B,L1}_JUN{B,D}:-0.877318066231;TP53:-0.894904512153;ELK1,4_GABP{A,B1}:-0.913603550594;NR1H4:-0.920775089322;TEAD1:-0.93531135345;BACH2:-1.00254288186;SRF:-1.02719983428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08239716518;HIF1A:-1.11654619284;TBP:-1.11920556721;RUNX1..3:-1.12572527792;HNF4A_NR2F1,2:-1.14217289008;NFKB1_REL_RELA:-1.18553241935;HLF:-1.21879684774;MYB:-1.31989517876;RXR{A,B,G}:-1.32457691952;E2F1..5:-1.35922589183;NKX3-1:-1.37833569373;ZBTB16:-1.4024923548;POU2F1..3:-1.43105071055;ELF1,2,4:-1.45196793654;HES1:-1.50960798392;PPARG:-1.51330304328;NKX2-1,4:-1.75832198157;RXRA_VDR{dimer}:-1.76362460337;ALX4:-1.79174792163;STAT5{A,B}:-1.79540850149;NKX2-2,8:-1.80628762244;CDX1,2,4:-1.80845257353;EVI1:-1.82256606458;EN1,2:-1.82278933602;PITX1..3:-1.9369494986;AIRE:-2.50634290409;HOX{A5,B5}:-2.56251986684;NR6A1:-3.09880515875
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008580
|accession_numbers=DRX008689;DRR009561;DRZ000986;DRZ002371;CAGE
|library_id=CNhs10644
}}
}}

Revision as of 19:53, 17 October 2013


Name:nucleus accumbens, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10644
Sample type:tissues
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuenucleus accumbens
dev stage23-56 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number6070307
catalog numberCat:636569
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008580
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10644 CAGE DRX008689 DRR009561
Accession ID Hg19

Library idBAMCTSS
CNhs10644 DRZ000986 DRZ002371
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.346
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.333
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0525
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.383
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.512
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.027
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.142
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0191
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0993
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.142
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.0993
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.027
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.17
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.3
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.027
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.027
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.133
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.161
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.218
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-1.018
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.027
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0987
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.394
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0525
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0525
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.618
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.027
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.18
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0337
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.102
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.416
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.027
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0.027
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.334
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.232
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.537
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.327
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.667
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.027
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.131
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.161
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0.027
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0398
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.697
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.0977
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.583
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.405
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0525
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.198
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.027
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10644

Jaspar motifP-value
MA0002.20.0106
MA0003.10.358
MA0004.10.469
MA0006.10.369
MA0007.10.215
MA0009.10.212
MA0014.10.687
MA0017.10.0031
MA0018.20.0738
MA0019.10.791
MA0024.10.988
MA0025.10.184
MA0027.10.406
MA0028.10.133
MA0029.10.0541
MA0030.10.193
MA0031.10.972
MA0035.20.128
MA0038.10.0357
MA0039.20.293
MA0040.10.558
MA0041.10.226
MA0042.10.624
MA0043.10.321
MA0046.10.0986
MA0047.20.132
MA0048.10.118
MA0050.10.018
MA0051.10.141
MA0052.10.119
MA0055.10.00286
MA0057.10.944
MA0058.10.434
MA0059.10.0813
MA0060.10.194
MA0061.10.00975
MA0062.20.0351
MA0065.24.9768e-4
MA0066.10.0236
MA0067.10.648
MA0068.10.361
MA0069.10.542
MA0070.10.099
MA0071.10.0255
MA0072.10.418
MA0073.10.37
MA0074.10.211
MA0076.10.328
MA0077.10.28
MA0078.10.793
MA0079.20.376
MA0080.23.85317e-8
MA0081.10.0651
MA0083.10.164
MA0084.10.481
MA0087.10.347
MA0088.10.135
MA0090.10.251
MA0091.10.382
MA0092.10.331
MA0093.10.507
MA0099.27.97974e-11
MA0100.10.841
MA0101.10.00927
MA0102.20.205
MA0103.10.227
MA0104.20.45
MA0105.15.466e-4
MA0106.10.0278
MA0107.10.0124
MA0108.20.341
MA0111.10.442
MA0112.27.95935e-4
MA0113.10.335
MA0114.10.0031
MA0115.10.304
MA0116.10.00374
MA0117.10.912
MA0119.10.0473
MA0122.10.957
MA0124.10.581
MA0125.10.172
MA0131.10.921
MA0135.10.0118
MA0136.16.82446e-10
MA0137.20.62
MA0138.20.285
MA0139.10.378
MA0140.10.0176
MA0141.10.0109
MA0142.10.901
MA0143.10.702
MA0144.10.337
MA0145.10.216
MA0146.10.012
MA0147.10.318
MA0148.10.126
MA0149.10.011
MA0150.10.00183
MA0152.10.865
MA0153.10.637
MA0154.10.035
MA0155.10.701
MA0156.14.90092e-5
MA0157.10.545
MA0159.10.00771
MA0160.10.0339
MA0162.10.109
MA0163.11.73581e-6
MA0164.10.673
MA0258.10.00992
MA0259.10.779



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10644

Novel motifP-value
10.0299
100.0264
1000.26
1010.717
1020.818
1030.209
1040.163
1050.372
1060.0516
1070.126
1080.771
1090.00923
110.0136
1100.0458
1110.0536
1120.351
1130.658
1140.0847
1150.951
1160.159
1170.00991
1180.12
1190.0902
120.838
1200.13
1210.646
1220.564
1230.41
1240.072
1250.177
1260.0343
1270.466
1280.157
1290.543
130.00207
1300.679
1310.0397
1320.732
1330.0012
1340.296
1350.192
1360.0133
1370.751
1380.818
1390.0777
140.883
1400.0974
1410.185
1420.772
1430.0109
1440.816
1450.0964
1460.585
1470.926
1480.0932
1490.332
150.0805
1500.178
1510.595
1520.125
1530.736
1540.576
1550.354
1560.492
1570.494
1580.755
1590.0533
160.0659
1600.184
1610.254
1620.942
1630.991
1640.0185
1650.0374
1660.86
1670.283
1680.621
1690.00686
170.151
180.178
190.175
20.984
200.0864
210.0868
220.242
230.432
240.136
250.479
261.99153e-4
270.888
280.723
290.0121
30.0287
300.575
310.86
320.0261
330.0732
340.803
350.483
360.0835
370.0345
380.313
390.271
40.889
400.0465
410.458
420.193
430.104
440.0872
450.805
460.0534
470.0576
480.0545
490.12
50.437
500.368
510.51
520.658
530.954
540.467
550.349
560.484
570.23
580.29
590.121
60.569
600.0831
610.0874
620.168
630.158
640.173
650.26
660.271
670.329
680.395
690.28
70.0696
700.0142
710.0102
720.449
730.0419
740.525
750.0266
760.36
770.188
780.002
790.134
80.0503
800.976
810.502
820.387
830.219
840.713
850.182
860.203
870.00611
880.843
890.497
90.545
900.0365
910.309
920.4
930.784
940.0575
950.031
960.9
970.778
980.173
990.635



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10644


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001882 (nucleus accumbens)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000349 (limbic system)
0005403 (ventral striatum)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010037 (human nucleus accumbens - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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