FFCP PHASE1:Hg19::chr4:657967..658013,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5158 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=8786 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_BC039412_5end | |||
|cluster_id=chr4:657967..658013,- | |||
|description=CAGE_peak_1_at_PDE6B_5end | |||
|id=chr4:657967..658013,- | |||
|ontology_enrichment_celltype=CL:0000542!2.03e-10!53;CL:0000051!2.03e-10!53;CL:0000838!2.85e-10!52;CL:0000791!7.66e-09!18;CL:0000789!7.66e-09!18;CL:0002420!7.66e-09!18;CL:0002419!7.66e-09!18;CL:0000790!7.66e-09!18;CL:0000738!3.57e-08!140;CL:0000625!1.12e-07!11;CL:0000988!1.20e-07!182;CL:0000037!5.14e-07!172;CL:0000566!5.14e-07!172;CL:0000084!5.42e-07!25;CL:0000827!5.42e-07!25;CL:0002087!7.84e-07!119;CL:0000236!9.06e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.25e-11;18!CL:0000789;4.25e-11;18!CL:0002419;4.25e-11;18!CL:0000084;1.39e-09;25!CL:0000625;2.11e-09;11!CL:0000542;1.24e-08;53!CL:0000236;1.55e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.49e-14,53;CL:0000051,5.49e-14,53;CL:0000838,8.54e-14,52;CL:0000791,2.75e-11,18;CL:0000789,2.75e-11,18;CL:0002420,2.75e-11,18;CL:0002419,2.75e-11,18;CL:0000790,2.75e-11,18;CL:0000084,1.09e-09,25;CL:0000827,1.09e-09,25;CL:0000625,1.71e-09,11;CL:0000236,1.35e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000790;4.25e-11;18!UBERON:0006601;5.05e-09;82!CL:0000051;1.24e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.03e-33!115;UBERON:0001049!5.27e-27!57;UBERON:0005068!5.27e-27!57;UBERON:0006241!5.27e-27!57;UBERON:0007135!5.27e-27!57;UBERON:0005743!4.24e-26!86;UBERON:0001017!5.86e-25!82;UBERON:0000073!1.71e-24!94;UBERON:0001016!1.71e-24!94;UBERON:0002346!6.68e-24!90;UBERON:0002780!1.28e-22!41;UBERON:0001890!1.28e-22!41;UBERON:0006240!1.28e-22!41;UBERON:0003075!2.15e-22!86;UBERON:0007284!2.15e-22!86;UBERON:0002616!1.08e-21!59;UBERON:0003080!1.52e-21!42;UBERON:0000955!9.00e-20!69;UBERON:0006238!9.00e-20!69;UBERON:0001893!1.12e-18!34;UBERON:0002020!1.44e-18!34;UBERON:0003528!1.44e-18!34;UBERON:0003056!3.07e-18!61;UBERON:0002791!3.49e-18!33;UBERON:0001869!9.99e-18!32;UBERON:0000956!3.81e-14!25;UBERON:0000203!3.81e-14!25;UBERON:0002619!4.33e-14!22;UBERON:0001950!4.58e-13!20;UBERON:0000153!4.96e-12!129;UBERON:0007811!4.96e-12!129;UBERON:0000924!9.55e-12!173;UBERON:0006601!9.55e-12!173;UBERON:0000033!9.46e-11!123;UBERON:0004121!1.03e-10!169;UBERON:0000178!9.82e-07!15;UBERON:0000179!9.82e-07!15;UBERON:0000463!9.82e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.15e-20;41!UBERON:0001890;2.15e-20;41!UBERON:0003528;1.89e-19;34!UBERON:0002020;1.89e-19;34!UBERON:0001893;2.41e-19;34!UBERON:0001869;2.75e-19;32!UBERON:0002791;3.87e-19;32!UBERON:0000073;7.77e-19;53!UBERON:0002616;7.77e-19;53!UBERON:0002619;8.10e-18;22!UBERON:0000956;6.95e-17;25!UBERON:0000203;6.95e-17;25!UBERON:0001950;1.54e-16;20!UBERON:0000955;1.23e-12;68!UBERON:0001017;4.42e-12;75!UBERON:0001016;1.52e-11;83!UBERON:0007023;3.24e-10;114!UBERON:0000178;5.46e-08;15!UBERON:0000179;5.46e-08;15!UBERON:0000463;5.46e-08;15!UBERON:0000922;1.78e-07;49!UBERON:0000125;4.56e-07;9!UBERON:0002308;4.56e-07;9!UBERON:0002420;5.12e-07;9!UBERON:0007245;5.12e-07;9!UBERON:0010009;5.12e-07;9!UBERON:0010011;5.12e-07;9!UBERON:0000454;5.12e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.51e-36,114;UBERON:0001049,1.35e-33,56;UBERON:0005068,1.35e-33,56;UBERON:0006241,1.35e-33,56;UBERON:0007135,1.35e-33,56;UBERON:0001017,4.37e-32,81;UBERON:0000073,1.11e-31,53;UBERON:0002616,1.11e-31,53;UBERON:0001016,4.38e-31,89;UBERON:0002780,8.28e-28,41;UBERON:0001890,8.28e-28,41;UBERON:0003080,8.28e-28,41;UBERON:0006240,8.28e-28,41;UBERON:0002346,6.00e-27,86;UBERON:0000955,4.22e-26,68;UBERON:0006238,4.22e-26,68;UBERON:0003075,4.85e-25,82;UBERON:0007284,4.85e-25,82;UBERON:0001893,1.05e-22,34;UBERON:0003528,1.44e-22,34;UBERON:0002020,1.44e-22,34;UBERON:0001869,1.79e-21,32;UBERON:0002791,2.41e-21,32;UBERON:0003056,9.27e-21,61;UBERON:0002619,8.30e-18,22;UBERON:0000956,7.76e-17,25;UBERON:0000203,7.76e-17,25;UBERON:0010371,1.24e-16,104;UBERON:0001950,1.77e-16,20;UBERON:0004121,1.03e-14,171;UBERON:0000924,1.03e-14,171;UBERON:0006601,1.03e-14,171;UBERON:0010314,5.45e-12,132;UBERON:0011216,3.35e-09,223;UBERON:0000178,2.81e-08,15;UBERON:0000179,2.81e-08,15;UBERON:0000463,2.81e-08,15;UBERON:0003076,3.43e-07,15;UBERON:0003057,3.43e-07,15;UBERON:0000125,3.50e-07,9;UBERON:0002308,3.50e-07,9;UBERON:0002420,3.59e-07,9;UBERON:0007245,3.59e-07,9;UBERON:0010009,3.59e-07,9;UBERON:0010011,3.59e-07,9;UBERON:0000454,3.59e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.791300934685361,0.123766352960047,0,0,0,0,0,0.123121058076788,0.408001382488506,1.25381888591235,1.14494394852423,0.958120975510189,1.63205431473244,0.152826811495903,0.164201178899891,0.314843125254717,0.786728553697808,1.91914699048606,0.77408061658038,0,0,0,0,5.11809236954717,8.22081230137572,0,0.601633342410425,1.51907609501096,3.13481663935894,1.6194683300949,4.37878464978117,0.726991193897824,0.377875943688809,0.242584061187816,0,0.822335776043652,0.309706370895104,0.28769239232215,0.768482119587302,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0.329851300186716,0.598390972864896,0.426224750532694,0,0,0,0.251248665256743,0.521482918420201,0.217188844705117,1.21079900526674,0,0.316462387440884,0.633765858935825,1.4882300997553,1.04829322754188,0.786300418025466,1.80212271409808,1.12507910687956,1.14005097496499,1.79025009479181,0.91332076882317,8.79981222306614,8.7382177801941,8.89509253863555,2.13365111283254,6.00593980554019,12.6445536789986,9.25462821898807,10.494591299889,3.98449078376614,5.28513470433845,3.44045905312706,7.93027971474155,3.36305137788922,8.95505888235262,2.55722701147983,2.75107533924415,1.64481199199607,5.01559486172034,6.19252306603822,11.8361951433683,7.79306913631645,3.45372416344038,5.30290633454707,9.96902525626295,6.49929273036037,5.89220070738106,5.72261129263464,3.12432018746985,3.31620021343018,2.31842468588042,6.67289534229272,11.2367147797679,7.31748666634838,3.73920830901968,6.89796888483458,8.59068613706575,5.56643322442906,11.4683549156675,5.85975108470777,13.3063286222772,6.77588035849977,7.29523683580185,6.24653632761729,6.86654030927649,12.3169199538157,4.03213486449465,1.60464117470104,6.95157138637435,0,0,0.12786256184353,0,0,0.144846518960824,0,0,2.17430079477356,1.10864698731282,1.75669571386252,4.12584087817795,0,0.370784442784429,0.324547393654683,0.522389211897802,0.797747763113191,7.87019060207628,7.43593384014166,8.54352253057999,0,0,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0.24406205754817,0,0,0.625098097988558,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0,0.468642863667593,0,0,0,0,0.323745888736263,0.140450806702248,0,0.122834317311768,0,1.18800285728205,0.247266929278557,0.910161361938026,0,0,0.375355559615893,0,0,0,0.150238058906597,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,5.61079048196139,6.22889911110981,5.34492137199785,4.66474747569167,3.78481276313443,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,1.2347220339942,0,0,0.982827216677626,0.590789906681404,0.441463099414651,0,0.514703430895577,0,0,0,0.0925884451585296,0,0,1.44331342025273,4.28942498407784,0.234817388471643,0.144366447761074,0,0.951270761172991,0,0,1.96973604869918,0.468008530278475,0.743155811443641,0,0,0,0,0,0,0.985326475791887,5.54705134283324,2.90259361757081,3.17063897517315,2.39860623510122,0.126995788584338,0,0,3.4214489204541,0,0.300343057843917,0,0.112131084345361,0,0,0,0,0,0,0,0.257207374262142,0,0,0.142977993658148,0,0.823240336780769,0,0,0,0.904318131178758,0.871533458600294,1.29964888536674,0,2.00902836572851,4.21667878966063,0.239624855491583,0,0,0,0,0,0,2.95546140302891,2.15627574859517,3.7219480521127,3.04913549066956,10.4111883086097,3.86644406388848,6.70065061337395,2.55175500661265,0,0,0.414415513436035,0.12269149171914,0.500170521059677,0,0.207970861530807,0.713715955188647,0.157702415033935,0.468565659970853,0,0,0,0,0,0.0868836144680828,0.391602314925481,0.343143423810856,4.54889657470352,1.72571360654893,2.881644060693,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0.114814448164607,0,0.131124414959424,2.25599806453706,1.30926073077505,0.784349769176855,1.46139224653261,2.32213583564327,0,0.170093705276516,0.215915916102139,3.08454505380579,0.812839312631559,2.50844886927427,0.509752546090077,0.831076008928724,0,0,0.261435451024901,2.3080511260475,0.984043937099117,0.976135183992909,0.103041011647722,0,0,0,0,0,0,0,0,0.137836572484531,0.214840489736547,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0.255897791311334,1.28381696410176,0,0,0.179872457583315,0.54907405947211,0.353437207037059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0.443430153536676,0,4.56702848308952,6.117097657139,3.98753031021914,5.71756261098694,5.75907182320672,1.94541993357815,3.24018862342869,6.34500141035416,0,0,0,1.30062222588003,2.01976898167023,8.89273041855176,2.23196781820351,2.3949524571938,3.25559129225023,1.48171507906718,0.649243880549111,7.01992945283647,1.14117339516596,0,0,1.69291777801603,0,0,0,0,0,0,0,0,0,1.23087398947712,0.540911356951966,0,0,0,0.73254089635947,3.03401304373784,0,0,0.47748896947538,1.18785872333055,0.921482106297696,2.98244294329889,8.44016498463076,0,0,8.44501632511974,1.9924798825107,2.76283915531148,4.78672220923124,0,2.8309505256046,0,0,0,0,0.887790650732402,2.3948309234694,0,6.78532922266653,4.36010061360701,21.9575177801314,0,0,0,0,0.762760950878299,0,0,2.33283690706603,2.2571249341328,5.31444831488303,12.5420296170424,4.5774520895125,3.64911557773041,4.13766666534966,2.63262476584767,0,0,1.61595542857974,0,0,0,6.08425282763245,0,0,0,0,0.784901281975124,0.831058409500782,0,0,0,0,0.953619473882272,0,0,0,0,1.99052386215701,0.619202951523374,3.05515072466813,2.07564790076435,1.97702302314405,2.61054873763638,6.20090423422229,0,3.27970224015475,0,0,0,4.3404284313433,3.62972148145992,18.9765112210904,3.79119477770928,0,0,0,0,0.313932918407225,0,0.569219092059585,0,0,0,0,11.357233435732,0,0,0,0,1.55182426381471,0,4.51961481561065,0,0,9.11675461764653,2.15106521008283,0,3.41524791582964,0,0,0,4.63306494227304,0,0.372757606696298,0,0,0,0,0,3.60252173225874,3.9702559878678,7.66479528401834,0.429765441419957,4.20619766846903,2.51354161145029,1.83328339209347,0,1.39775300349294,0.429226048136571,0.223171457441873,2.5529719544956,0,0,0.0787831823072236,0,0,0,0,3.97614844904652,8.30840777280611,3.3758161177654,3.57602535152808,0.83088067605837,0.449947783103001,0,7.77594325222716,0,0.551639951094387,5.4552771660398,0,0,0,2.85878130549347,0,0,0,0,0,0,1.23138781124008,0,0,0,0,3.74920573448497,6.21493228190643,0,0.704815022316672,2.24253566392159,3.93010762749165,2.48543433208317,3.47316215268366,0,0,0,0,0,0,0,0.314108192500469,6.2024772597689,4.02686674176478,9.13893794157449,5.16068276121064,8.98525317448503,6.7685079206108,14.388258033368,0,0,0,0,5.62001886968258,3.04334160082733,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0,0,0,0,0.300515217994437,0,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0.214441591374926,0.521988583930423,0,0,0.734210113519403,0,0.617602894321944,0.657852148736121,0.176689145945881,0.771656153083659,1.52048196587765,0.256241518587947,0,0,10.9224164559867,0.974301544196942,0.930053882193542,3.27130788511688,0,0,0,0,0.640150378164845,0,0,0,0,0,9.08050036255927,3.98951802167723,3.14531883711793,4.04075661310451,1.86705782949428,15.7305440875245,3.71807292777007,0,0,1.49837315502381,0.80057074828547,0,1.2249819094128,7.00098553551409,1.41696576325585,9.89729926154338,3.28186182785208,18.4012338241854,7.05403975135022,9.68853873791107,0,0,0,0,0,0,0,0,2.18109952212846,0.20170506870352,2.34454203369928,0,0,0,5.13285643099799,4.68646859168308,9.92096623205684,6.65866007036022,20.2380679336741,0,2.48105589194647,1.75871244359621,0.127762427639595,5.89272019466115,15.4690512220659,9.10448406354947,10.0171364194571,0.620916591138472,1.61327582578091,0,4.2820931775404,6.05109516778212,0.354581522651905,0,2.27629969266491,5.49904564706007,0,4.56579360254748,0,0,9.86376309637857,1.89616334079272,0,0,0.801711364730253,0.207216164163037,0.51215543128185,0,2.15113679410139,0,0,1.69354820076372,0.22910686854405,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0.485710993059139,0,0,7.01628535587655,0.22589216407792,2.19881033490858,0.905777061400041,0.926089897295336,3.49695296806332,0,1.47088993052343,0,4.51509474364374,6.53502080719589,3.8039015482506,0,1.87967835959707,3.99638905436179,0.399764623699716,0,0,0,1.46067277649303,3.66983426723633,3.87016874508919,0,5.30333623489135,13.0905207102113,6.87734892670021,0,0,0,0,0.655593431782173,1.52038201213724,0.407955318967927,1.06886962106224,0.551369397209069,0,2.57647573942014,1.60778478093707,3.31667775783512,6.5162787392994,1.0661699095049,4.76128862927481,4.77957932786445,9.24913243008283,0,2.92776928079559,4.24446096812261,0.653150243690884,1.36893320434112,4.3105313929336,1.43444410785353,2.32862249582209,0,0,0,0,0,1.58913877437726,3.25516942652591,0,4.83057104618463,0 | |||
|short_description=p1@PDE6B | |||
}} |
Latest revision as of 05:41, 18 September 2015
Short description: | p1@PDE6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDE6B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_BC039412_5end |
EntrezGene: | PDE6B |
HGNC: | 8786 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.49e-14 | 53 |
common lymphoid progenitor | 5.49e-14 | 53 |
lymphoid lineage restricted progenitor cell | 8.54e-14 | 52 |
mature alpha-beta T cell | 2.75e-11 | 18 |
alpha-beta T cell | 2.75e-11 | 18 |
immature T cell | 2.75e-11 | 18 |
mature T cell | 2.75e-11 | 18 |
immature alpha-beta T cell | 2.75e-11 | 18 |
T cell | 1.09e-09 | 25 |
pro-T cell | 1.09e-09 | 25 |
CD8-positive, alpha-beta T cell | 1.71e-09 | 11 |
B cell | 1.35e-08 | 14 |