FFCP PHASE1:Hg19::chr2:45169233..45169244,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:45169233..45169244,+ to FFCP PHASE1:Hg19::chr2:45169233..45169244,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6496 | |EntrezGene=6496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |HGNC=10889 | ||
|TSSclassifier=strong | |||
|UniProt=O95343 | |UniProt=O95343 | ||
|association_with_transcript=196bp_to_NM_005413,uc002run.1_5end | |||
|cluster_id=chr2:45169233..45169244,+ | |||
|coexpression_cluster_id=C573 | |||
|description=CAGE_peak_10_at_SIX3_5end | |||
|id=chr2:45169233..45169244,+ | |||
|ontology_enrichment_celltype=CL:0000064!2.07e-12!3;CL:0005012!2.07e-12!3;CL:0000067!2.07e-12!3;CL:0002304!2.07e-12!3;CL:0002586!2.59e-12!3;CL:0002322!1.03e-11!5;CL:0000306!2.18e-09!4;CL:0002222!2.18e-09!4;CL:0002224!2.18e-09!4;CL:0000149!2.50e-09!4;CL:0000147!4.50e-09!14;CL:0000075!1.09e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000064;4.53e-36;3!CL:0000067;4.53e-36;3!CL:0005012;4.53e-36;3!CL:0002304;4.53e-36;3!CL:0002586;8.71e-36;3!CL:0000306;2.31e-27;4!CL:0002222;2.31e-27;4!CL:0002224;2.31e-27;4!CL:0000149;4.93e-27;4!CL:0000075;8.32e-21;27!CL:0000147;8.98e-21;14!CL:0000342;5.07e-13;1!CL:0002565;5.07e-13;1!CL:0000710;1.17e-09;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,3.36e-36,3;CL:0000067,3.36e-36,3;CL:0005012,3.36e-36,3;CL:0002304,3.36e-36,3;CL:0002586,6.87e-36,3;CL:0000306,2.64e-27,4;CL:0002222,2.64e-27,4;CL:0002224,2.64e-27,4;CL:0000149,4.13e-27,4;CL:0000075,8.45e-21,27;CL:0000147,8.98e-21,14;CL:0000342,5.38e-13,1;CL:0002565,5.38e-13,1;CL:0000710,1.15e-09,20 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.65e-12;4!DOID:1325;1.57e-07;7!DOID:3904;1.57e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.86e-12,4;DOID:1325,1.68e-07,7;DOID:3904,1.68e-07,7 | |||
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|ontology_enrichment_uberon_v019=UBERON:0007625;2.61e-105;11!UBERON:0000970;4.51e-83;20!UBERON:0002104;4.67e-79;21!UBERON:0000019;1.74e-73;19!UBERON:0000047;1.74e-73;19!UBERON:0004088;1.74e-73;19!UBERON:0010230;1.74e-73;19!UBERON:0000020;4.50e-72;23!UBERON:0001032;5.12e-69;24!UBERON:0004456;5.12e-69;24!UBERON:0001456;2.23e-66;21!UBERON:0000488;2.88e-47;4!UBERON:0001801;1.08e-40;14!UBERON:0000966;4.90e-38;5!UBERON:0005388;4.90e-38;5!UBERON:0001802;4.90e-38;5!UBERON:0001778;4.53e-36;3!UBERON:0001775;4.53e-36;3!UBERON:0001781;8.71e-36;3!UBERON:0001782;8.71e-36;3!UBERON:0010371;4.19e-35;31!UBERON:0002203;1.14e-31;6!UBERON:0001768;1.14e-31;6!UBERON:0002200;1.14e-31;6!UBERON:0010077;2.31e-27;4!UBERON:0005389;2.31e-27;4!UBERON:0000484;2.31e-27;4!UBERON:0000965;2.31e-27;4!UBERON:0001803;2.31e-27;4!UBERON:0001444;2.26e-19;48!UBERON:0000033;7.87e-18;50!UBERON:0006876;1.93e-17;11!UBERON:0007811;2.63e-13;52!UBERON:0000153;3.25e-13;54!UBERON:0002506;5.07e-13;1!UBERON:0001769;5.07e-13;1!UBERON:0001874;9.17e-13;1!UBERON:0000007;5.13e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.99e-105,11;UBERON:0000970,3.94e-79,21;UBERON:0002104,3.94e-79,21;UBERON:0000019,7.96e-70,20;UBERON:0000047,7.96e-70,20;UBERON:0010312,7.96e-70,20;UBERON:0004088,7.96e-70,20;UBERON:0010230,7.96e-70,20;UBERON:0003072,7.96e-70,20;UBERON:0004128,7.96e-70,20;UBERON:0003071,7.96e-70,20;UBERON:0000020,4.42e-69,24;UBERON:0001032,4.42e-69,24;UBERON:0004456,4.42e-69,24;UBERON:0001456,2.25e-63,22;UBERON:0000488,2.27e-47,4;UBERON:0005085,1.25e-44,31;UBERON:0001801,1.05e-40,14;UBERON:0001778,3.36e-36,3;UBERON:0001775,3.36e-36,3;UBERON:0001782,6.87e-36,3;UBERON:0005424,6.87e-36,3;UBERON:0000966,7.68e-32,6;UBERON:0005388,7.68e-32,6;UBERON:0001802,7.68e-32,6;UBERON:0002203,9.74e-32,6;UBERON:0001768,9.74e-32,6;UBERON:0002200,9.74e-32,6;UBERON:0003056,2.48e-30,61;UBERON:0001444,9.14e-28,49;UBERON:0010077,2.64e-27,4;UBERON:0005389,2.64e-27,4;UBERON:0000484,2.64e-27,4;UBERON:0002546,2.64e-27,4;UBERON:0000965,2.64e-27,4;UBERON:0001803,2.64e-27,4;UBERON:0003073,2.64e-27,4;UBERON:0005426,2.64e-27,4;UBERON:0001781,4.13e-27,4;UBERON:0000033,3.97e-24,56;UBERON:0003075,3.00e-22,82;UBERON:0007284,3.00e-22,82;UBERON:0000153,1.16e-21,62;UBERON:0007811,1.16e-21,62;UBERON:0002346,3.76e-21,86;UBERON:0006876,1.77e-17,11;UBERON:0010371,3.09e-17,104;UBERON:0000076,5.52e-14,8;UBERON:0010314,3.04e-13,132;UBERON:0002506,5.38e-13,1;UBERON:0001769,5.38e-13,1;UBERON:0001874,9.73e-13,1;UBERON:0001048,1.02e-10,160;UBERON:0004121,1.06e-09,171;UBERON:0000924,1.06e-09,171;UBERON:0006601,1.06e-09,171;UBERON:0000007,4.69e-07,2 | |||
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| ||
|short_description=p10@SIX3 | |||
}} | }} |
Latest revision as of 09:43, 17 September 2015
Short description: | p10@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | 196bp_to_NM_005413, uc002run.1_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 3.36e-36 | 3 |
ciliated epithelial cell | 3.36e-36 | 3 |
multi-ciliated epithelial cell | 3.36e-36 | 3 |
non-pigmented ciliary epithelial cell | 3.36e-36 | 3 |
retinal pigment epithelial cell | 6.87e-36 | 3 |
crystallin accumulating cell | 2.64e-27 | 4 |
vertebrate lens cell | 2.64e-27 | 4 |
lens epithelial cell | 2.64e-27 | 4 |
visual pigment cell | 4.13e-27 | 4 |
columnar/cuboidal epithelial cell | 8.45e-21 | 27 |
pigment cell | 8.98e-21 | 14 |
pigment cell (sensu Vertebrata) | 5.38e-13 | 1 |
iris pigment epithelial cell | 5.38e-13 | 1 |
neurecto-epithelial cell | 1.15e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.86e-12 | 4 |
bronchus cancer | 1.68e-07 | 7 |
bronchogenic carcinoma | 1.68e-07 | 7 |