FFCP PHASE1:Mm9::chr17:56109874..56109908,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20420 | |EntrezGene=20420 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=O88834 | |UniProt=O88834 | ||
|association_with_transcript=0bp_to_ENSMUST00000044216,NM_001159523,NM_009168,uc008dal.2,uc008dam.2_5end | |association_with_transcript=0bp_to_ENSMUST00000044216,NM_001159523,NM_009168,uc008dal.2,uc008dam.2_5end | ||
|cluster_id=chr17:56109874..56109908,+ | |||
|description=CAGE_peak_2_at_Shd_5end | |description=CAGE_peak_2_at_Shd_5end | ||
|id=chr17:56109874..56109908,+ | |id=chr17:56109874..56109908,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.12e-16!33;CL:0000047!4.12e-16!33;CL:0000031!4.12e-16!33;CL:0000404!4.12e-16!33;CL:0000117!1.11e-15!23;CL:0000337!1.11e-15!23;CL:0000221!2.21e-12!44;CL:0000133!2.21e-12!44;CL:0002319!2.97e-12!43;CL:0000393!7.04e-11!39;CL:0000211!7.04e-11!39;CL:0000055!4.56e-08!50 | |ontology_enrichment_celltype=CL:0000540!4.12e-16!33;CL:0000047!4.12e-16!33;CL:0000031!4.12e-16!33;CL:0000404!4.12e-16!33;CL:0000117!1.11e-15!23;CL:0000337!1.11e-15!23;CL:0000221!2.21e-12!44;CL:0000133!2.21e-12!44;CL:0002319!2.97e-12!43;CL:0000393!7.04e-11!39;CL:0000211!7.04e-11!39;CL:0000055!4.56e-08!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.87e-19,23;CL:0000337,2.87e-19,23;CL:0000540,1.83e-18,33;CL:0000047,1.83e-18,33;CL:0000031,1.83e-18,33;CL:0000404,1.83e-18,33;CL:0000393,1.15e-13,39;CL:0000211,1.15e-13,39;CL:0000221,1.87e-11,44;CL:0000133,1.87e-11,44;CL:0002319,2.79e-11,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.93e-23!73;UBERON:0005743!3.93e-23!73;UBERON:0000073!1.64e-22!75;UBERON:0001016!1.64e-22!75;UBERON:0002346!2.55e-21!71;UBERON:0003075!2.55e-21!71;UBERON:0007284!2.55e-21!71;UBERON:0001049!7.75e-20!52;UBERON:0005068!7.75e-20!52;UBERON:0006241!7.75e-20!52;UBERON:0007135!7.75e-20!52;UBERON:0004121!3.27e-19!102;UBERON:0000924!3.27e-19!102;UBERON:0006601!3.27e-19!102;UBERON:0000033!9.18e-19!63;UBERON:0003056!8.26e-18!49;UBERON:0002020!8.62e-18!34;UBERON:0000955!5.49e-17!50;UBERON:0006238!5.49e-17!50;UBERON:0002616!6.42e-17!49;UBERON:0003080!2.83e-15!40;UBERON:0002780!4.72e-15!39;UBERON:0001890!4.72e-15!39;UBERON:0006240!4.72e-15!39;UBERON:0002791!3.18e-14!29;UBERON:0003528!3.18e-14!29;UBERON:0001893!3.18e-14!29;UBERON:0000956!7.36e-10!21;UBERON:0001869!7.36e-10!21;UBERON:0000203!7.36e-10!21;UBERON:0000153!2.06e-09!94;UBERON:0007811!7.88e-08!86;UBERON:0000468!1.32e-07!333;UBERON:0002619!2.06e-07!17 | |ontology_enrichment_uberon=UBERON:0001017!3.93e-23!73;UBERON:0005743!3.93e-23!73;UBERON:0000073!1.64e-22!75;UBERON:0001016!1.64e-22!75;UBERON:0002346!2.55e-21!71;UBERON:0003075!2.55e-21!71;UBERON:0007284!2.55e-21!71;UBERON:0001049!7.75e-20!52;UBERON:0005068!7.75e-20!52;UBERON:0006241!7.75e-20!52;UBERON:0007135!7.75e-20!52;UBERON:0004121!3.27e-19!102;UBERON:0000924!3.27e-19!102;UBERON:0006601!3.27e-19!102;UBERON:0000033!9.18e-19!63;UBERON:0003056!8.26e-18!49;UBERON:0002020!8.62e-18!34;UBERON:0000955!5.49e-17!50;UBERON:0006238!5.49e-17!50;UBERON:0002616!6.42e-17!49;UBERON:0003080!2.83e-15!40;UBERON:0002780!4.72e-15!39;UBERON:0001890!4.72e-15!39;UBERON:0006240!4.72e-15!39;UBERON:0002791!3.18e-14!29;UBERON:0003528!3.18e-14!29;UBERON:0001893!3.18e-14!29;UBERON:0000956!7.36e-10!21;UBERON:0001869!7.36e-10!21;UBERON:0000203!7.36e-10!21;UBERON:0000153!2.06e-09!94;UBERON:0007811!7.88e-08!86;UBERON:0000468!1.32e-07!333;UBERON:0002619!2.06e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.58e-26,64;UBERON:0003075,7.58e-26,64;UBERON:0007284,7.58e-26,64;UBERON:0001017,1.48e-24,73;UBERON:0001016,2.78e-23,75;UBERON:0000073,6.72e-23,54;UBERON:0001049,3.99e-22,52;UBERON:0005068,3.99e-22,52;UBERON:0006241,3.99e-22,52;UBERON:0007135,3.99e-22,52;UBERON:0010371,5.34e-22,73;UBERON:0002020,2.00e-21,34;UBERON:0004121,2.64e-21,95;UBERON:0000924,2.64e-21,95;UBERON:0006601,2.64e-21,95;UBERON:0003056,1.07e-20,49;UBERON:0003080,5.83e-18,40;UBERON:0002780,1.11e-17,39;UBERON:0001890,1.11e-17,39;UBERON:0006240,1.11e-17,39;UBERON:0000955,2.03e-17,47;UBERON:0006238,2.03e-17,47;UBERON:0002616,2.52e-17,46;UBERON:0003528,5.68e-17,29;UBERON:0002791,5.68e-17,29;UBERON:0001893,5.68e-17,29;UBERON:0010314,1.10e-13,92;UBERON:0000956,1.58e-11,21;UBERON:0001869,1.58e-11,21;UBERON:0000203,1.58e-11,21;UBERON:0002619,1.70e-08,17;UBERON:0002021,5.91e-07,10;UBERON:0000411,5.91e-07,10;UBERON:0001950,5.91e-07,10;UBERON:0002420,9.25e-07,8;UBERON:0007245,9.25e-07,8;UBERON:0010009,9.25e-07,8;UBERON:0010011,9.25e-07,8;UBERON:0000454,9.25e-07,8 | |||
|phase1_expression=4.96461426024861,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.872100625521786,0.659058548203415,0,0.419959264876088,0,0,0,0,0,0,0,44.5096213891115,44.4352422588508,32.9592329823213,0,0,0,0,0,0,0.768436610643109,22.7080250955566,35.3715558429029,22.7150958259493,26.2798905651499,26.9459619960969,27.5604298233647,27.2201137691791,26.6573448116906,2.20231761998777,3.57524546638526,4.45458946443106,37.0600468521845,31.0143111812169,31.7757156039624,6.70039197603314,5.06486349028512,4.73674568108111,33.2930301585245,25.0574158206421,40.0758808524396,0.075726193333184,0.226714680320357,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,1.69012103732017,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0.520455980298408,0.304465478312141,0.230615497256059,0.301445281105245,0.587943535678524,0,0,0,0,0.161766849947409,0,0,0,2.04946557908083,2.09446706813455,0,0,0,0,2.54644086988199,1.83000241127451,14.7015591972051,5.38855392596057,2.30143911597297,4.57133698031032,2.59586020908412,0.305518091550949,0.248813941220186,0,0,4.68433594665733,5.28774840196988,4.86167750474443,3.46621081022145,4.55844544313897,6.02134485338794,4.59138450342671,0.776110112217047,5.17363183038821,8.50977360755187,8.09375171154165,5.04150184583422,3.05851974148158,1.0447564995665,0.411564272815887,1.99034266818493,0,0,0,0.414251545071004,1.64168241986767,0.36012412292203,0.946978942340841,0,0.154267112887378,0.465067889500816,0.268273401399619,0.116765342367169,0.16455984991348,0.164167464079095,0.243206428637567,0,0,0.268412837520744,2.3131894342054,15.3327872445134,0,0,2.98603550749328,2.09013004674395,1.41754207454303,0.605050573870028,0.889512175379481,0,0,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0,1.32767530667157,1.14248512609729,2.25415471346161,2.44381593414377,2.90928730751439,2.66516115583211,4.04713837595247,1.47610147979602,0.784993639206874,1.60416313098341,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,3.03186258832776,0.977789858652155,1.35796068620151,0.938760993154008,0.167506257441816,0,0.195133647857799,0.472905432318573,0.44292937929755,0.478364305972461,0,0,0,0,0,0,0,1.9266070798535,2.69586879162067,0,0.252470927204373,2.2085575359138,1.17131623288992,2.80050417052639,0.716906393857656,1.33679204449436,0.283076530788832,2.42886421004937,2.04579100537918,2.76701444562566,1.28528526568723,0.141940085208269,0.712262414669021,0.81443479676788,0.164970122972535,0,0.971122544619926,0.604647113929502,0.188605079755898,0.295301892880773,0,0.516856586336442,0.363533729477506,0,0,0,0,0,2.88097750450096,5.43306471887569,2.14337035031592,2.30542303734956,0.535106452806212,1.31639216481697,2.13125464380219,0,0,0,0,0.161464426695906,0.180938774784468,0.238744688006273,0,0.291480836629851,4.26478194624172,0.170870880797853,0.412773735926445,0,0,0,0,0,0,0,0,3.00519193902079,1.01659733563424,0.540026704109006,0.836353184057875,0.436725127492355,0.404593039154462,0.495920734352016,0.26175594198403,0,0,0,1.04661582230785,0.66183396182839,1.36115831840833,1.16243841129958,1.18269287843545,1.40828686374905,0.13020438484395,0.314578033277133,0,0,0,1.01362607645082,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0.443971906748129,0,0,0,0,0,0.214368379079066,0,5.64751842617067,6.90487854760765,12.0308057822273,6.8741272937475,3.42541259885321,8.3093328712867,4.05013500139084,4.95353323546643,2.26571204492102,3.10656187051092,4.15149390336707,9.57659696162474,9.04888110496911,5.10524105843418,5.44994222832754,4.59608771125035,4.4449345560323,3.09052585858341,3.53011130550997,2.52697211763797,4.56262739802432,4.33840585187975,3.37109426891577,3.45735822986294,3.9056118889817,5.23923060411381,3.82418275618023,4.43691207066522,5.76920261124629,3.38557516309114,4.11443102862498,1.77475806159337,3.57654284920981,3.0522747492789,4.04670335785922,3.63842813934209,3.29270351170991,2.89376682581627,4.07412341537585,3.36685362994643,3.32178050747688,2.85662998889134,5.32000356120596,3.09873682371932,2.89359916471712,5.9954538705107,1.87145286756327,2.79332370262788,2.10417165275728,0.882365676478062,0.695603506861264 | |phase1_expression=4.96461426024861,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.872100625521786,0.659058548203415,0,0.419959264876088,0,0,0,0,0,0,0,44.5096213891115,44.4352422588508,32.9592329823213,0,0,0,0,0,0,0.768436610643109,22.7080250955566,35.3715558429029,22.7150958259493,26.2798905651499,26.9459619960969,27.5604298233647,27.2201137691791,26.6573448116906,2.20231761998777,3.57524546638526,4.45458946443106,37.0600468521845,31.0143111812169,31.7757156039624,6.70039197603314,5.06486349028512,4.73674568108111,33.2930301585245,25.0574158206421,40.0758808524396,0.075726193333184,0.226714680320357,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,1.69012103732017,0,0,0,0,0,0,0.11418387971906,0,0.29688427812965,0.520455980298408,0.304465478312141,0.230615497256059,0.301445281105245,0.587943535678524,0,0,0,0,0.161766849947409,0,0,0,2.04946557908083,2.09446706813455,0,0,0,0,2.54644086988199,1.83000241127451,14.7015591972051,5.38855392596057,2.30143911597297,4.57133698031032,2.59586020908412,0.305518091550949,0.248813941220186,0,0,4.68433594665733,5.28774840196988,4.86167750474443,3.46621081022145,4.55844544313897,6.02134485338794,4.59138450342671,0.776110112217047,5.17363183038821,8.50977360755187,8.09375171154165,5.04150184583422,3.05851974148158,1.0447564995665,0.411564272815887,1.99034266818493,0,0,0,0.414251545071004,1.64168241986767,0.36012412292203,0.946978942340841,0,0.154267112887378,0.465067889500816,0.268273401399619,0.116765342367169,0.16455984991348,0.164167464079095,0.243206428637567,0,0,0.268412837520744,2.3131894342054,15.3327872445134,0,0,2.98603550749328,2.09013004674395,1.41754207454303,0.605050573870028,0.889512175379481,0,0,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0,1.32767530667157,1.14248512609729,2.25415471346161,2.44381593414377,2.90928730751439,2.66516115583211,4.04713837595247,1.47610147979602,0.784993639206874,1.60416313098341,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,3.03186258832776,0.977789858652155,1.35796068620151,0.938760993154008,0.167506257441816,0,0.195133647857799,0.472905432318573,0.44292937929755,0.478364305972461,0,0,0,0,0,0,0,1.9266070798535,2.69586879162067,0,0.252470927204373,2.2085575359138,1.17131623288992,2.80050417052639,0.716906393857656,1.33679204449436,0.283076530788832,2.42886421004937,2.04579100537918,2.76701444562566,1.28528526568723,0.141940085208269,0.712262414669021,0.81443479676788,0.164970122972535,0,0.971122544619926,0.604647113929502,0.188605079755898,0.295301892880773,0,0.516856586336442,0.363533729477506,0,0,0,0,0,2.88097750450096,5.43306471887569,2.14337035031592,2.30542303734956,0.535106452806212,1.31639216481697,2.13125464380219,0,0,0,0,0.161464426695906,0.180938774784468,0.238744688006273,0,0.291480836629851,4.26478194624172,0.170870880797853,0.412773735926445,0,0,0,0,0,0,0,0,3.00519193902079,1.01659733563424,0.540026704109006,0.836353184057875,0.436725127492355,0.404593039154462,0.495920734352016,0.26175594198403,0,0,0,1.04661582230785,0.66183396182839,1.36115831840833,1.16243841129958,1.18269287843545,1.40828686374905,0.13020438484395,0.314578033277133,0,0,0,1.01362607645082,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0.443971906748129,0,0,0,0,0,0.214368379079066,0,5.64751842617067,6.90487854760765,12.0308057822273,6.8741272937475,3.42541259885321,8.3093328712867,4.05013500139084,4.95353323546643,2.26571204492102,3.10656187051092,4.15149390336707,9.57659696162474,9.04888110496911,5.10524105843418,5.44994222832754,4.59608771125035,4.4449345560323,3.09052585858341,3.53011130550997,2.52697211763797,4.56262739802432,4.33840585187975,3.37109426891577,3.45735822986294,3.9056118889817,5.23923060411381,3.82418275618023,4.43691207066522,5.76920261124629,3.38557516309114,4.11443102862498,1.77475806159337,3.57654284920981,3.0522747492789,4.04670335785922,3.63842813934209,3.29270351170991,2.89376682581627,4.07412341537585,3.36685362994643,3.32178050747688,2.85662998889134,5.32000356120596,3.09873682371932,2.89359916471712,5.9954538705107,1.87145286756327,2.79332370262788,2.10417165275728,0.882365676478062,0.695603506861264 | ||
|short_description=p2@Shd | |short_description=p2@Shd | ||
}} | }} |
Latest revision as of 16:42, 26 September 2015
Short description: | p2@Shd |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Shd_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000044216, NM_001159523, NM_009168, uc008dal.2, uc008dam.2_5end |
EntrezGene: | Shd |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.87e-19 | 23 |
neuroblast (sensu Vertebrata) | 2.87e-19 | 23 |
neuron | 1.83e-18 | 33 |
neuronal stem cell | 1.83e-18 | 33 |
neuroblast | 1.83e-18 | 33 |
electrically signaling cell | 1.83e-18 | 33 |
electrically responsive cell | 1.15e-13 | 39 |
electrically active cell | 1.15e-13 | 39 |
ectodermal cell | 1.87e-11 | 44 |
neurectodermal cell | 1.87e-11 | 44 |
neural cell | 2.79e-11 | 43 |