FFCP PHASE1:Hg19::chr7:100808320..100808338,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7425 | |EntrezGene=7425 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12684 | |HGNC=12684 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=56bp_to_ENST00000445482_5end | |association_with_transcript=56bp_to_ENST00000445482_5end | ||
|cluster_id=chr7:100808320..100808338,- | |||
|coexpression_cluster_id=C4634 | |||
|description=CAGE_peak_3_at_VGF_5end | |description=CAGE_peak_3_at_VGF_5end | ||
|id=chr7:100808320..100808338,- | |id=chr7:100808320..100808338,- | ||
|ontology_enrichment_celltype=CL:0000540!2.11e-13!6;CL:0000031!2.11e-13!6;CL:0000404!2.11e-13!6;CL:0002322!1.00e-11!5;CL:0000047!7.60e-10!8 | |ontology_enrichment_celltype=CL:0000540!2.11e-13!6;CL:0000031!2.11e-13!6;CL:0000404!2.11e-13!6;CL:0002322!1.00e-11!5;CL:0000047!7.60e-10!8 | ||
|ontology_enrichment_celltype_v019=CL:0000540;2.11e-08;6!CL:0000404;2.11e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.90e-08,6;CL:0000031,1.90e-08,6;CL:0000404,1.90e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.11e-09;82!CL:0000031;2.11e-08;6!UBERON:0006222;4.96e-07;1 | |||
|ontology_enrichment_disease=DOID:3095!9.69e-08!22;DOID:2994!9.69e-08!22 | |ontology_enrichment_disease=DOID:3095!9.69e-08!22;DOID:2994!9.69e-08!22 | ||
|ontology_enrichment_disease_v019=DOID:1909;2.08e-12;2!DOID:3371;3.13e-07;1!DOID:4549;3.13e-07;1!DOID:5861;3.13e-07;1!DOID:6496;3.13e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.40e-12,2;DOID:3371,3.13e-07,1;DOID:4549,3.13e-07,1;DOID:5861,3.13e-07,1;DOID:6496,3.13e-07,1 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001869;1.23e-49;32!UBERON:0001893;8.38e-47;34!UBERON:0002791;4.62e-45;32!UBERON:0003528;2.02e-44;34!UBERON:0002020;2.02e-44;34!UBERON:0002619;8.08e-44;22!UBERON:0001950;2.61e-41;20!UBERON:0000956;2.01e-38;25!UBERON:0000203;2.01e-38;25!UBERON:0002780;1.71e-31;41!UBERON:0001890;1.71e-31;41!UBERON:0000200;1.34e-22;6!UBERON:0002420;5.23e-22;9!UBERON:0007245;5.23e-22;9!UBERON:0010009;5.23e-22;9!UBERON:0010011;5.23e-22;9!UBERON:0000454;5.23e-22;9!UBERON:0001871;1.17e-19;6!UBERON:0000073;2.13e-19;53!UBERON:0002616;2.13e-19;53!UBERON:0000955;1.27e-18;68!UBERON:0000349;4.41e-18;5!UBERON:0001017;3.16e-16;75!UBERON:0000369;1.72e-13;4!UBERON:0002435;1.72e-13;4!UBERON:0000204;1.72e-13;4!UBERON:0009663;3.09e-13;7!UBERON:0001876;5.37e-12;2!UBERON:0002771;5.83e-12;2!UBERON:0001016;7.73e-11;83!UBERON:0000125;2.58e-10;9!UBERON:0002308;2.58e-10;9!UBERON:0001872;3.19e-10;5!UBERON:0005383;9.52e-09;3!UBERON:0005382;9.52e-09;3!UBERON:0007023;2.13e-08;114!UBERON:0001870;4.31e-08;3!UBERON:0001874;3.32e-07;1!UBERON:0002022;4.96e-07;1!UBERON:0002581;5.89e-07;1!UBERON:0003112;5.89e-07;1!UBERON:0011158;5.89e-07;1!UBERON:0003128;5.89e-07;1!UBERON:0001703;5.89e-07;1!UBERON:0002241;5.89e-07;1!UBERON:0002902;8.04e-07;1!UBERON:0001882;8.04e-07;1!UBERON:0009899;8.04e-07;1!UBERON:0007190;8.04e-07;1!UBERON:0005403;8.04e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,2.50e-56,32;UBERON:0001893,7.17e-53,34;UBERON:0002791,2.14e-50,32;UBERON:0002780,2.34e-48,41;UBERON:0001890,2.34e-48,41;UBERON:0003080,2.34e-48,41;UBERON:0006240,2.34e-48,41;UBERON:0003528,2.73e-47,34;UBERON:0002020,2.73e-47,34;UBERON:0002619,7.23e-44,22;UBERON:0001950,2.29e-41,20;UBERON:0001017,3.15e-39,81;UBERON:0000956,1.83e-38,25;UBERON:0000203,1.83e-38,25;UBERON:0000073,1.25e-36,53;UBERON:0002616,1.25e-36,53;UBERON:0001016,7.48e-35,89;UBERON:0001049,1.82e-34,56;UBERON:0005068,1.82e-34,56;UBERON:0006241,1.82e-34,56;UBERON:0007135,1.82e-34,56;UBERON:0000955,2.02e-33,68;UBERON:0006238,2.02e-33,68;UBERON:0003056,2.49e-31,61;UBERON:0007023,9.83e-23,114;UBERON:0000200,1.38e-22,6;UBERON:0003075,2.78e-22,82;UBERON:0007284,2.78e-22,82;UBERON:0002420,5.15e-22,9;UBERON:0007245,5.15e-22,9;UBERON:0010009,5.15e-22,9;UBERON:0010011,5.15e-22,9;UBERON:0000454,5.15e-22,9;UBERON:0002346,4.71e-21,86;UBERON:0010371,9.29e-21,104;UBERON:0001871,1.66e-19,6;UBERON:0004121,5.26e-19,171;UBERON:0000924,5.26e-19,171;UBERON:0006601,5.26e-19,171;UBERON:0000349,4.51e-18,5;UBERON:0010314,9.36e-14,132;UBERON:0000369,1.52e-13,4;UBERON:0002435,1.52e-13,4;UBERON:0000204,1.52e-13,4;UBERON:0010082,1.52e-13,4;UBERON:0009663,2.82e-13,7;UBERON:0011216,5.58e-12,223;UBERON:0001876,6.17e-12,2;UBERON:0002771,8.12e-12,2;UBERON:0001872,2.39e-10,5;UBERON:0000125,2.40e-10,9;UBERON:0002308,2.40e-10,9;UBERON:0005383,9.35e-09,3;UBERON:0005382,9.35e-09,3;UBERON:0001870,3.41e-08,3;UBERON:0001874,3.32e-07,1;UBERON:0000025,3.95e-07,192;UBERON:0002022,5.26e-07,1;UBERON:0002581,5.57e-07,1;UBERON:0003112,6.24e-07,1;UBERON:0011158,6.24e-07,1;UBERON:0003128,6.24e-07,1;UBERON:0001703,6.24e-07,1;UBERON:0002241,6.24e-07,1;UBERON:0004761,6.24e-07,1;UBERON:0009617,6.24e-07,1;UBERON:0001882,6.99e-07,1;UBERON:0005403,6.99e-07,1;UBERON:0007190,8.27e-07,1;UBERON:0002902,8.75e-07,1;UBERON:0009899,8.75e-07,1 | |||
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|short_description=p3@VGF | |short_description=p3@VGF | ||
}} | }} |
Latest revision as of 17:11, 24 September 2015
Short description: | p3@VGF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VGF_5end |
Coexpression cluster: | C4634_melanoma_occipital_amygdala_temporal_postcentral_brain_insula |
Association with transcript: | 56bp_to_ENST00000445482_5end |
EntrezGene: | VGF |
HGNC: | 12684 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.90e-08 | 6 |
neuroblast | 1.90e-08 | 6 |
electrically signaling cell | 1.90e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.40e-12 | 2 |
chondrosarcoma | 3.13e-07 | 1 |
extraosseous chondrosarcoma | 3.13e-07 | 1 |
myxoid chondrosarcoma | 3.13e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 3.13e-07 | 1 |