FFCP PHASE1:Hg19::chr2:166150556..166150594,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:166150556..166150594,+
|short_description=p3@SCN2A
|description=CAGE_peak_3_at_SCN2A_5end
|association_with_transcript=2bp_to_ENST00000480032_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6326 | |EntrezGene=6326 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10588 | |HGNC=10588 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_ENST00000480032_5end | |||
|cluster_id=chr2:166150556..166150594,+ | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_3_at_SCN2A_5end | |||
|id=chr2:166150556..166150594,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.18e-12!180;CL:0000057!9.56e-07!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.07e-10;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.67e-34!82;UBERON:0000073!2.62e-33!94;UBERON:0001016!2.62e-33!94;UBERON:0005743!5.38e-33!86;UBERON:0001049!2.62e-31!57;UBERON:0005068!2.62e-31!57;UBERON:0006241!2.62e-31!57;UBERON:0007135!2.62e-31!57;UBERON:0004121!9.86e-29!169;UBERON:0002616!1.34e-28!59;UBERON:0000924!1.49e-28!173;UBERON:0006601!1.49e-28!173;UBERON:0003075!2.22e-28!86;UBERON:0007284!2.22e-28!86;UBERON:0002346!1.04e-27!90;UBERON:0000955!1.63e-27!69;UBERON:0006238!1.63e-27!69;UBERON:0002780!7.86e-25!41;UBERON:0001890!7.86e-25!41;UBERON:0006240!7.86e-25!41;UBERON:0002020!1.21e-24!34;UBERON:0003528!1.21e-24!34;UBERON:0001893!1.36e-24!34;UBERON:0000033!2.47e-24!123;UBERON:0001869!8.01e-24!32;UBERON:0002791!8.35e-24!33;UBERON:0003080!8.77e-24!42;UBERON:0000153!2.35e-22!129;UBERON:0007811!2.35e-22!129;UBERON:0003056!6.81e-21!61;UBERON:0000956!9.84e-19!25;UBERON:0000203!9.84e-19!25;UBERON:0002619!4.49e-18!22;UBERON:0001950!1.57e-16!20;UBERON:0007023!3.05e-13!115;UBERON:0000475!1.87e-12!365;UBERON:0000119!4.60e-09!312;UBERON:0000468!8.82e-09!659;UBERON:0000483!8.87e-09!309;UBERON:0003076!1.30e-08!15;UBERON:0003057!1.30e-08!15;UBERON:0002420!1.12e-07!9;UBERON:0007245!1.12e-07!9;UBERON:0010009!1.12e-07!9;UBERON:0010011!1.12e-07!9;UBERON:0000454!1.12e-07!9;UBERON:0000922!1.42e-07!612;UBERON:0002308!2.40e-07!9;UBERON:0000125!2.40e-07!9;UBERON:0000025!3.61e-07!194;UBERON:0004733!9.68e-07!12;UBERON:0002028!9.68e-07!12;UBERON:0007277!9.68e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.66e-37;32!UBERON:0001893;1.36e-35;34!UBERON:0003528;1.76e-35;34!UBERON:0002020;1.76e-35;34!UBERON:0002791;1.54e-34;32!UBERON:0002619;4.19e-34;22!UBERON:0000956;1.16e-31;25!UBERON:0000203;1.16e-31;25!UBERON:0001950;4.02e-31;20!UBERON:0002780;4.17e-28;41!UBERON:0001890;4.17e-28;41!UBERON:0000073;3.35e-27;53!UBERON:0002616;3.35e-27;53!UBERON:0001017;1.59e-20;75!UBERON:0000955;1.26e-18;68!UBERON:0001016;1.11e-17;83!UBERON:0002420;2.99e-11;9!UBERON:0007245;2.99e-11;9!UBERON:0010009;2.99e-11;9!UBERON:0010011;2.99e-11;9!UBERON:0000454;2.99e-11;9!UBERON:0000200;4.87e-11;6!UBERON:0000125;1.11e-10;9!UBERON:0002308;1.11e-10;9!UBERON:0001872;1.51e-09;5!UBERON:0004733;2.47e-09;12!UBERON:0002028;2.47e-09;12!UBERON:0001871;2.62e-09;6!UBERON:0002021;2.70e-09;5!UBERON:0000349;3.26e-09;5!UBERON:0002298;9.40e-09;6!UBERON:0004732;1.87e-08;13!UBERON:0009663;3.22e-08;7!UBERON:0011216;1.08e-07;132!UBERON:0000369;1.89e-07;4!UBERON:0002435;1.89e-07;4!UBERON:0000204;1.89e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.08e-51,56;UBERON:0005068,2.08e-51,56;UBERON:0006241,2.08e-51,56;UBERON:0007135,2.08e-51,56;UBERON:0001016,9.02e-49,89;UBERON:0001017,2.24e-48,81;UBERON:0000073,1.40e-47,53;UBERON:0002616,1.40e-47,53;UBERON:0000955,2.25e-43,68;UBERON:0006238,2.25e-43,68;UBERON:0003075,2.36e-41,82;UBERON:0007284,2.36e-41,82;UBERON:0001869,2.40e-41,32;UBERON:0003528,7.30e-41,34;UBERON:0002020,7.30e-41,34;UBERON:0001893,9.03e-41,34;UBERON:0002780,2.81e-39,41;UBERON:0001890,2.81e-39,41;UBERON:0003080,2.81e-39,41;UBERON:0006240,2.81e-39,41;UBERON:0002346,1.27e-38,86;UBERON:0002791,2.68e-38,32;UBERON:0002619,4.21e-34,22;UBERON:0010371,6.16e-33,104;UBERON:0000956,1.47e-31,25;UBERON:0000203,1.47e-31,25;UBERON:0001950,4.08e-31,20;UBERON:0004121,6.13e-31,171;UBERON:0000924,6.13e-31,171;UBERON:0006601,6.13e-31,171;UBERON:0003056,5.66e-29,61;UBERON:0010314,1.51e-23,132;UBERON:0007023,7.17e-17,114;UBERON:0011216,6.18e-16,223;UBERON:0003076,6.83e-13,15;UBERON:0003057,6.83e-13,15;UBERON:0000025,8.98e-12,192;UBERON:0002420,3.26e-11,9;UBERON:0007245,3.26e-11,9;UBERON:0010009,3.26e-11,9;UBERON:0010011,3.26e-11,9;UBERON:0000454,3.26e-11,9;UBERON:0000200,4.85e-11,6;UBERON:0000125,1.22e-10,9;UBERON:0002308,1.22e-10,9;UBERON:0001872,1.48e-09,5;UBERON:0004733,2.01e-09,12;UBERON:0002028,2.01e-09,12;UBERON:0007277,2.01e-09,12;UBERON:0004111,2.42e-09,240;UBERON:0002021,2.64e-09,5;UBERON:0001871,2.72e-09,6;UBERON:0000349,3.32e-09,5;UBERON:0002298,7.20e-09,6;UBERON:0004732,1.56e-08,13;UBERON:0000483,2.21e-08,306;UBERON:0009663,3.44e-08,7;UBERON:0000119,3.94e-08,309;UBERON:0000369,1.97e-07,4;UBERON:0002435,1.97e-07,4;UBERON:0000204,1.97e-07,4;UBERON:0010082,1.97e-07,4 | |||
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| ||
|short_description=p3@SCN2A | |||
}} | }} |
Latest revision as of 23:34, 17 September 2015
Short description: | p3@SCN2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCN2A_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 2bp_to_ENST00000480032_5end |
EntrezGene: | SCN2A |
HGNC: | 10588 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data