FFCP PHASE1:Hg19::chr7:107968952..107968990,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:107968952..107968990,- to FFCP PHASE1:Hg19::chr7:107968952..107968990,-: NSchange) |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4897 | |EntrezGene=4897 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7994 | |HGNC=7994 | ||
|TSSclassifier=strong | |||
|UniProt=C9JF43 | |UniProt=C9JF43 | ||
|association_with_transcript=-20bp_to_ENST00000442580_5end | |||
|cluster_id=chr7:107968952..107968990,- | |||
|coexpression_cluster_id=C276 | |||
|description=CAGE_peak_5_at_NRCAM_5end | |||
|id=chr7:107968952..107968990,- | |||
|ontology_enrichment_celltype=CL:0002319!4.84e-11!25;CL:0000128!6.51e-11!7;CL:0000126!6.51e-11!7;CL:0000127!6.51e-11!7;CL:0002453!6.51e-11!7;CL:0000095!2.52e-08!17;CL:0000123!2.52e-08!17;CL:0000243!7.30e-08!15;CL:0000125!7.30e-08!15;CL:0000030!7.30e-08!15;CL:0000339!7.30e-08!15;CL:0002605!1.70e-07!3;CL:0000133!2.29e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000128;1.88e-20;7!CL:0000126;1.88e-20;7!CL:0000127;1.88e-20;7!CL:0002605;2.64e-13;3!CL:0002319;1.26e-12;25!CL:0000047;9.92e-09;2!CL:0000243;5.25e-08;15!CL:0000125;5.25e-08;15!CL:0002322;3.83e-07;5!CL:0000095;4.34e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,1.66e-20,7;CL:0000126,1.66e-20,7;CL:0000127,1.66e-20,7;CL:0002453,1.66e-20,7;CL:0002605,2.60e-13,3;CL:0002319,9.70e-13,25;CL:0000133,3.99e-09,59;CL:0000243,5.00e-08,15;CL:0000125,5.00e-08,15;CL:0000030,5.00e-08,15;CL:0000339,5.00e-08,15;CL:0000047,7.91e-08,8;CL:0000095,4.16e-07,17;CL:0000123,4.16e-07,17;CL:0000221,5.24e-07,72;CL:0000333,5.24e-07,41;CL:0002322,7.82e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.28e-13;3!CL:0000339;5.25e-08;15!CL:0000133;5.47e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.04e-67!57;UBERON:0005068!2.04e-67!57;UBERON:0006241!2.04e-67!57;UBERON:0007135!2.04e-67!57;UBERON:0001017!1.71e-62!82;UBERON:0005743!2.47e-61!86;UBERON:0002616!1.93e-58!59;UBERON:0000073!4.75e-58!94;UBERON:0001016!4.75e-58!94;UBERON:0000955!7.37e-57!69;UBERON:0006238!7.37e-57!69;UBERON:0003075!4.43e-52!86;UBERON:0007284!4.43e-52!86;UBERON:0002780!3.41e-49!41;UBERON:0001890!3.41e-49!41;UBERON:0006240!3.41e-49!41;UBERON:0002346!4.93e-49!90;UBERON:0003080!8.96e-48!42;UBERON:0003056!5.00e-40!61;UBERON:0001893!3.88e-38!34;UBERON:0002020!1.17e-37!34;UBERON:0003528!1.17e-37!34;UBERON:0002791!1.54e-36!33;UBERON:0001869!8.40e-35!32;UBERON:0000033!3.09e-34!123;UBERON:0000153!6.96e-32!129;UBERON:0007811!6.96e-32!129;UBERON:0007023!5.72e-31!115;UBERON:0000956!3.73e-30!25;UBERON:0000203!3.73e-30!25;UBERON:0004121!2.11e-29!169;UBERON:0000924!2.62e-28!173;UBERON:0006601!2.62e-28!173;UBERON:0002619!1.19e-24!22;UBERON:0001950!1.36e-21!20;UBERON:0003076!5.59e-20!15;UBERON:0003057!5.59e-20!15;UBERON:0004733!4.29e-18!12;UBERON:0002028!4.29e-18!12;UBERON:0007277!4.29e-18!12;UBERON:0004732!1.78e-16!13;UBERON:0002680!4.63e-13!9;UBERON:0001895!4.63e-13!9;UBERON:0010092!4.63e-13!9;UBERON:0000025!7.61e-13!194;UBERON:0001894!1.43e-12!7;UBERON:0006222!1.43e-12!7;UBERON:0000200!3.38e-11!6;UBERON:0002298!7.84e-11!8;UBERON:0001871!1.07e-10!7;UBERON:0004111!6.70e-10!241;UBERON:0000349!2.06e-09!5;UBERON:0002420!3.27e-09!9;UBERON:0007245!3.27e-09!9;UBERON:0010009!3.27e-09!9;UBERON:0010011!3.27e-09!9;UBERON:0000454!3.27e-09!9;UBERON:0002308!5.71e-09!9;UBERON:0000125!5.71e-09!9;UBERON:0002037!5.82e-09!6;UBERON:0006215!5.82e-09!6;UBERON:0000064!2.25e-08!219;UBERON:0000483!6.08e-08!309;UBERON:0000119!1.00e-07!312;UBERON:0000477!1.05e-07!286;UBERON:0003296!1.08e-07!4;UBERON:0010133!1.08e-07!4;UBERON:0001896!9.36e-07!3;UBERON:0005290!9.36e-07!3;UBERON:0010096!9.36e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.96e-24;53!UBERON:0002616;2.96e-24;53!UBERON:0004733;2.02e-19;12!UBERON:0002028;2.02e-19;12!UBERON:0004732;7.97e-18;13!UBERON:0002780;3.73e-17;41!UBERON:0001890;3.73e-17;41!UBERON:0002037;1.42e-16;6!UBERON:0001893;2.13e-16;34!UBERON:0000956;1.18e-15;25!UBERON:0000203;1.18e-15;25!UBERON:0000955;1.60e-15;68!UBERON:0001017;1.84e-15;75!UBERON:0001016;7.91e-14;83!UBERON:0001869;1.33e-12;32!UBERON:0002791;1.39e-12;32!UBERON:0003528;6.68e-12;34!UBERON:0002020;6.68e-12;34!UBERON:0001896;1.31e-11;3!UBERON:0005290;1.31e-11;3!UBERON:0002680;6.07e-11;9!UBERON:0001895;6.07e-11;9!UBERON:0000200;5.64e-10;6!UBERON:0002619;3.99e-09;22!UBERON:0002784;4.92e-09;4!UBERON:0001894;7.05e-09;7!UBERON:0001905;1.38e-08;2!UBERON:0002757;1.38e-08;2!UBERON:0010134;1.38e-08;2!UBERON:0005408;1.38e-08;2!UBERON:0001899;1.38e-08;2!UBERON:0002771;2.68e-08;2!UBERON:0001950;8.17e-08;20!UBERON:0007023;6.69e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.05e-45,56;UBERON:0005068,1.05e-45,56;UBERON:0006241,1.05e-45,56;UBERON:0007135,1.05e-45,56;UBERON:0001017,3.05e-45,81;UBERON:0000073,2.64e-41,53;UBERON:0002616,2.64e-41,53;UBERON:0001016,5.22e-40,89;UBERON:0000955,7.05e-36,68;UBERON:0006238,7.05e-36,68;UBERON:0003075,3.28e-34,82;UBERON:0007284,3.28e-34,82;UBERON:0002346,2.70e-32,86;UBERON:0010371,1.73e-25,104;UBERON:0002780,9.10e-25,41;UBERON:0001890,9.10e-25,41;UBERON:0003080,9.10e-25,41;UBERON:0006240,9.10e-25,41;UBERON:0003076,3.38e-24,15;UBERON:0003057,3.38e-24,15;UBERON:0010314,4.38e-20,132;UBERON:0004121,4.38e-20,171;UBERON:0000924,4.38e-20,171;UBERON:0006601,4.38e-20,171;UBERON:0004733,1.26e-19,12;UBERON:0002028,1.26e-19,12;UBERON:0007277,1.26e-19,12;UBERON:0003056,1.53e-19,61;UBERON:0001893,4.26e-18,34;UBERON:0004732,5.18e-18,13;UBERON:0011216,8.84e-17,223;UBERON:0002037,1.26e-16,6;UBERON:0006215,1.26e-16,6;UBERON:0007023,5.63e-16,114;UBERON:0000956,1.26e-15,25;UBERON:0000203,1.26e-15,25;UBERON:0002791,3.71e-14,32;UBERON:0001869,4.44e-14,32;UBERON:0003528,3.36e-13,34;UBERON:0002020,3.36e-13,34;UBERON:0001896,7.50e-12,3;UBERON:0005290,7.50e-12,3;UBERON:0010096,7.50e-12,3;UBERON:0002680,5.61e-11,9;UBERON:0001895,5.61e-11,9;UBERON:0010092,5.61e-11,9;UBERON:0000025,1.19e-10,192;UBERON:0000200,7.20e-10,6;UBERON:0002619,4.20e-09,22;UBERON:0002784,8.72e-09,4;UBERON:0001894,1.10e-08,7;UBERON:0006222,1.10e-08,7;UBERON:0002771,1.91e-08,2;UBERON:0001905,2.23e-08,2;UBERON:0002757,2.23e-08,2;UBERON:0010134,2.23e-08,2;UBERON:0005408,2.23e-08,2;UBERON:0001899,2.23e-08,2;UBERON:0004111,6.47e-08,240;UBERON:0001950,8.96e-08,20 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09305798730539,0,1.56727360739044,19.7502831120429,20.120540485714,9.91786852798942,0.0764134057479513,0,0,0,0,0,0,0,0,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567208902984407,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,1.04574548582567,1.0366105501537,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0859452328317,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.720599767084807,0,0,0,1.17217447210047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.08189248444927,1.30139853857622,0,1.34013012267479,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.844016498463076,0,0,0,0,0,0,12.6813166302672,0,0,0,0,0,0.0986434056369336,0,0,0,1.29875337426592,0,0,0,0,0,0,0,0,0,0,0,0.60298219312704,6.10326945268333,16.6974682496149,7.38869047383869,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40728582029699,0.141353071433941,0,0,0,0,0,0,0,1.48282492557489,0,2.34264445725339,0,0,0,1.57833761139756,0,0.30607276163049,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,7.00540296419651,0,0,1.2029051231617,0,0,0,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0.795229689809303,1.49823746722733,0,0,0,0,0,0.789744236554321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,22.3016816675333,0.886068179966986,1.70836770862748,1.001527445652,1.14681839138014,1.66393577305278,1.8628920882415,0.276697269872462,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,98.1405016191836,0,0,1.24432592536558,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0.861074898304078,0,0,0,0,0,0,0,0.54604819096007,0,0,0,0,0,0,0,0,0,0.963438376446893,2.8339315265117,0.159633859057151,0,0,0.899044282034833,1.29180516505481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14813893851271,2.34323429584154,0.413373593002368,1.20490039368423,0,0,0,0,0,1.07140367175657,2.01770233331294,0.606965604236632,0.227662191351298,0,0.115233987555779,0,0.40781839786099,0.72350050919134,0,0,0.078493092850514,0.942693539496011,0.280272163313789,0,0,0,1.57248397188644,0.47404083519818,0.348724276104376,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0,3.57937381752935,0,0,0,0,0,0,0,0.198950775161368,0,56.585987101519,3.62803705259916,0,0,0.874238242015829,0,0,0,2.1593931382644,2.97046400327086,0,0,0,0,1.49911733887393,0,0,0,0,0,1.57673541466596,0,0.611923411718232,0,2.645134202577,0,0,0,0.126166424835079,19.6678029534652,0,0.305966489225945,3.20660886318673,0,0,0,0,0.829169439458779,1.13776295448085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09305798730539,0,1.56727360739044,19.7502831120429,20.120540485714,9.91786852798942,0.0764134057479513,0,0,0,0,0,0,0,0,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567208902984407,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,1.04574548582567,1.0366105501537,1.00928340350251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0859452328317,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.720599767084807,0,0,0,1.17217447210047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.08189248444927,1.30139853857622,0,1.34013012267479,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.844016498463076,0,0,0,0,0,0,12.6813166302672,0,0,0,0,0,0.0986434056369336,0,0,0,1.29875337426592,0,0,0,0,0,0,0,0,0,0,0,0.60298219312704,6.10326945268333,16.6974682496149,7.38869047383869,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40728582029699,0.141353071433941,0,0,0,0,0,0,0,1.48282492557489,0,2.34264445725339,0,0,0,1.57833761139756,0,0.30607276163049,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,7.00540296419651,0,0,1.2029051231617,0,0,0,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0.795229689809303,1.49823746722733,0,0,0,0,0,0.789744236554321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,22.3016816675333,0.886068179966986,1.70836770862748,1.001527445652,1.14681839138014,1.66393577305278,1.8628920882415,0.276697269872462,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,98.1405016191836,0,0,1.24432592536558,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0.861074898304078,0,0,0,0,0,0,0,0.54604819096007,0,0,0,0,0,0,0,0,0,0.963438376446893,2.8339315265117,0.159633859057151,0,0,0.899044282034833,1.29180516505481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14813893851271,2.34323429584154,0.413373593002368,1.20490039368423,0,0,0,0,0,1.07140367175657,2.01770233331294,0.606965604236632,0.227662191351298,0,0.115233987555779,0,0.40781839786099,0.72350050919134,0,0,0.078493092850514,0.942693539496011,0.280272163313789,0,0,0,1.57248397188644,0.47404083519818,0.348724276104376,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0,3.57937381752935,0,0,0,0,0,0,0,0.198950775161368,0,56.585987101519,3.62803705259916,0,0,0.874238242015829,0,0,0,2.1593931382644,2.97046400327086,0,0,0,0,1.49911733887393,0,0,0,0,0,1.57673541466596,0,0.611923411718232,0,2.645134202577,0,0,0,0.126166424835079,19.6678029534652,0,0.305966489225945,3.20660886318673,0,0,0,0,0.829169439458779,1.13776295448085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p5@NRCAM | |||
}} | }} |
Latest revision as of 02:47, 25 September 2015
Short description: | p5@NRCAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_NRCAM_5end |
Coexpression cluster: | C276_mesothelioma_kidney_renal_small_clear_cerebellum_Renal |
Association with transcript: | -20bp_to_ENST00000442580_5end |
EntrezGene: | NRCAM |
HGNC: | 7994 |
UniProt: | C9JF43 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 1.66e-20 | 7 |
macroglial cell | 1.66e-20 | 7 |
astrocyte | 1.66e-20 | 7 |
oligodendrocyte precursor cell | 1.66e-20 | 7 |
astrocyte of the cerebral cortex | 2.60e-13 | 3 |
neural cell | 9.70e-13 | 25 |
neurectodermal cell | 3.99e-09 | 59 |
glial cell (sensu Vertebrata) | 5.00e-08 | 15 |
glial cell | 5.00e-08 | 15 |
glioblast | 5.00e-08 | 15 |
glioblast (sensu Vertebrata) | 5.00e-08 | 15 |
neuronal stem cell | 7.91e-08 | 8 |
neuron associated cell | 4.16e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 4.16e-07 | 17 |
ectodermal cell | 5.24e-07 | 72 |
migratory neural crest cell | 5.24e-07 | 41 |
embryonic stem cell | 7.82e-07 | 5 |