FFCP PHASE1:Mm9::chr4:126430593..126430605,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=26562|HGNC=|MCL_coexpression_id=1|UniProt=Q9Z0E0|association_with_transcript=47bp_to_ENSMUST00000030637_5end|description=CAGE_peak_3_at_Ncdn_5end|id=chr4:126430593..126430605,-|ontology_enrichment_celltype=CL:0000117!1.36e-12!23;CL:0000337!1.36e-12!23;CL:0000221!8.97e-12!44;CL:0000133!8.97e-12!44;CL:0000540!1.50e-11!33;CL:0000047!1.50e-11!33;CL:0000031!1.50e-11!33;CL:0000404!1.50e-11!33;CL:0002319!1.90e-11!43;CL:0000393!5.69e-08!39;CL:0000211!5.69e-08!39;CL:0000055!8.27e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.27e-24,23;CL:0000337,1.27e-24,23;CL:0000540,1.36e-19,33;CL:0000047,1.36e-19,33;CL:0000031,1.36e-19,33;CL:0000404,1.36e-19,33;CL:0002319,6.52e-16,43;CL:0000393,2.05e-15,39;CL:0000211,2.05e-15,39;CL:0000221,2.28e-15,44;CL:0000133,2.28e-15,44;CL:0002321,1.38e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.53e-27!75;UBERON:0001016!1.53e-27!75;UBERON:0001017!2.58e-27!73;UBERON:0005743!2.58e-27!73;UBERON:0001049!3.06e-24!52;UBERON:0005068!3.06e-24!52;UBERON:0006241!3.06e-24!52;UBERON:0007135!3.06e-24!52;UBERON:0000955!2.33e-23!50;UBERON:0006238!2.33e-23!50;UBERON:0002346!3.75e-23!71;UBERON:0003075!3.75e-23!71;UBERON:0007284!3.75e-23!71;UBERON:0002616!1.35e-22!49;UBERON:0000033!2.65e-22!63;UBERON:0004121!4.16e-21!102;UBERON:0000924!4.16e-21!102;UBERON:0006601!4.16e-21!102;UBERON:0002020!2.07e-19!34;UBERON:0003056!1.30e-18!49;UBERON:0003080!2.17e-18!40;UBERON:0002780!1.14e-17!39;UBERON:0001890!1.14e-17!39;UBERON:0006240!1.14e-17!39;UBERON:0002791!1.43e-16!29;UBERON:0003528!1.43e-16!29;UBERON:0001893!1.43e-16!29;UBERON:0007811!8.22e-14!86;UBERON:0000153!3.11e-13!94;UBERON:0000956!3.50e-12!21;UBERON:0001869!3.50e-12!21;UBERON:0000203!3.50e-12!21;UBERON:0002619!3.02e-10!17;UBERON:0002021!1.03e-07!10;UBERON:0000411!1.03e-07!10;UBERON:0001950!1.03e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.61e-46,73;UBERON:0000073,1.74e-45,54;UBERON:0001016,1.17e-44,75;UBERON:0001049,1.26e-42,52;UBERON:0005068,1.26e-42,52;UBERON:0006241,1.26e-42,52;UBERON:0007135,1.26e-42,52;UBERON:0002346,8.23e-39,64;UBERON:0003075,8.23e-39,64;UBERON:0007284,8.23e-39,64;UBERON:0002020,1.91e-37,34;UBERON:0000955,1.42e-36,47;UBERON:0006238,1.42e-36,47;UBERON:0002616,4.50e-35,46;UBERON:0004121,7.67e-35,95;UBERON:0000924,7.67e-35,95;UBERON:0006601,7.67e-35,95;UBERON:0010371,2.77e-32,73;UBERON:0003080,3.15e-32,40;UBERON:0003528,1.70e-31,29;UBERON:0002791,1.70e-31,29;UBERON:0001893,1.70e-31,29;UBERON:0002780,9.19e-31,39;UBERON:0001890,9.19e-31,39;UBERON:0006240,9.19e-31,39;UBERON:0003056,1.40e-27,49;UBERON:0010314,9.84e-23,92;UBERON:0000956,2.56e-22,21;UBERON:0001869,2.56e-22,21;UBERON:0000203,2.56e-22,21;UBERON:0002619,2.87e-18,17;UBERON:0002021,2.00e-14,10;UBERON:0000411,2.00e-14,10;UBERON:0001950,2.00e-14,10;UBERON:0000025,3.48e-13,114;UBERON:0004111,2.39e-12,122;UBERON:0003076,3.34e-10,12;UBERON:0003057,3.34e-10,12;UBERON:0002420,4.19e-10,8;UBERON:0007245,4.19e-10,8;UBERON:0010009,4.19e-10,8;UBERON:0010011,4.19e-10,8;UBERON:0000454,4.19e-10,8;UBERON:0011216,3.28e-09,194;UBERON:0002240,3.06e-08,6;UBERON:0005174,3.06e-08,6;UBERON:0001137,3.06e-08,6;UBERON:0000483,5.89e-07,174;UBERON:0001948,6.58e-07,5;UBERON:0002315,6.58e-07,5;UBERON:0000119,9.77e-07,176|phase1_expression=0.80074423552397,0,0.454999239389536,0,0.500895729946347,0.503637815735669,0.700837921786577,0.516493293766305,0.563154888606667,2.34064526321993,0,0,0.342401459862411,0.262261207256992,0.333109761815663,0.202475267389826,0,0.157731082679119,0.274228867211478,0,5.95303031057488,0.297872853602656,0,0.95995453676044,0.22940928106717,0,0.86152399231815,0.430942465371778,0,0,0,0.635030673459631,0,0,0,0,0.612508068787107,0.418531630736908,0.7813353445238,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,1.5378032791413,0.58328969722285,0.419959264876088,0,0,0,0.672187598284928,0.257259436035947,0.286533439938757,0,2.22548106945558,1.5869729378161,2.53532561402472,0.338844532069132,0,0,0,0.7104801149461,0.299600110518405,2.30530983192933,1.55534418462716,1.89008313664367,1.68259969081106,18.2816630018434,14.7981922437581,1.10241719293459,1.0543001812006,1.83843757322004,25.3266526298594,40.7322608491749,30.5677001179925,2.76961204233407,1.18933936683133,2.08365348222704,26.5223849051312,24.7615548413939,23.8365266531824,6.77645746589436,9.11178757114259,3.16879057903011,0.454357159999104,0.68014404096107,0,0,1.3599426674155,0.539703191637817,0,0,1.26399978118577,1.36344258062446,1.03914401841148,1.06001872353102,0.985903938436763,0,0,0,0.216491041011214,0,0,0.91347103775248,0.258937883647172,0.148442139064825,0.173485326766136,0,0.691846491768175,0.301445281105245,0.823120949949934,0.251333182659351,0,0,0,0.323533699894818,0,0,0,6.44117753425404,9.00620839297857,0,0.239630249011841,0,0.127070227073065,42.9899135091841,69.5400916284312,3.39266750704734,33.8957424374939,25.5715457330331,34.0772393077679,33.4217001919581,0.101839363850316,0.124406970610093,0.758168275301024,1.26265113531884,0.520481771850815,0,0.360124259610698,0.452114453507145,0.748401490664606,0.640568601424249,0.843315521037559,1.81092359517311,0.215567992932842,0.567318240503458,0.351902248327898,0.43839146485515,0.556094498451196,0.348252166522167,0,0.398068533636986,0,0,0.284163499395593,0.207125772535502,0.469052119962192,0.180062061461015,0.473489471170421,0,0.462801338662135,0.465067889500816,0,0.467061369468678,0.16455984991348,0.492502392237286,0.324275238183423,0.146199987425332,0,0.134206418760372,101.570045156473,2.36680608472354,0.330418782983798,0,0.639864751605702,0.696710015581316,0.257734922644187,0,0,0.190225626112559,0.474529061544512,0,0,0.397912944082302,0,0,0,0.199141273254367,0.379335801906163,0.342745537829186,0,0,0.581857461502877,0.210407459670956,0.316182685621286,0.147610147979602,0,0.123397163921801,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0.509235257325564,0,0.167506257441816,0.476087281772027,0,0.472905432318573,0.8858587585951,0.318909537314974,0.163863314715738,0,0.144649058581512,0,0,0,0.275936746304732,27.4541508879124,20.0431984072667,0.327869890753351,0,1.26203287766503,0.390438744296638,1.29254038639679,0.238968797952552,0.668396022247182,0.849229592366497,0,1.46127928955656,0,50.7687679946455,0.283880170416537,0.35613120733451,0.325773918707152,0.164970122972535,0,0,0.604647113929502,0.188605079755898,0,0,0.258428293168221,0,0,0,0,0,1.02131881726136,0.36012218806262,0.646793418913773,0.214337035031592,0.532020700926821,0.178368817602071,1.48094118541909,1.522324745573,0,0.21183207086382,0.882113592219848,0,0.322928853391811,0.120625849856312,0.119372344003136,0,0.291480836629851,33.7474049659128,0.170870880797853,0.206386867963223,0.555583582109135,0,0,0,0,0.419854356970974,0.138199973804424,0,0.474503990371703,0,0.324016022465404,0.209088296014469,0.218362563746178,0.134864346384821,0.330613822901344,0.26175594198403,0.259229946583586,0,0,0.448549638131936,0.165458490457098,0.583353565032143,0,0.337912250981556,0.234714477291508,0.2604087696879,0.629156066554265,0.241584120826006,0.864090018773596,0.316011120628178,0,0.102710957164827,0,0.179026695667481,0.39736270956253,0.240390899039938,0.295379054349154,0.403865799792591,0.15241361331,0.100826185136841,0.0974578807397524,0.192423683280659,0.233753804363138,0,0,0.0897138566094757,0,0,0.375364950902364,0.183151624267265,0,4.51414893631827,32.1908550291728,40.9689460491387,41.821372481076,55.8522842616985,32.8839609489908,30.215755895588,22.2757425076496,24.7676661773321,25.8291173120997,18.6393712230655,0.31136204275253,0.798049746802062,0.170733605754134,0.486213434136588,0.419226325255965,0.919217542250071,0.44449345560323,0.412070114477788,0,0.505394423527595,0.50695859978048,0.565879024158229,0.561849044819294,0.832326981263301,0.918967503289812,0.476293691283074,0.811190281613988,0.38581844092741,0.824171801606613,0.441596760403192,0.342869252385415,0.354951612318675,0.715308569841963,0.436039249896986,0.752875043322645,0.592302255241736,0.548783918618318,0.263069711437843,0.814824683075171,1.12228454331548,0.593175090620871,0.985044823755635,1.22769312950907,1.08455788830176,0.578719832943424,1.49886346762768,0.701794825336225,0.429742108096597,0.765153328275374,2.20591419119516,1.85494268496337|short_description=p3@Ncdn}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=26562 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9Z0E0 | |||
|association_with_transcript=47bp_to_ENSMUST00000030637_5end | |||
|cluster_id=chr4:126430593..126430605,- | |||
|description=CAGE_peak_3_at_Ncdn_5end | |||
|id=chr4:126430593..126430605,- | |||
|ontology_enrichment_celltype=CL:0000117!1.36e-12!23;CL:0000337!1.36e-12!23;CL:0000221!8.97e-12!44;CL:0000133!8.97e-12!44;CL:0000540!1.50e-11!33;CL:0000047!1.50e-11!33;CL:0000031!1.50e-11!33;CL:0000404!1.50e-11!33;CL:0002319!1.90e-11!43;CL:0000393!5.69e-08!39;CL:0000211!5.69e-08!39;CL:0000055!8.27e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.27e-24,23;CL:0000337,1.27e-24,23;CL:0000540,1.36e-19,33;CL:0000047,1.36e-19,33;CL:0000031,1.36e-19,33;CL:0000404,1.36e-19,33;CL:0002319,6.52e-16,43;CL:0000393,2.05e-15,39;CL:0000211,2.05e-15,39;CL:0000221,2.28e-15,44;CL:0000133,2.28e-15,44;CL:0002321,1.38e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.53e-27!75;UBERON:0001016!1.53e-27!75;UBERON:0001017!2.58e-27!73;UBERON:0005743!2.58e-27!73;UBERON:0001049!3.06e-24!52;UBERON:0005068!3.06e-24!52;UBERON:0006241!3.06e-24!52;UBERON:0007135!3.06e-24!52;UBERON:0000955!2.33e-23!50;UBERON:0006238!2.33e-23!50;UBERON:0002346!3.75e-23!71;UBERON:0003075!3.75e-23!71;UBERON:0007284!3.75e-23!71;UBERON:0002616!1.35e-22!49;UBERON:0000033!2.65e-22!63;UBERON:0004121!4.16e-21!102;UBERON:0000924!4.16e-21!102;UBERON:0006601!4.16e-21!102;UBERON:0002020!2.07e-19!34;UBERON:0003056!1.30e-18!49;UBERON:0003080!2.17e-18!40;UBERON:0002780!1.14e-17!39;UBERON:0001890!1.14e-17!39;UBERON:0006240!1.14e-17!39;UBERON:0002791!1.43e-16!29;UBERON:0003528!1.43e-16!29;UBERON:0001893!1.43e-16!29;UBERON:0007811!8.22e-14!86;UBERON:0000153!3.11e-13!94;UBERON:0000956!3.50e-12!21;UBERON:0001869!3.50e-12!21;UBERON:0000203!3.50e-12!21;UBERON:0002619!3.02e-10!17;UBERON:0002021!1.03e-07!10;UBERON:0000411!1.03e-07!10;UBERON:0001950!1.03e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.61e-46,73;UBERON:0000073,1.74e-45,54;UBERON:0001016,1.17e-44,75;UBERON:0001049,1.26e-42,52;UBERON:0005068,1.26e-42,52;UBERON:0006241,1.26e-42,52;UBERON:0007135,1.26e-42,52;UBERON:0002346,8.23e-39,64;UBERON:0003075,8.23e-39,64;UBERON:0007284,8.23e-39,64;UBERON:0002020,1.91e-37,34;UBERON:0000955,1.42e-36,47;UBERON:0006238,1.42e-36,47;UBERON:0002616,4.50e-35,46;UBERON:0004121,7.67e-35,95;UBERON:0000924,7.67e-35,95;UBERON:0006601,7.67e-35,95;UBERON:0010371,2.77e-32,73;UBERON:0003080,3.15e-32,40;UBERON:0003528,1.70e-31,29;UBERON:0002791,1.70e-31,29;UBERON:0001893,1.70e-31,29;UBERON:0002780,9.19e-31,39;UBERON:0001890,9.19e-31,39;UBERON:0006240,9.19e-31,39;UBERON:0003056,1.40e-27,49;UBERON:0010314,9.84e-23,92;UBERON:0000956,2.56e-22,21;UBERON:0001869,2.56e-22,21;UBERON:0000203,2.56e-22,21;UBERON:0002619,2.87e-18,17;UBERON:0002021,2.00e-14,10;UBERON:0000411,2.00e-14,10;UBERON:0001950,2.00e-14,10;UBERON:0000025,3.48e-13,114;UBERON:0004111,2.39e-12,122;UBERON:0003076,3.34e-10,12;UBERON:0003057,3.34e-10,12;UBERON:0002420,4.19e-10,8;UBERON:0007245,4.19e-10,8;UBERON:0010009,4.19e-10,8;UBERON:0010011,4.19e-10,8;UBERON:0000454,4.19e-10,8;UBERON:0011216,3.28e-09,194;UBERON:0002240,3.06e-08,6;UBERON:0005174,3.06e-08,6;UBERON:0001137,3.06e-08,6;UBERON:0000483,5.89e-07,174;UBERON:0001948,6.58e-07,5;UBERON:0002315,6.58e-07,5;UBERON:0000119,9.77e-07,176 | |||
|phase1_expression=0.80074423552397,0,0.454999239389536,0,0.500895729946347,0.503637815735669,0.700837921786577,0.516493293766305,0.563154888606667,2.34064526321993,0,0,0.342401459862411,0.262261207256992,0.333109761815663,0.202475267389826,0,0.157731082679119,0.274228867211478,0,5.95303031057488,0.297872853602656,0,0.95995453676044,0.22940928106717,0,0.86152399231815,0.430942465371778,0,0,0,0.635030673459631,0,0,0,0,0.612508068787107,0.418531630736908,0.7813353445238,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,1.5378032791413,0.58328969722285,0.419959264876088,0,0,0,0.672187598284928,0.257259436035947,0.286533439938757,0,2.22548106945558,1.5869729378161,2.53532561402472,0.338844532069132,0,0,0,0.7104801149461,0.299600110518405,2.30530983192933,1.55534418462716,1.89008313664367,1.68259969081106,18.2816630018434,14.7981922437581,1.10241719293459,1.0543001812006,1.83843757322004,25.3266526298594,40.7322608491749,30.5677001179925,2.76961204233407,1.18933936683133,2.08365348222704,26.5223849051312,24.7615548413939,23.8365266531824,6.77645746589436,9.11178757114259,3.16879057903011,0.454357159999104,0.68014404096107,0,0,1.3599426674155,0.539703191637817,0,0,1.26399978118577,1.36344258062446,1.03914401841148,1.06001872353102,0.985903938436763,0,0,0,0.216491041011214,0,0,0.91347103775248,0.258937883647172,0.148442139064825,0.173485326766136,0,0.691846491768175,0.301445281105245,0.823120949949934,0.251333182659351,0,0,0,0.323533699894818,0,0,0,6.44117753425404,9.00620839297857,0,0.239630249011841,0,0.127070227073065,42.9899135091841,69.5400916284312,3.39266750704734,33.8957424374939,25.5715457330331,34.0772393077679,33.4217001919581,0.101839363850316,0.124406970610093,0.758168275301024,1.26265113531884,0.520481771850815,0,0.360124259610698,0.452114453507145,0.748401490664606,0.640568601424249,0.843315521037559,1.81092359517311,0.215567992932842,0.567318240503458,0.351902248327898,0.43839146485515,0.556094498451196,0.348252166522167,0,0.398068533636986,0,0,0.284163499395593,0.207125772535502,0.469052119962192,0.180062061461015,0.473489471170421,0,0.462801338662135,0.465067889500816,0,0.467061369468678,0.16455984991348,0.492502392237286,0.324275238183423,0.146199987425332,0,0.134206418760372,101.570045156473,2.36680608472354,0.330418782983798,0,0.639864751605702,0.696710015581316,0.257734922644187,0,0,0.190225626112559,0.474529061544512,0,0,0.397912944082302,0,0,0,0.199141273254367,0.379335801906163,0.342745537829186,0,0,0.581857461502877,0.210407459670956,0.316182685621286,0.147610147979602,0,0.123397163921801,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0.509235257325564,0,0.167506257441816,0.476087281772027,0,0.472905432318573,0.8858587585951,0.318909537314974,0.163863314715738,0,0.144649058581512,0,0,0,0.275936746304732,27.4541508879124,20.0431984072667,0.327869890753351,0,1.26203287766503,0.390438744296638,1.29254038639679,0.238968797952552,0.668396022247182,0.849229592366497,0,1.46127928955656,0,50.7687679946455,0.283880170416537,0.35613120733451,0.325773918707152,0.164970122972535,0,0,0.604647113929502,0.188605079755898,0,0,0.258428293168221,0,0,0,0,0,1.02131881726136,0.36012218806262,0.646793418913773,0.214337035031592,0.532020700926821,0.178368817602071,1.48094118541909,1.522324745573,0,0.21183207086382,0.882113592219848,0,0.322928853391811,0.120625849856312,0.119372344003136,0,0.291480836629851,33.7474049659128,0.170870880797853,0.206386867963223,0.555583582109135,0,0,0,0,0.419854356970974,0.138199973804424,0,0.474503990371703,0,0.324016022465404,0.209088296014469,0.218362563746178,0.134864346384821,0.330613822901344,0.26175594198403,0.259229946583586,0,0,0.448549638131936,0.165458490457098,0.583353565032143,0,0.337912250981556,0.234714477291508,0.2604087696879,0.629156066554265,0.241584120826006,0.864090018773596,0.316011120628178,0,0.102710957164827,0,0.179026695667481,0.39736270956253,0.240390899039938,0.295379054349154,0.403865799792591,0.15241361331,0.100826185136841,0.0974578807397524,0.192423683280659,0.233753804363138,0,0,0.0897138566094757,0,0,0.375364950902364,0.183151624267265,0,4.51414893631827,32.1908550291728,40.9689460491387,41.821372481076,55.8522842616985,32.8839609489908,30.215755895588,22.2757425076496,24.7676661773321,25.8291173120997,18.6393712230655,0.31136204275253,0.798049746802062,0.170733605754134,0.486213434136588,0.419226325255965,0.919217542250071,0.44449345560323,0.412070114477788,0,0.505394423527595,0.50695859978048,0.565879024158229,0.561849044819294,0.832326981263301,0.918967503289812,0.476293691283074,0.811190281613988,0.38581844092741,0.824171801606613,0.441596760403192,0.342869252385415,0.354951612318675,0.715308569841963,0.436039249896986,0.752875043322645,0.592302255241736,0.548783918618318,0.263069711437843,0.814824683075171,1.12228454331548,0.593175090620871,0.985044823755635,1.22769312950907,1.08455788830176,0.578719832943424,1.49886346762768,0.701794825336225,0.429742108096597,0.765153328275374,2.20591419119516,1.85494268496337 | |||
|short_description=p3@Ncdn | |||
}} |
Latest revision as of 08:36, 26 September 2015
Short description: | p3@Ncdn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ncdn_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 47bp_to_ENSMUST00000030637_5end |
EntrezGene: | Ncdn |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.27e-24 | 23 |
neuroblast (sensu Vertebrata) | 1.27e-24 | 23 |
neuron | 1.36e-19 | 33 |
neuronal stem cell | 1.36e-19 | 33 |
neuroblast | 1.36e-19 | 33 |
electrically signaling cell | 1.36e-19 | 33 |
neural cell | 6.52e-16 | 43 |
electrically responsive cell | 2.05e-15 | 39 |
electrically active cell | 2.05e-15 | 39 |
ectodermal cell | 2.28e-15 | 44 |
neurectodermal cell | 2.28e-15 | 44 |
embryonic cell | 1.38e-07 | 70 |