FFCP PHASE1:Hg19::chr2:163645495..163645498,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:163645495..163645498,- | |||
|coexpression_cluster_id=C2567 | |||
|description=CAGE_peak_at_chr2:163645495..163645498,- | |description=CAGE_peak_at_chr2:163645495..163645498,- | ||
|id=chr2:163645495..163645498,- | |id=chr2:163645495..163645498,- | ||
|ontology_enrichment_celltype=CL:0000242!5.62e-07!2 | |ontology_enrichment_celltype=CL:0000242!5.62e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000123;5.49e-09;2!CL:0000242;5.49e-09;2!CL:0000047;7.49e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.08e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.25e-16;1 | |||
|ontology_enrichment_disease=DOID:171!3.69e-09!10;DOID:169!2.75e-07!6 | |ontology_enrichment_disease=DOID:171!3.69e-09!10;DOID:169!2.75e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:3119;1.87e-10;14!DOID:154;7.49e-09;2!DOID:4236;7.49e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,1.90e-10,14;DOID:154,6.94e-09,2;DOID:4236,6.94e-09,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000941;2.25e-16;1!UBERON:0001785;2.25e-16;1!UBERON:0002464;2.25e-16;1!UBERON:0004904;2.25e-16;1!UBERON:0001021;2.25e-16;1!UBERON:0001950;3.91e-12;20!UBERON:0002619;4.19e-11;22!UBERON:0000956;7.45e-10;25!UBERON:0000203;7.45e-10;25!UBERON:0001871;8.91e-10;6!UBERON:0000007;7.49e-09;2!UBERON:0003714;7.49e-09;2!UBERON:0005162;7.49e-09;2!UBERON:0000122;7.49e-09;2!UBERON:0000922;3.27e-08;49!UBERON:0002780;3.68e-08;41!UBERON:0001890;3.68e-08;41!UBERON:0002791;1.16e-07;32!UBERON:0001869;1.46e-07;32!UBERON:0003528;5.41e-07;34!UBERON:0002020;5.41e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.25e-16,1;UBERON:0001785,2.25e-16,1;UBERON:0002464,2.25e-16,1;UBERON:0004904,2.25e-16,1;UBERON:0001021,2.25e-16,1;UBERON:0003902,2.25e-16,1;UBERON:0005425,2.25e-16,1;UBERON:0001950,3.80e-12,20;UBERON:0002619,4.08e-11,22;UBERON:0000956,7.28e-10,25;UBERON:0000203,7.28e-10,25;UBERON:0001871,8.35e-10,6;UBERON:0002780,3.42e-09,41;UBERON:0001890,3.42e-09,41;UBERON:0003080,3.42e-09,41;UBERON:0006240,3.42e-09,41;UBERON:0003714,7.49e-09,2;UBERON:0005162,7.49e-09,2;UBERON:0000122,7.49e-09,2;UBERON:0000007,8.74e-09,2;UBERON:0003056,1.12e-08,61;UBERON:0002791,8.03e-08,32;UBERON:0001869,8.03e-08,32;UBERON:0001016,1.10e-07,89;UBERON:0003528,2.19e-07,34;UBERON:0002020,2.19e-07,34;UBERON:0001893,2.19e-07,34;UBERON:0000073,3.87e-07,53;UBERON:0002616,3.87e-07,53;UBERON:0001049,9.27e-07,56;UBERON:0005068,9.27e-07,56;UBERON:0006241,9.27e-07,56;UBERON:0007135,9.27e-07,56 | |||
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| ||
|short_description=p@chr2:163645495..163645498,- | |short_description=p@chr2:163645495..163645498,- | ||
}} | }} |
Latest revision as of 02:00, 29 July 2015
Short description: | p@chr2:163645495..163645498, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:163645495..163645498, - |
Coexpression cluster: | C2567_merkel_neuroblastoma_parietal_occipital_duodenum_temporal_brain |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.08e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.25e-16 | 1 |
cranial nerve | 2.25e-16 | 1 |
nerve trunk | 2.25e-16 | 1 |
nerve connecting eye with brain | 2.25e-16 | 1 |
nerve | 2.25e-16 | 1 |
retinal neural layer | 2.25e-16 | 1 |
presumptive neural retina | 2.25e-16 | 1 |
neocortex | 3.80e-12 | 20 |
regional part of cerebral cortex | 4.08e-11 | 22 |
cerebral cortex | 7.28e-10 | 25 |
pallium | 7.28e-10 | 25 |
temporal lobe | 8.35e-10 | 6 |
regional part of forebrain | 3.42e-09 | 41 |
forebrain | 3.42e-09 | 41 |
anterior neural tube | 3.42e-09 | 41 |
future forebrain | 3.42e-09 | 41 |
neural tissue | 7.49e-09 | 2 |
multi cell component structure | 7.49e-09 | 2 |
neuron projection bundle | 7.49e-09 | 2 |
pituitary gland | 8.74e-09 | 2 |
pre-chordal neural plate | 1.12e-08 | 61 |
regional part of telencephalon | 8.03e-08 | 32 |
cerebral hemisphere | 8.03e-08 | 32 |
nervous system | 1.10e-07 | 89 |
brain grey matter | 2.19e-07 | 34 |
gray matter | 2.19e-07 | 34 |
telencephalon | 2.19e-07 | 34 |
regional part of nervous system | 3.87e-07 | 53 |
regional part of brain | 3.87e-07 | 53 |
neural tube | 9.27e-07 | 56 |
neural rod | 9.27e-07 | 56 |
future spinal cord | 9.27e-07 | 56 |
neural keel | 9.27e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.90e-10 | 14 |
mixed cell type cancer | 6.94e-09 | 2 |
carcinosarcoma | 6.94e-09 | 2 |