Personal tools

FFCP PHASE1:Mm9::chr5:117041791..117041802,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=68955
|EntrezGene=68955
|HGNC=
|HGNC=
|MCL_coexpression_id=1
|TSSclassifier=NA
|UniProt=Q8BKA3
|UniProt=Q8BKA3
|association_with_transcript=23bp_to_ENSMUST00000076124,NM_026886,uc008zfc.1,uc008zfd.1_5end
|association_with_transcript=23bp_to_ENSMUST00000076124,NM_026886,uc008zfc.1,uc008zfd.1_5end
|cluster_id=chr5:117041791..117041802,-
|description=CAGE_peak_4_at_Srrm4_5end
|description=CAGE_peak_4_at_Srrm4_5end
|id=chr5:117041791..117041802,-
|id=chr5:117041791..117041802,-
|ontology_enrichment_celltype=CL:0000117!1.65e-18!23;CL:0000337!1.65e-18!23;CL:0000540!2.22e-15!33;CL:0000047!2.22e-15!33;CL:0000031!2.22e-15!33;CL:0000404!2.22e-15!33;CL:0000393!1.92e-11!39;CL:0000211!1.92e-11!39;CL:0000221!5.38e-11!44;CL:0000133!5.38e-11!44;CL:0002319!8.80e-11!43;CL:0000055!6.37e-08!50
|ontology_enrichment_celltype=CL:0000117!1.65e-18!23;CL:0000337!1.65e-18!23;CL:0000540!2.22e-15!33;CL:0000047!2.22e-15!33;CL:0000031!2.22e-15!33;CL:0000404!2.22e-15!33;CL:0000393!1.92e-11!39;CL:0000211!1.92e-11!39;CL:0000221!5.38e-11!44;CL:0000133!5.38e-11!44;CL:0002319!8.80e-11!43;CL:0000055!6.37e-08!50
|ontology_enrichment_celltype_v019_2=CL:0000117,1.98e-29,23;CL:0000337,1.98e-29,23;CL:0000540,3.68e-20,33;CL:0000047,3.68e-20,33;CL:0000031,3.68e-20,33;CL:0000404,3.68e-20,33;CL:0000393,5.10e-16,39;CL:0000211,5.10e-16,39;CL:0002319,6.49e-14,43;CL:0000221,1.89e-13,44;CL:0000133,1.89e-13,44;CL:0002609,6.00e-09,6
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002346!3.16e-35!71;UBERON:0003075!3.16e-35!71;UBERON:0007284!3.16e-35!71;UBERON:0000033!6.81e-32!63;UBERON:0004121!8.08e-32!102;UBERON:0000924!8.08e-32!102;UBERON:0006601!8.08e-32!102;UBERON:0000073!1.27e-31!75;UBERON:0001016!1.27e-31!75;UBERON:0001017!3.58e-31!73;UBERON:0005743!3.58e-31!73;UBERON:0001049!4.74e-30!52;UBERON:0005068!4.74e-30!52;UBERON:0006241!4.74e-30!52;UBERON:0007135!4.74e-30!52;UBERON:0000955!3.75e-29!50;UBERON:0006238!3.75e-29!50;UBERON:0002616!3.48e-28!49;UBERON:0003056!6.17e-28!49;UBERON:0002020!1.32e-25!34;UBERON:0003080!2.54e-24!40;UBERON:0002780!1.83e-23!39;UBERON:0001890!1.83e-23!39;UBERON:0006240!1.83e-23!39;UBERON:0002791!4.16e-22!29;UBERON:0003528!4.16e-22!29;UBERON:0001893!4.16e-22!29;UBERON:0007811!6.77e-18!86;UBERON:0000956!6.54e-16!21;UBERON:0001869!6.54e-16!21;UBERON:0000203!6.54e-16!21;UBERON:0000153!9.59e-15!94;UBERON:0002619!1.41e-12!17;UBERON:0002021!6.21e-11!10;UBERON:0000411!6.21e-11!10;UBERON:0001950!6.21e-11!10;UBERON:0002420!2.46e-07!8;UBERON:0007245!2.46e-07!8;UBERON:0010009!2.46e-07!8;UBERON:0010011!2.46e-07!8;UBERON:0000454!2.46e-07!8
|ontology_enrichment_uberon=UBERON:0002346!3.16e-35!71;UBERON:0003075!3.16e-35!71;UBERON:0007284!3.16e-35!71;UBERON:0000033!6.81e-32!63;UBERON:0004121!8.08e-32!102;UBERON:0000924!8.08e-32!102;UBERON:0006601!8.08e-32!102;UBERON:0000073!1.27e-31!75;UBERON:0001016!1.27e-31!75;UBERON:0001017!3.58e-31!73;UBERON:0005743!3.58e-31!73;UBERON:0001049!4.74e-30!52;UBERON:0005068!4.74e-30!52;UBERON:0006241!4.74e-30!52;UBERON:0007135!4.74e-30!52;UBERON:0000955!3.75e-29!50;UBERON:0006238!3.75e-29!50;UBERON:0002616!3.48e-28!49;UBERON:0003056!6.17e-28!49;UBERON:0002020!1.32e-25!34;UBERON:0003080!2.54e-24!40;UBERON:0002780!1.83e-23!39;UBERON:0001890!1.83e-23!39;UBERON:0006240!1.83e-23!39;UBERON:0002791!4.16e-22!29;UBERON:0003528!4.16e-22!29;UBERON:0001893!4.16e-22!29;UBERON:0007811!6.77e-18!86;UBERON:0000956!6.54e-16!21;UBERON:0001869!6.54e-16!21;UBERON:0000203!6.54e-16!21;UBERON:0000153!9.59e-15!94;UBERON:0002619!1.41e-12!17;UBERON:0002021!6.21e-11!10;UBERON:0000411!6.21e-11!10;UBERON:0001950!6.21e-11!10;UBERON:0002420!2.46e-07!8;UBERON:0007245!2.46e-07!8;UBERON:0010009!2.46e-07!8;UBERON:0010011!2.46e-07!8;UBERON:0000454!2.46e-07!8
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.38e-48,54;UBERON:0001049,8.63e-45,52;UBERON:0005068,8.63e-45,52;UBERON:0006241,8.63e-45,52;UBERON:0007135,8.63e-45,52;UBERON:0001017,4.42e-44,73;UBERON:0002346,6.75e-44,64;UBERON:0003075,6.75e-44,64;UBERON:0007284,6.75e-44,64;UBERON:0001016,1.48e-42,75;UBERON:0002020,5.20e-42,34;UBERON:0000955,3.93e-39,47;UBERON:0006238,3.93e-39,47;UBERON:0004121,9.68e-39,95;UBERON:0000924,9.68e-39,95;UBERON:0006601,9.68e-39,95;UBERON:0002616,1.32e-37,46;UBERON:0010371,6.21e-37,73;UBERON:0003528,3.14e-36,29;UBERON:0002791,3.14e-36,29;UBERON:0001893,3.14e-36,29;UBERON:0003056,3.85e-36,49;UBERON:0003080,1.33e-34,40;UBERON:0002780,3.15e-33,39;UBERON:0001890,3.15e-33,39;UBERON:0006240,3.15e-33,39;UBERON:0010314,1.03e-26,92;UBERON:0000956,5.52e-26,21;UBERON:0001869,5.52e-26,21;UBERON:0000203,5.52e-26,21;UBERON:0002619,1.79e-20,17;UBERON:0002021,5.96e-17,10;UBERON:0000411,5.96e-17,10;UBERON:0001950,5.96e-17,10;UBERON:0000025,3.91e-14,114;UBERON:0004111,1.79e-12,122;UBERON:0002420,4.74e-11,8;UBERON:0007245,4.74e-11,8;UBERON:0010009,4.74e-11,8;UBERON:0010011,4.74e-11,8;UBERON:0000454,4.74e-11,8;UBERON:0003076,5.85e-10,12;UBERON:0003057,5.85e-10,12;UBERON:0011216,1.63e-08,194;UBERON:0000483,2.24e-08,174;UBERON:0000119,3.79e-08,176;UBERON:0000369,4.89e-08,5;UBERON:0002435,4.89e-08,5;UBERON:0000204,4.89e-08,5;UBERON:0010082,4.89e-08,5;UBERON:0002240,1.03e-07,6;UBERON:0005174,1.03e-07,6;UBERON:0001137,1.03e-07,6
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04632921719196,5.28990979272033,3.1691570175309,0,0,0,0,0,0,0,3.00699875694585,4.45519596494579,3.36519938162211,2.28520787523043,1.10434270475807,3.1847607795888,3.06705507258356,3.67687514644008,5.50579404996943,3.57524546638526,2.15049146558741,4.2203612073662,4.57438218012048,3.64639359389732,1.3959149950069,2.8138130501584,2.29197371665215,3.24091444021034,2.84743361598206,2.05039390407831,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0.148442139064825,0.173485326766136,0.304465478312141,0.230615497256059,0.301445281105245,0.587943535678524,0,0,0,0,0,0,0,0,4.39171195517321,3.77004072264219,0,0,0,0,3.74476598512057,2.28750301409313,4.27224797183739,5.56237824615285,6.13717097592793,3.1168206683934,4.38051410282946,0,0,0,1.26265113531884,0.390361328888111,0,0.180062129805349,0.452114453507145,2.38127747029647,2.69038812598185,1.78033276663485,2.06962696591213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,7.57043814830858,5.55684906848136,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44495530989013,2.81308047821288,0,0,0.315508219416257,0,0.215423397732799,0,0,0,0,1.16902343164525,0.395287777946524,4.4984984299053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02131881726136,0,0.129358683782755,0.214337035031592,0,0.178368817602071,0.164549020602121,1.522324745573,0,0,0,0,0,0,0,0,0,2.22510362412612,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.471277639256,4.14292712856459,9.73922372846974,6.01486138202907,4.11049511862385,7.55393897389701,5.40018000185445,4.5032120322422,7.25027854374727,9.31968561153276,0.62272408550506,0.399024873401031,0.512200817262403,1.70174701947806,1.46729213839588,0.367687016900028,0.44449345560323,1.23621034343337,0,0.505394423527595,0,1.13175804831646,0.37456602987953,0.512201219238954,0.516919220600519,0.476293691283074,0.347652977834566,0.38581844092741,0,1.03039244094078,0.685738504770831,0.887379030796687,0.953744759789284,1.45346416632329,0.376437521661322,0.507687647350059,0.182927972872773,0.526139422875686,0.543216455383447,0.561142271657738,0.711810108745045,0.394017929502254,0.818462086339379,0.154936841185966,0.192906610981141,0.999242311751784,0,0.644613162144895,0,0,0
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.04632921719196,5.28990979272033,3.1691570175309,0,0,0,0,0,0,0,3.00699875694585,4.45519596494579,3.36519938162211,2.28520787523043,1.10434270475807,3.1847607795888,3.06705507258356,3.67687514644008,5.50579404996943,3.57524546638526,2.15049146558741,4.2203612073662,4.57438218012048,3.64639359389732,1.3959149950069,2.8138130501584,2.29197371665215,3.24091444021034,2.84743361598206,2.05039390407831,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0.148442139064825,0.173485326766136,0.304465478312141,0.230615497256059,0.301445281105245,0.587943535678524,0,0,0,0,0,0,0,0,4.39171195517321,3.77004072264219,0,0,0,0,3.74476598512057,2.28750301409313,4.27224797183739,5.56237824615285,6.13717097592793,3.1168206683934,4.38051410282946,0,0,0,1.26265113531884,0.390361328888111,0,0.180062129805349,0.452114453507145,2.38127747029647,2.69038812598185,1.78033276663485,2.06962696591213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,7.57043814830858,5.55684906848136,0,0,0.213288250535234,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44495530989013,2.81308047821288,0,0,0.315508219416257,0,0.215423397732799,0,0,0,0,1.16902343164525,0.395287777946524,4.4984984299053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02131881726136,0,0.129358683782755,0.214337035031592,0,0.178368817602071,0.164549020602121,1.522324745573,0,0,0,0,0,0,0,0,0,2.22510362412612,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.471277639256,4.14292712856459,9.73922372846974,6.01486138202907,4.11049511862385,7.55393897389701,5.40018000185445,4.5032120322422,7.25027854374727,9.31968561153276,0.62272408550506,0.399024873401031,0.512200817262403,1.70174701947806,1.46729213839588,0.367687016900028,0.44449345560323,1.23621034343337,0,0.505394423527595,0,1.13175804831646,0.37456602987953,0.512201219238954,0.516919220600519,0.476293691283074,0.347652977834566,0.38581844092741,0,1.03039244094078,0.685738504770831,0.887379030796687,0.953744759789284,1.45346416632329,0.376437521661322,0.507687647350059,0.182927972872773,0.526139422875686,0.543216455383447,0.561142271657738,0.711810108745045,0.394017929502254,0.818462086339379,0.154936841185966,0.192906610981141,0.999242311751784,0,0.644613162144895,0,0,0
|short_description=p4@Srrm4
|short_description=p4@Srrm4
}}
}}

Latest revision as of 18:02, 1 October 2015

Short description:p4@Srrm4
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_4_at_Srrm4_5end
Coexpression cluster:MCL_coexpression_mm9:1
Association with transcript: 23bp_to_ENSMUST00000076124, NM_026886, uc008zfc.1, uc008zfd.1_5end
EntrezGene:Srrm4
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p4@Srrm4

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.32
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.43
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C34.05
Mouse Granule cells, donor2.CNhs12357.11731-123E35.29
Mouse Granule cells, donor3.CNhs12108.11636-122C73.17
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D53.01
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F54.46
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D93.37
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F12.29
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D51.10
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D23.18
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F23.07
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D63.68
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D35.51
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F33.58
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D72.15
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D44.22
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F44.57
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D83.65
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E41.40
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E52.81
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I62.29
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D63.24
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F62.85
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E12.05
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.08
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.14
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.14
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.23
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.15
adrenal gland, embryo E14.CNhs11038.406-44C50.17
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.23
adrenal gland, embryo E18.CNhs11026.1262-18F50.30
adrenal gland, neonate N00.CNhs11191.1311-23C10.59
adrenal gland, neonate N25.CNhs11223.1377-27I30.00
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.00
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B24.39
cerebellum, neonate N30.CNhs11135.1395-42I23.77
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A43.74
corpus striatum, adult.CNhs10487.19-21D82.29
corpus striatum, neonate N00.CNhs11226.630-43F14.27
cortex, adult.CNhs10473.12-14D55.56
cortex, neonate N30.CNhs11107.1392-42F26.14
diencephalon, adult.CNhs10482.20-12F23.12
diencephalon, neonate N30.CNhs11201.1388-42B24.38
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.00
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.00
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G41.26
eyeball, embryo E12.CNhs11016.345-16C60.39
eyeball, embryo E14.CNhs10521.399-16E20.00
eyeball, embryo E15.CNhs10593.426-16C90.18
eyeball, embryo E17.CNhs11023.1261-18D40.45
eyeball, neonate N00.CNhs11207.633-15C62.38
eyeball, neonate N01.CNhs11140.1532-43E72.69
eyeball, neonate N02.CNhs11205.1551-44G81.78
eyeball, neonate N16.CNhs11188.777-19A22.07
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.00
forelimb, embryo E13.CNhs10589.384-1E20.00
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.00
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I60.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.00
heart, embryo E12.CNhs11015.353-12F50.00
heart, embryo E13.CNhs11013.376-3I90.18
heart, embryo E14.CNhs10597.403-26D40.00
heart, embryo E15.CNhs11017.431-16C80.00
heart, embryo E16.CNhs11021.457-17C60.00
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E30.00
heart, neonate N03.CNhs11221.1349-25I20.00
heart, neonate N10.CNhs11118.749-24G10.00
heart, neonate N16.CNhs11209.782-15G10.00
heart, neonate N20.CNhs11127.821-26I60.00
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E87.57
hippocampus, neonate N00.CNhs11228.627-43G15.56
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I50.21
intestine, embryo E13.CNhs11010.381-16D50.00
intestine, embryo E15.CNhs10602.976-16D80.00
intestine, embryo E16.CNhs10585.463-22H40.00
intestine, embryo E17.CNhs10582.482-18D30.00
intestine, embryo E18.CNhs10526.1289-20F70.00
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.00
intestine, neonate N06.CNhs11102.688-20B80.00
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.00
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.22
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.00
kidney, embryo E15.CNhs10997.434-16F80.23
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.00
kidney, embryo E18.CNhs11001.1288-20C70.00
kidney, neonate N00.CNhs11214.646-21G70.00
kidney, neonate N10.CNhs11206.758-6D50.00
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.00
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G20.00
lung, embryo E14.CNhs10604.404-26F80.00
lung, embryo E15.CNhs11020.432-17C50.00
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A60.00
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A30.00
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C21.44
medulla oblongata, neonate N30.CNhs11200.1396-42A32.81
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.32
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.22
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D51.17
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.40
olfactory brain, adult.CNhs10489.18-22I94.50
ovary, adult.CNhs10507.91-2I70.00
ovary, embryo E18.CNhs11040.505-44H70.00
ovary, neonate N00.CNhs11217.1299-22I40.00
oviduct, adult pregnant day01.CNhs10500.988-6G60.00
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.00
pancreas, embryo E16.CNhs11003.460-26E50.00
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.00
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G81.02
pituitary gland, embryo E12.CNhs11018.346-16E60.00
pituitary gland, embryo E13.CNhs11009.370-44C70.13
pituitary gland, embryo E14.CNhs11037.398-44A50.21
pituitary gland, embryo E15.CNhs10592.427-16B90.00
pituitary gland, embryo E16.CNhs11036.449-43F60.18
pituitary gland, embryo E17.CNhs11039.1265-44F50.16
pituitary gland, neonate N00.CNhs11190.1308-22E91.52
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.00
skin, neonate N03.CNhs11215.662-22H30.00
skin, neonate N06.CNhs11097.693-20I50.00
skin, neonate N10.CNhs11108.762-6C40.00
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C92.23
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.00
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.14
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.00
stomach, embryo E15.CNhs10603.1252-16G80.20
stomach, embryo E16.CNhs11022.459-17D40.11
stomach, embryo E17.CNhs11006.1035-18D50.21
stomach, embryo E18.CNhs10999.1286-20C60.00
stomach, neonate N03.CNhs11193.1340-24B80.00
stomach, neonate N07.CNhs11210.718-18A90.00
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.00
testis, embryo E17.CNhs11029.486-18I50.00
testis, embryo E18.CNhs11027.503-18G50.00
testis, neonate N00.CNhs11189.1300-22B70.00
testis, neonate N07.CNhs11222.726-26I40.00
testis, neonate N10.CNhs11204.763-44D90.00
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.00
thymus, embryo E15.CNhs11005.430-45I20.00
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.00
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.00
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.00
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A18.47
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A24.14
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A39.74
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D76.01
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A44.11
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A57.55
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A65.40
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A74.50
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A87.25
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A99.32
whole body, embryo E11.CNhs11014.324-5I80.62
whole body, embryo E12.CNhs10587.857-27C90.40
whole body, embryo E13.CNhs10512.372-23H20.51
whole body, embryo E14.5.CNhs10578.420-27D21.70
whole body, embryo E14.CNhs10519.395-14B11.47
whole body, embryo E16.CNhs10514.453-14F20.37
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.44
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G51.24
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.51
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G51.13
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.37
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.51
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.52
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.35
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.39
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G51.03
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.69
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.89
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.95
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G51.45
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.51
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.18
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.53
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.54
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.56
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.71
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.39
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.15
whole body, embryo E17.5.CNhs10513.490-9F90.19
whole body, embryo E17.CNhs10517.475-3I51.00
whole body, embryo E18.CNhs10516.493-3B30.00
whole body, neonate N00.CNhs10525.657-19C20.64
whole body, neonate N01.CNhs10576.659-23C60.00
whole body, neonate N06.CNhs10515.692-21D10.00
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
regional part of nervous system7.38e-4854
neural tube8.63e-4552
neural rod8.63e-4552
future spinal cord8.63e-4552
neural keel8.63e-4552
central nervous system4.42e-4473
neurectoderm6.75e-4464
neural plate6.75e-4464
presumptive neural plate6.75e-4464
nervous system1.48e-4275
gray matter5.20e-4234
brain3.93e-3947
future brain3.93e-3947
ectoderm-derived structure9.68e-3995
ectoderm9.68e-3995
presumptive ectoderm9.68e-3995
regional part of brain1.32e-3746
ecto-epithelium6.21e-3773
brain grey matter3.14e-3629
regional part of telencephalon3.14e-3629
telencephalon3.14e-3629
pre-chordal neural plate3.85e-3649
anterior neural tube1.33e-3440
regional part of forebrain3.15e-3339
forebrain3.15e-3339
future forebrain3.15e-3339
structure with developmental contribution from neural crest1.03e-2692
cerebral cortex5.52e-2621
cerebral hemisphere5.52e-2621
pallium5.52e-2621
regional part of cerebral cortex1.79e-2017
occipital lobe5.96e-1710
visual cortex5.96e-1710
neocortex5.96e-1710
tube3.91e-14114
anatomical conduit1.79e-12122
basal ganglion4.74e-118
nuclear complex of neuraxis4.74e-118
aggregate regional part of brain4.74e-118
collection of basal ganglia4.74e-118
cerebral subcortex4.74e-118
posterior neural tube5.85e-1012
chordal neural plate5.85e-1012
organ system subdivision1.63e-08194
epithelium2.24e-08174
cell layer3.79e-08176
corpus striatum4.89e-085
striatum4.89e-085
ventral part of telencephalon4.89e-085
future corpus striatum4.89e-085
spinal cord1.03e-076
dorsal region element1.03e-076
dorsum1.03e-076
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr5:117041791..117041802,-&oldid=4315315"