FFCP PHASE1:Mm9::chr7:4642362..4642380,+: Difference between revisions
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{{FFCP|EntrezGene=381979|HGNC=|MCL_coexpression_id=13|UniProt=Q5RJI5|association_with_transcript=-149bp_to_ENSMUST00000048248,NM_001003920,NM_001168572,uc009eye.1,uc009eyf.1_5end|description=CAGE_peak_3_at_Brsk1_5end|id=chr7:4642362..4642380,+|ontology_enrichment_celltype=CL:0000117!1.71e-16!23;CL:0000337!1.71e-16!23;CL:0000221!2.97e-16!44;CL:0000133!2.97e-16!44;CL:0000540!4.05e-16!33;CL:0000047!4.05e-16!33;CL:0000031!4.05e-16!33;CL:0000404!4.05e-16!33;CL:0002319!8.93e-16!43;CL:0000393!4.55e-13!39;CL:0000211!4.55e-13!39;CL:0000055!1.11e-12!50|ontology_enrichment_celltype_v019_2=CL:0000117,8.36e-32,23;CL:0000337,8.36e-32,23;CL:0000540,1.15e-21,33;CL:0000047,1.15e-21,33;CL:0000031,1.15e-21,33;CL:0000404,1.15e-21,33;CL:0000393,3.41e-17,39;CL:0000211,3.41e-17,39;CL:0000221,4.36e-17,44;CL:0000133,4.36e-17,44;CL:0002319,2.87e-16,43;CL:0002321,9.06e-09,70;CL:0002609,8.23e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.24e-33!73;UBERON:0005743!1.24e-33!73;UBERON:0000073!3.83e-33!75;UBERON:0001016!3.83e-33!75;UBERON:0001049!1.73e-26!52;UBERON:0005068!1.73e-26!52;UBERON:0006241!1.73e-26!52;UBERON:0007135!1.73e-26!52;UBERON:0000955!1.12e-24!50;UBERON:0006238!1.12e-24!50;UBERON:0002616!4.29e-24!49;UBERON:0004121!6.75e-24!102;UBERON:0000924!6.75e-24!102;UBERON:0006601!6.75e-24!102;UBERON:0000033!2.69e-23!63;UBERON:0002346!1.01e-21!71;UBERON:0003075!1.01e-21!71;UBERON:0007284!1.01e-21!71;UBERON:0002020!2.50e-21!34;UBERON:0003080!8.00e-20!40;UBERON:0002780!3.45e-19!39;UBERON:0001890!3.45e-19!39;UBERON:0006240!3.45e-19!39;UBERON:0003056!4.85e-19!49;UBERON:0002791!1.94e-17!29;UBERON:0003528!1.94e-17!29;UBERON:0001893!1.94e-17!29;UBERON:0000153!2.75e-12!94;UBERON:0000956!2.76e-12!21;UBERON:0001869!2.76e-12!21;UBERON:0000203!2.76e-12!21;UBERON:0007811!2.27e-11!86;UBERON:0002619!4.23e-10!17;UBERON:0002021!1.59e-07!10;UBERON:0000411!1.59e-07!10;UBERON:0001950!1.59e-07!10;UBERON:0003076!3.58e-07!12;UBERON:0003057!3.58e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.41e-41,54;UBERON:0001017,3.78e-40,73;UBERON:0002020,3.70e-39,34;UBERON:0001016,1.03e-38,75;UBERON:0001049,3.33e-38,52;UBERON:0005068,3.33e-38,52;UBERON:0006241,3.33e-38,52;UBERON:0007135,3.33e-38,52;UBERON:0003528,2.44e-31,29;UBERON:0002791,2.44e-31,29;UBERON:0001893,2.44e-31,29;UBERON:0000955,1.99e-30,47;UBERON:0006238,1.99e-30,47;UBERON:0002616,2.33e-29,46;UBERON:0004121,4.99e-29,95;UBERON:0000924,4.99e-29,95;UBERON:0006601,4.99e-29,95;UBERON:0002346,8.18e-29,64;UBERON:0003075,8.18e-29,64;UBERON:0007284,8.18e-29,64;UBERON:0010371,1.45e-26,73;UBERON:0003080,1.90e-26,40;UBERON:0002780,2.85e-25,39;UBERON:0001890,2.85e-25,39;UBERON:0006240,2.85e-25,39;UBERON:0000956,5.42e-21,21;UBERON:0001869,5.42e-21,21;UBERON:0000203,5.42e-21,21;UBERON:0003056,6.22e-20,49;UBERON:0010314,1.34e-18,92;UBERON:0002619,1.31e-16,17;UBERON:0002021,1.25e-13,10;UBERON:0000411,1.25e-13,10;UBERON:0001950,1.25e-13,10;UBERON:0003076,7.56e-12,12;UBERON:0003057,7.56e-12,12;UBERON:0002420,2.25e-11,8;UBERON:0007245,2.25e-11,8;UBERON:0010009,2.25e-11,8;UBERON:0010011,2.25e-11,8;UBERON:0000454,2.25e-11,8;UBERON:0000025,3.47e-11,114;UBERON:0004111,3.55e-11,122;UBERON:0002240,2.48e-10,6;UBERON:0005174,2.48e-10,6;UBERON:0001137,2.48e-10,6;UBERON:0001948,7.04e-09,5;UBERON:0002315,7.04e-09,5;UBERON:0011216,1.80e-08,194;UBERON:0000369,1.78e-07,5;UBERON:0002435,1.78e-07,5;UBERON:0000204,1.78e-07,5;UBERON:0010082,1.78e-07,5|phase1_expression=1.28119077683835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0.782391344348039,0,0.219686182734472,0.388859798148567,0.139986421625363,1.43752564364972,0,0,0,0.771778308107841,0,0,7.89034197352431,3.70293685490423,6.33831403506179,0,0,0,0,0,0.599200221036809,0.768436610643109,1.76272340924412,2.02508907497536,2.73422449756797,15.7108041422092,11.4851641294839,1.71487118900936,4.2172007248024,4.5960939330501,7.70811166995721,7.40586560894089,7.21950706304344,4.61602007055678,6.49562269577109,3.64639359389732,8.37548997004143,3.93933827022176,4.27835093775068,4.71405736757868,8.96941589034349,5.21918448310842,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,1.40843419776681,1.28326477414318,0,0,0,0,0,0.11418387971906,0,0,0.693941307064543,0,0,0,0.587943535678524,0,0,0,0,0,0,0,0,1.46390398505774,2.51336048176146,0,0,0,0,3.89455662452539,2.74500361691176,3.5183218591602,5.56237824615285,5.11430914660661,5.61027720310812,4.54275536589721,0.712875546952214,0.248813941220186,0.252722758433675,0.210441855886474,0.130120442962704,0,0.540186389416048,0.150704817835715,0.476255494059295,0.512454881139399,0.937017245597288,0.258703370739016,0.215567992932842,0.567318240503458,0.703804496655795,0.43839146485515,0.278047249225598,0.696504333044333,0.411564272815887,0,0,0,0,0.207125772535502,0,0.36012412292203,0,0,0.154267112887378,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,5.67782861123144,2.2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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=381979 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q5RJI5 | |||
|association_with_transcript=-149bp_to_ENSMUST00000048248,NM_001003920,NM_001168572,uc009eye.1,uc009eyf.1_5end | |||
|cluster_id=chr7:4642362..4642380,+ | |||
|description=CAGE_peak_3_at_Brsk1_5end | |||
|id=chr7:4642362..4642380,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.71e-16!23;CL:0000337!1.71e-16!23;CL:0000221!2.97e-16!44;CL:0000133!2.97e-16!44;CL:0000540!4.05e-16!33;CL:0000047!4.05e-16!33;CL:0000031!4.05e-16!33;CL:0000404!4.05e-16!33;CL:0002319!8.93e-16!43;CL:0000393!4.55e-13!39;CL:0000211!4.55e-13!39;CL:0000055!1.11e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.36e-32,23;CL:0000337,8.36e-32,23;CL:0000540,1.15e-21,33;CL:0000047,1.15e-21,33;CL:0000031,1.15e-21,33;CL:0000404,1.15e-21,33;CL:0000393,3.41e-17,39;CL:0000211,3.41e-17,39;CL:0000221,4.36e-17,44;CL:0000133,4.36e-17,44;CL:0002319,2.87e-16,43;CL:0002321,9.06e-09,70;CL:0002609,8.23e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.24e-33!73;UBERON:0005743!1.24e-33!73;UBERON:0000073!3.83e-33!75;UBERON:0001016!3.83e-33!75;UBERON:0001049!1.73e-26!52;UBERON:0005068!1.73e-26!52;UBERON:0006241!1.73e-26!52;UBERON:0007135!1.73e-26!52;UBERON:0000955!1.12e-24!50;UBERON:0006238!1.12e-24!50;UBERON:0002616!4.29e-24!49;UBERON:0004121!6.75e-24!102;UBERON:0000924!6.75e-24!102;UBERON:0006601!6.75e-24!102;UBERON:0000033!2.69e-23!63;UBERON:0002346!1.01e-21!71;UBERON:0003075!1.01e-21!71;UBERON:0007284!1.01e-21!71;UBERON:0002020!2.50e-21!34;UBERON:0003080!8.00e-20!40;UBERON:0002780!3.45e-19!39;UBERON:0001890!3.45e-19!39;UBERON:0006240!3.45e-19!39;UBERON:0003056!4.85e-19!49;UBERON:0002791!1.94e-17!29;UBERON:0003528!1.94e-17!29;UBERON:0001893!1.94e-17!29;UBERON:0000153!2.75e-12!94;UBERON:0000956!2.76e-12!21;UBERON:0001869!2.76e-12!21;UBERON:0000203!2.76e-12!21;UBERON:0007811!2.27e-11!86;UBERON:0002619!4.23e-10!17;UBERON:0002021!1.59e-07!10;UBERON:0000411!1.59e-07!10;UBERON:0001950!1.59e-07!10;UBERON:0003076!3.58e-07!12;UBERON:0003057!3.58e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.41e-41,54;UBERON:0001017,3.78e-40,73;UBERON:0002020,3.70e-39,34;UBERON:0001016,1.03e-38,75;UBERON:0001049,3.33e-38,52;UBERON:0005068,3.33e-38,52;UBERON:0006241,3.33e-38,52;UBERON:0007135,3.33e-38,52;UBERON:0003528,2.44e-31,29;UBERON:0002791,2.44e-31,29;UBERON:0001893,2.44e-31,29;UBERON:0000955,1.99e-30,47;UBERON:0006238,1.99e-30,47;UBERON:0002616,2.33e-29,46;UBERON:0004121,4.99e-29,95;UBERON:0000924,4.99e-29,95;UBERON:0006601,4.99e-29,95;UBERON:0002346,8.18e-29,64;UBERON:0003075,8.18e-29,64;UBERON:0007284,8.18e-29,64;UBERON:0010371,1.45e-26,73;UBERON:0003080,1.90e-26,40;UBERON:0002780,2.85e-25,39;UBERON:0001890,2.85e-25,39;UBERON:0006240,2.85e-25,39;UBERON:0000956,5.42e-21,21;UBERON:0001869,5.42e-21,21;UBERON:0000203,5.42e-21,21;UBERON:0003056,6.22e-20,49;UBERON:0010314,1.34e-18,92;UBERON:0002619,1.31e-16,17;UBERON:0002021,1.25e-13,10;UBERON:0000411,1.25e-13,10;UBERON:0001950,1.25e-13,10;UBERON:0003076,7.56e-12,12;UBERON:0003057,7.56e-12,12;UBERON:0002420,2.25e-11,8;UBERON:0007245,2.25e-11,8;UBERON:0010009,2.25e-11,8;UBERON:0010011,2.25e-11,8;UBERON:0000454,2.25e-11,8;UBERON:0000025,3.47e-11,114;UBERON:0004111,3.55e-11,122;UBERON:0002240,2.48e-10,6;UBERON:0005174,2.48e-10,6;UBERON:0001137,2.48e-10,6;UBERON:0001948,7.04e-09,5;UBERON:0002315,7.04e-09,5;UBERON:0011216,1.80e-08,194;UBERON:0000369,1.78e-07,5;UBERON:0002435,1.78e-07,5;UBERON:0000204,1.78e-07,5;UBERON:0010082,1.78e-07,5 | |||
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|short_description=p3@Brsk1 | |||
}} |
Latest revision as of 17:48, 26 September 2015
Short description: | p3@Brsk1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Brsk1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -149bp_to_ENSMUST00000048248, NM_001003920, NM_001168572, uc009eye.1, uc009eyf.1_5end |
EntrezGene: | Brsk1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.36e-32 | 23 |
neuroblast (sensu Vertebrata) | 8.36e-32 | 23 |
neuron | 1.15e-21 | 33 |
neuronal stem cell | 1.15e-21 | 33 |
neuroblast | 1.15e-21 | 33 |
electrically signaling cell | 1.15e-21 | 33 |
electrically responsive cell | 3.41e-17 | 39 |
electrically active cell | 3.41e-17 | 39 |
ectodermal cell | 4.36e-17 | 44 |
neurectodermal cell | 4.36e-17 | 44 |
neural cell | 2.87e-16 | 43 |
embryonic cell | 9.06e-09 | 70 |
neuron of cerebral cortex | 8.23e-08 | 6 |