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FFCP PHASE1:Mm9::chr13:111070311..111070421,-: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=67295
|EntrezGene=67295
|HGNC=
|HGNC=
|MCL_coexpression_id=1
|TSSclassifier=NA
|UniProt=P62823,Q9CXS2,Q542T7
|UniProt=P62823,Q9CXS2,Q542T7
|association_with_transcript=0bp_to_ENSMUST00000167824,ENSMUST00000170993,NM_023852,uc007rvo.2_5end
|association_with_transcript=0bp_to_ENSMUST00000167824,ENSMUST00000170993,NM_023852,uc007rvo.2_5end
|cluster_id=chr13:111070311..111070421,-
|description=CAGE_peak_1_at_Rab3c_5end
|description=CAGE_peak_1_at_Rab3c_5end
|id=chr13:111070311..111070421,-
|id=chr13:111070311..111070421,-
|ontology_enrichment_celltype=CL:0000540!6.05e-16!33;CL:0000047!6.05e-16!33;CL:0000031!6.05e-16!33;CL:0000404!6.05e-16!33;CL:0000117!6.92e-14!23;CL:0000337!6.92e-14!23;CL:0000393!5.96e-13!39;CL:0000211!5.96e-13!39;CL:0000221!1.65e-11!44;CL:0000133!1.65e-11!44;CL:0002319!2.00e-11!43;CL:0000055!4.79e-09!50
|ontology_enrichment_celltype=CL:0000540!6.05e-16!33;CL:0000047!6.05e-16!33;CL:0000031!6.05e-16!33;CL:0000404!6.05e-16!33;CL:0000117!6.92e-14!23;CL:0000337!6.92e-14!23;CL:0000393!5.96e-13!39;CL:0000211!5.96e-13!39;CL:0000221!1.65e-11!44;CL:0000133!1.65e-11!44;CL:0002319!2.00e-11!43;CL:0000055!4.79e-09!50
|ontology_enrichment_celltype_v019_2=CL:0000540,3.43e-18,33;CL:0000047,3.43e-18,33;CL:0000031,3.43e-18,33;CL:0000404,3.43e-18,33;CL:0000117,8.24e-16,23;CL:0000337,8.24e-16,23;CL:0000221,3.56e-13,44;CL:0000133,3.56e-13,44;CL:0000393,3.80e-13,39;CL:0000211,3.80e-13,39;CL:0002319,4.42e-13,43
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002346!9.13e-30!71;UBERON:0003075!9.13e-30!71;UBERON:0007284!9.13e-30!71;UBERON:0000073!3.12e-29!75;UBERON:0001016!3.12e-29!75;UBERON:0001017!3.33e-29!73;UBERON:0005743!3.33e-29!73;UBERON:0004121!5.05e-29!102;UBERON:0000924!5.05e-29!102;UBERON:0006601!5.05e-29!102;UBERON:0000033!5.50e-24!63;UBERON:0001049!6.40e-24!52;UBERON:0005068!6.40e-24!52;UBERON:0006241!6.40e-24!52;UBERON:0007135!6.40e-24!52;UBERON:0000955!1.64e-23!50;UBERON:0006238!1.64e-23!50;UBERON:0002616!7.26e-23!49;UBERON:0003056!1.44e-20!49;UBERON:0003080!3.33e-19!40;UBERON:0002780!1.90e-18!39;UBERON:0001890!1.90e-18!39;UBERON:0006240!1.90e-18!39;UBERON:0002020!3.74e-18!34;UBERON:0002791!1.45e-15!29;UBERON:0003528!1.45e-15!29;UBERON:0001893!1.45e-15!29;UBERON:0000956!7.80e-11!21;UBERON:0001869!7.80e-11!21;UBERON:0000203!7.80e-11!21;UBERON:0007811!3.69e-10!86;UBERON:0002619!9.87e-09!17;UBERON:0002021!4.54e-08!10;UBERON:0000411!4.54e-08!10;UBERON:0001950!4.54e-08!10;UBERON:0000153!6.23e-08!94
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.43e-33,75;UBERON:0001017,5.92e-33,73;UBERON:0002346,2.48e-29,64;UBERON:0003075,2.48e-29,64;UBERON:0007284,2.48e-29,64;UBERON:0000073,1.04e-28,54;UBERON:0004121,1.19e-27,95;UBERON:0000924,1.19e-27,95;UBERON:0006601,1.19e-27,95;UBERON:0001049,1.12e-26,52;UBERON:0005068,1.12e-26,52;UBERON:0006241,1.12e-26,52;UBERON:0007135,1.12e-26,52;UBERON:0010371,5.71e-24,73;UBERON:0000955,1.64e-23,47;UBERON:0006238,1.64e-23,47;UBERON:0002616,8.75e-23,46;UBERON:0003056,6.06e-22,49;UBERON:0003080,5.52e-21,40;UBERON:0002020,1.63e-20,34;UBERON:0002780,4.04e-20,39;UBERON:0001890,4.04e-20,39;UBERON:0006240,4.04e-20,39;UBERON:0010314,5.92e-20,92;UBERON:0003528,1.60e-17,29;UBERON:0002791,1.60e-17,29;UBERON:0001893,1.60e-17,29;UBERON:0000956,4.61e-12,21;UBERON:0001869,4.61e-12,21;UBERON:0000203,4.61e-12,21;UBERON:0002619,1.22e-09,17;UBERON:0002021,4.35e-09,10;UBERON:0000411,4.35e-09,10;UBERON:0001950,4.35e-09,10;UBERON:0002420,9.69e-07,8;UBERON:0007245,9.69e-07,8;UBERON:0010009,9.69e-07,8;UBERON:0010011,9.69e-07,8;UBERON:0000454,9.69e-07,8
|phase1_expression=2.24208385946712,0,0,0.30246421130683,0,1.6787927191189,1.16806320297763,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,23.7270779521485,0,0,0.159992422793407,0.22940928106717,0.57423196411502,0.430761996159075,0.215471232685889,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0,1.52617609466313,0.219686182734472,0,0.139986421625363,1.43752564364972,0,0,0,0.257259436035947,0,0.515672092277442,87.6030275522058,97.334340186054,78.5950940347662,0,0,0,0,0,0,0,71.4421428805411,48.6021377994086,68.7762623619019,33.1355141908412,36.6641777979678,59.4080376192527,44.4722985524617,41.3648453974509,183.893521268979,212.216355897582,216.585211891303,94.9581271657396,108.321370025253,110.433634558033,105.810356621523,159.824581248997,161.049353156758,76.3088036376799,78.873911162703,93.7589212501262,1.21161909333094,3.85414956544606,0.289864488701678,0,0,0,0,0,5.75822122540183,0,0,0,3.66192891419369,0,0,0,0,0,0,5.25245846707676,0,36.8136504880765,10.9295755862666,14.6143429589828,11.992005857315,23.8141772073144,27.2805800554835,15.5826573248798,0.247194967734374,0.86759614151947,0,0,0.220841518460394,0,3.72783522436244,98.3743477958798,115.824028867841,1.53274233125155,0,0,0,196.075946980913,132.675174817402,76.5235004367344,172.433725630738,173.886510984625,203.840071712928,193.229344313699,0.203678727700633,0,0,8.20723237957248,0.650602214813519,4.13823787980251,5.22180176435513,9.0422890701429,9.86529237694254,13.3238269096244,12.3686276418842,21.7310831420773,0,0.378212160335639,0.175951124163949,0,0,0,0.205782136407943,0,0,0,0,0,0.234526059981096,0,0.23674473558521,0,0.308534225774757,0,0,0,0.493679549740441,0.164167464079095,0,0,0.219550115291051,0.402619256281115,171.1760181312,66.8879980465349,0.330418782983798,1.85115396664481,0.853153002140936,1.16118335930219,1.54640953586512,1.81515172161008,1.55664630691409,1.90225626112559,2.84717436926707,3.12928013975621,3.77002813200404,2.98434708061726,3.50935356814416,4.49409704327111,2.16138049874694,1.39398891278057,0.379335801906163,1.5994791765362,0,0.203651327845314,0.581857461502877,0.280543279561274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0.568474235311454,0,0.678980343100753,0.469380496577004,0.335012514883631,0.238043640886014,0.390267295715598,0,0,0,0.163863314715738,0.518054945597687,0.578596234326046,0,0,0,0,113.509267121369,112.640430815107,5.57378814280696,0,13.8823616543153,17.1793047490521,18.5264122050207,3.58453196928828,7.5751549188014,9.05844898524264,13.7635638569464,15.4895604692995,20.5549644532192,109.249247583414,0,0,0,0,0,0.485561272309963,0.302323556964751,0.565815239267694,0,0.922305443831782,1.55056975900933,0.727067458955011,1.06949213515416,2.21225730555071,0,0,67.0666023334962,2.16073312837572,0.905510786479282,4.07240366560025,14.896579625951,16.0531935841863,18.4294903074375,5.17590413494819,0,0,5.07215315526412,0,0.161464426695906,0.120625849856312,0,0.164140899745061,3.78925087618806,95.1231799313915,0,0.206386867963223,0,0,0,0,0,0,0,3.81868247206045,1.26534397432454,2.84647253977588,3.34816556547584,1.88179466413022,1.52853794622324,1.48350781023303,2.97552440611209,4.18809507174447,2.07383957266869,0,0,0,0,0,0.387479470433193,0.337912250981556,0.117357238645754,0,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0.680191150845634,0,0,0,2.51146472241848,0,0,0,0,176.767326739142,179.526842237799,184.472355327486,135.248454504482,160.994392146101,184.316110963087,178.205940061197,141.400857812405,166.303264097203,164.130018825327,8.82192454465502,18.3551441764474,15.7074917293803,9.23805524859517,20.1228636122863,14.3397936591011,17.335244768526,14.6284890639615,15.0832028508153,14.9091354940641,15.2087579934144,16.0332390178165,12.735245015904,16.2623887108368,16.1393667765273,14.2888107384922,15.6443840025555,11.9603716687497,13.5988347265091,13.8366984926333,10.9718160763333,12.7782580434723,14.7830437767339,12.6451382470126,12.516547595239,12.8614203995348,11.7073902638574,12.3642764375786,11.81495790459,14.5896990631012,13.9989321386525,11.9190423674432,14.3230865109391,14.7189999126668,11.7673032698496,19.7350356570977,10.5269223800434,9.23945532407683,4.97349663378993,4.19123696327079,5.33296021926969
|phase1_expression=2.24208385946712,0,0,0.30246421130683,0,1.6787927191189,1.16806320297763,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,23.7270779521485,0,0,0.159992422793407,0.22940928106717,0.57423196411502,0.430761996159075,0.215471232685889,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0,1.52617609466313,0.219686182734472,0,0.139986421625363,1.43752564364972,0,0,0,0.257259436035947,0,0.515672092277442,87.6030275522058,97.334340186054,78.5950940347662,0,0,0,0,0,0,0,71.4421428805411,48.6021377994086,68.7762623619019,33.1355141908412,36.6641777979678,59.4080376192527,44.4722985524617,41.3648453974509,183.893521268979,212.216355897582,216.585211891303,94.9581271657396,108.321370025253,110.433634558033,105.810356621523,159.824581248997,161.049353156758,76.3088036376799,78.873911162703,93.7589212501262,1.21161909333094,3.85414956544606,0.289864488701678,0,0,0,0,0,5.75822122540183,0,0,0,3.66192891419369,0,0,0,0,0,0,5.25245846707676,0,36.8136504880765,10.9295755862666,14.6143429589828,11.992005857315,23.8141772073144,27.2805800554835,15.5826573248798,0.247194967734374,0.86759614151947,0,0,0.220841518460394,0,3.72783522436244,98.3743477958798,115.824028867841,1.53274233125155,0,0,0,196.075946980913,132.675174817402,76.5235004367344,172.433725630738,173.886510984625,203.840071712928,193.229344313699,0.203678727700633,0,0,8.20723237957248,0.650602214813519,4.13823787980251,5.22180176435513,9.0422890701429,9.86529237694254,13.3238269096244,12.3686276418842,21.7310831420773,0,0.378212160335639,0.175951124163949,0,0,0,0.205782136407943,0,0,0,0,0,0.234526059981096,0,0.23674473558521,0,0.308534225774757,0,0,0,0.493679549740441,0.164167464079095,0,0,0.219550115291051,0.402619256281115,171.1760181312,66.8879980465349,0.330418782983798,1.85115396664481,0.853153002140936,1.16118335930219,1.54640953586512,1.81515172161008,1.55664630691409,1.90225626112559,2.84717436926707,3.12928013975621,3.77002813200404,2.98434708061726,3.50935356814416,4.49409704327111,2.16138049874694,1.39398891278057,0.379335801906163,1.5994791765362,0,0.203651327845314,0.581857461502877,0.280543279561274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,0.568474235311454,0,0.678980343100753,0.469380496577004,0.335012514883631,0.238043640886014,0.390267295715598,0,0,0,0.163863314715738,0.518054945597687,0.578596234326046,0,0,0,0,113.509267121369,112.640430815107,5.57378814280696,0,13.8823616543153,17.1793047490521,18.5264122050207,3.58453196928828,7.5751549188014,9.05844898524264,13.7635638569464,15.4895604692995,20.5549644532192,109.249247583414,0,0,0,0,0,0.485561272309963,0.302323556964751,0.565815239267694,0,0.922305443831782,1.55056975900933,0.727067458955011,1.06949213515416,2.21225730555071,0,0,67.0666023334962,2.16073312837572,0.905510786479282,4.07240366560025,14.896579625951,16.0531935841863,18.4294903074375,5.17590413494819,0,0,5.07215315526412,0,0.161464426695906,0.120625849856312,0,0.164140899745061,3.78925087618806,95.1231799313915,0,0.206386867963223,0,0,0,0,0,0,0,3.81868247206045,1.26534397432454,2.84647253977588,3.34816556547584,1.88179466413022,1.52853794622324,1.48350781023303,2.97552440611209,4.18809507174447,2.07383957266869,0,0,0,0,0,0.387479470433193,0.337912250981556,0.117357238645754,0,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0.680191150845634,0,0,0,2.51146472241848,0,0,0,0,176.767326739142,179.526842237799,184.472355327486,135.248454504482,160.994392146101,184.316110963087,178.205940061197,141.400857812405,166.303264097203,164.130018825327,8.82192454465502,18.3551441764474,15.7074917293803,9.23805524859517,20.1228636122863,14.3397936591011,17.335244768526,14.6284890639615,15.0832028508153,14.9091354940641,15.2087579934144,16.0332390178165,12.735245015904,16.2623887108368,16.1393667765273,14.2888107384922,15.6443840025555,11.9603716687497,13.5988347265091,13.8366984926333,10.9718160763333,12.7782580434723,14.7830437767339,12.6451382470126,12.516547595239,12.8614203995348,11.7073902638574,12.3642764375786,11.81495790459,14.5896990631012,13.9989321386525,11.9190423674432,14.3230865109391,14.7189999126668,11.7673032698496,19.7350356570977,10.5269223800434,9.23945532407683,4.97349663378993,4.19123696327079,5.33296021926969
|short_description=p1@Rab3c
|short_description=p1@Rab3c
}}
}}

Latest revision as of 02:32, 27 September 2015

Short description:p1@Rab3c
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Rab3c_5end
Coexpression cluster:MCL_coexpression_mm9:1
Association with transcript: 0bp_to_ENSMUST00000167824, ENSMUST00000170993, NM_023852, uc007rvo.2_5end
EntrezGene:Rab3c
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Rab3c

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G72.24
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.30
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I71.68
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I81.17
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.33
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A323.73
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.16
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.23
GP2+ M cell, pool1.CNhs13228.11845-124H90.57
GP2+ M cell, pool2.CNhs13231.11846-124I10.43
GP2+ M cell, pool3.CNhs13240.11847-124I20.22
Ileum epithelium, pool1.CNhs13199.10252-104B90.19
Ileum epithelium, pool2.CNhs13232.10253-104C10.25
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.22
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.29
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.13
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.10
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.18
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C21.53
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.22
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.14
Mouse Astrocytes, donor3.CNhs12107.11633-122C41.44
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.26
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.52
Mouse Granule cells, donor1.CNhs12131.11713-123C387.60
Mouse Granule cells, donor2.CNhs12357.11731-123E397.33
Mouse Granule cells, donor3.CNhs12108.11636-122C778.60
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D571.44
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F548.60
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D968.78
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F133.14
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D536.66
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D259.41
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F244.47
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D641.36
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D3183.89
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F3212.22
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D7216.59
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D494.96
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F4108.32
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D8110.43
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E4105.81
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E5159.82
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I6161.05
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D676.31
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F678.87
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E193.76
Mouse Schwann, donor1.CNhs12507.11728-123D91.21
Mouse Schwann, donor2.CNhs12573.11746-123F93.85
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.29
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A75.76
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G63.66
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B65.25
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D736.81
adrenal gland, embryo E14.CNhs11038.406-44C510.93
adrenal gland, embryo E16.CNhs11004.1254-43D614.61
adrenal gland, embryo E17.CNhs11043.1263-45I111.99
adrenal gland, embryo E18.CNhs11026.1262-18F523.81
adrenal gland, neonate N00.CNhs11191.1311-23C127.28
adrenal gland, neonate N25.CNhs11223.1377-27I315.58
amnion, adult pregnant day17.5.CNhs10488.583-22A80.25
aorta, adult.CNhs10498.46-23H10.87
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.22
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H43.73
cerebellum, adult.CNhs10494.15-8B298.37
cerebellum, neonate N30.CNhs11135.1395-42I2115.82
colon, adult.CNhs10468.36-18H71.53
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A4196.08
corpus striatum, adult.CNhs10487.19-21D8132.68
corpus striatum, neonate N00.CNhs11226.630-43F176.52
cortex, adult.CNhs10473.12-14D5172.43
cortex, neonate N30.CNhs11107.1392-42F2173.89
diencephalon, adult.CNhs10482.20-12F2203.84
diencephalon, neonate N30.CNhs11201.1388-42B2193.23
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.20
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.00
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G48.21
eyeball, embryo E12.CNhs11016.345-16C60.65
eyeball, embryo E14.CNhs10521.399-16E24.14
eyeball, embryo E15.CNhs10593.426-16C95.22
eyeball, embryo E17.CNhs11023.1261-18D49.04
eyeball, neonate N00.CNhs11207.633-15C69.87
eyeball, neonate N01.CNhs11140.1532-43E713.32
eyeball, neonate N02.CNhs11205.1551-44G812.37
eyeball, neonate N16.CNhs11188.777-19A221.73
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.38
forelimb, embryo E13.CNhs10589.384-1E20.18
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.00
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.21
gonad, embryo E13.CNhs11044.1564-45I60.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.00
heart, embryo E12.CNhs11015.353-12F50.23
heart, embryo E13.CNhs11013.376-3I90.00
heart, embryo E14.CNhs10597.403-26D40.24
heart, embryo E15.CNhs11017.431-16C80.00
heart, embryo E16.CNhs11021.457-17C60.31
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E30.00
heart, neonate N03.CNhs11221.1349-25I20.49
heart, neonate N10.CNhs11118.749-24G10.16
heart, neonate N16.CNhs11209.782-15G10.00
heart, neonate N20.CNhs11127.821-26I60.00
heart, neonate N25.CNhs11196.1351-25D30.22
heart, neonate N30.CNhs11202.1390-42D20.40
hippocampus, adult.CNhs10478.13-16E8171.18
hippocampus, neonate N00.CNhs11228.627-43G166.89
intestinal mucosa, adult.CNhs10506.860-29I30.33
intestine, adult.CNhs10496.178-9A31.85
intestine, embryo E12.CNhs11019.1251-16I50.85
intestine, embryo E13.CNhs11010.381-16D51.16
intestine, embryo E15.CNhs10602.976-16D81.55
intestine, embryo E16.CNhs10585.463-22H41.82
intestine, embryo E17.CNhs10582.482-18D31.56
intestine, embryo E18.CNhs10526.1289-20F71.90
intestine, neonate N00.CNhs11126.644-26D12.85
intestine, neonate N01.CNhs11192.1322-23E93.13
intestine, neonate N06.CNhs11102.688-20B83.77
intestine, neonate N07.CNhs11095.720-20F22.98
intestine, neonate N10.CNhs11098.755-23A53.51
intestine, neonate N20.CNhs11187.827-18D14.49
intestine, neonate N25.CNhs11121.1352-25E32.16
intestine, neonate N30.CNhs11131.1384-42G11.39
kidney, embryo E14.CNhs10606.411-4I90.38
kidney, embryo E15.CNhs10997.434-16F81.60
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.20
kidney, embryo E18.CNhs11001.1288-20C70.58
kidney, neonate N00.CNhs11214.646-21G70.28
kidney, neonate N10.CNhs11206.758-6D50.00
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.00
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.18
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.18
lung, embryo E12.CNhs10522.354-16G20.57
lung, embryo E14.CNhs10604.404-26F80.00
lung, embryo E15.CNhs11020.432-17C50.68
lung, embryo E16.CNhs10998.458-17B60.47
lung, embryo E17.CNhs10605.480-44A60.34
lung, embryo E18.CNhs10583.1287-20I60.24
lung, neonate N00.CNhs11224.640-42C60.39
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A30.00
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.16
lung, neonate N25.CNhs11119.1359-25C70.52
lung, neonate N30.CNhs11133.1394-42H20.58
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C2113.51
medulla oblongata, neonate N30.CNhs11200.1396-42A3112.64
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C75.57
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E113.88
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E217.18
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E318.53
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D73.58
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D87.58
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D99.06
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D413.76
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D515.49
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D620.55
olfactory brain, adult.CNhs10489.18-22I9109.25
ovary, adult.CNhs10507.91-2I70.00
ovary, embryo E18.CNhs11040.505-44H70.00
ovary, neonate N00.CNhs11217.1299-22I40.00
oviduct, adult pregnant day01.CNhs10500.988-6G60.00
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.49
pancreas, embryo E15.CNhs11042.1556-45F20.30
pancreas, embryo E16.CNhs11003.460-26E50.57
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.92
pancreas, neonate N00.CNhs11105.645-26G91.55
pancreas, neonate N01.CNhs11138.1531-43D70.73
pancreas, neonate N02.CNhs11139.1539-43D81.07
pancreas, neonate N16.CNhs11136.787-43B62.21
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G867.07
pituitary gland, embryo E12.CNhs11018.346-16E62.16
pituitary gland, embryo E13.CNhs11009.370-44C70.91
pituitary gland, embryo E14.CNhs11037.398-44A54.07
pituitary gland, embryo E15.CNhs10592.427-16B914.90
pituitary gland, embryo E16.CNhs11036.449-43F616.05
pituitary gland, embryo E17.CNhs11039.1265-44F518.43
pituitary gland, neonate N00.CNhs11190.1308-22E95.18
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F85.07
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.16
skin, neonate N03.CNhs11215.662-22H30.12
skin, neonate N06.CNhs11097.693-20I50.00
skin, neonate N10.CNhs11108.762-6C40.16
small intestine, neonate N16.CNhs11114.790-21I13.79
spinal cord, adult.CNhs10505.24-13C995.12
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.21
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H63.82
stomach, embryo E12.CNhs10588.356-43E31.27
stomach, embryo E15.CNhs10603.1252-16G82.85
stomach, embryo E16.CNhs11022.459-17D43.35
stomach, embryo E17.CNhs11006.1035-18D51.88
stomach, embryo E18.CNhs10999.1286-20C61.53
stomach, neonate N03.CNhs11193.1340-24B81.48
stomach, neonate N07.CNhs11210.718-18A92.98
stomach, neonate N25.CNhs11104.1355-25E44.19
stomach, neonate N30.CNhs11134.1386-42I12.07
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.00
testis, embryo E17.CNhs11029.486-18I50.39
testis, embryo E18.CNhs11027.503-18G50.34
testis, neonate N00.CNhs11189.1300-22B70.12
testis, neonate N07.CNhs11222.726-26I40.00
testis, neonate N10.CNhs11204.763-44D90.10
testis, neonate N20.CNhs11110.839-18H30.24
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.20
thymus, embryo E15.CNhs11005.430-45I20.10
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.10
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.68
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E42.51
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.00
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A1176.77
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A2179.53
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A3184.47
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D7135.25
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A4160.99
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A5184.32
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A6178.21
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A7141.40
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A8166.30
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A9164.13
whole body, embryo E11.CNhs11014.324-5I88.82
whole body, embryo E12.CNhs10587.857-27C918.36
whole body, embryo E13.CNhs10512.372-23H215.71
whole body, embryo E14.5.CNhs10578.420-27D29.24
whole body, embryo E14.CNhs10519.395-14B120.12
whole body, embryo E16.CNhs10514.453-14F214.34
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G517.34
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G514.63
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G515.08
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G514.91
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G515.21
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G516.03
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G512.74
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G516.26
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G516.14
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G514.29
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G515.64
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G511.96
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G513.60
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G513.84
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G510.97
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G512.78
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G514.78
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G512.65
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G512.52
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G512.86
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G511.71
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G512.36
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G511.81
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G514.59
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G514.00
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G511.92
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G514.32
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G514.72
whole body, embryo E17.5.CNhs10513.490-9F911.77
whole body, embryo E17.CNhs10517.475-3I519.74
whole body, embryo E18.CNhs10516.493-3B310.53
whole body, neonate N00.CNhs10525.657-19C29.24
whole body, neonate N01.CNhs10576.659-23C64.97
whole body, neonate N06.CNhs10515.692-21D14.19
whole body, neonate N10.CNhs10518.761-6B45.33





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
neuron3.43e-1833
neuronal stem cell3.43e-1833
neuroblast3.43e-1833
electrically signaling cell3.43e-1833
CNS neuron (sensu Vertebrata)8.24e-1623
neuroblast (sensu Vertebrata)8.24e-1623
ectodermal cell3.56e-1344
neurectodermal cell3.56e-1344
electrically responsive cell3.80e-1339
electrically active cell3.80e-1339
neural cell4.42e-1343

Uber anatomy
Ontology termp-valuen
nervous system5.43e-3375
central nervous system5.92e-3373
neurectoderm2.48e-2964
neural plate2.48e-2964
presumptive neural plate2.48e-2964
regional part of nervous system1.04e-2854
ectoderm-derived structure1.19e-2795
ectoderm1.19e-2795
presumptive ectoderm1.19e-2795
neural tube1.12e-2652
neural rod1.12e-2652
future spinal cord1.12e-2652
neural keel1.12e-2652
ecto-epithelium5.71e-2473
brain1.64e-2347
future brain1.64e-2347
regional part of brain8.75e-2346
pre-chordal neural plate6.06e-2249
anterior neural tube5.52e-2140
gray matter1.63e-2034
regional part of forebrain4.04e-2039
forebrain4.04e-2039
future forebrain4.04e-2039
structure with developmental contribution from neural crest5.92e-2092
brain grey matter1.60e-1729
regional part of telencephalon1.60e-1729
telencephalon1.60e-1729
cerebral cortex4.61e-1221
cerebral hemisphere4.61e-1221
pallium4.61e-1221
regional part of cerebral cortex1.22e-0917
occipital lobe4.35e-0910
visual cortex4.35e-0910
neocortex4.35e-0910
basal ganglion9.69e-078
nuclear complex of neuraxis9.69e-078
aggregate regional part of brain9.69e-078
collection of basal ganglia9.69e-078
cerebral subcortex9.69e-078
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