FFCP PHASE1:Mm9::chr3:34459282..34459308,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=320478 | |EntrezGene=320478 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=724 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000163261,NR_015580,uc012cor.1_5end | |association_with_transcript=0bp_to_ENSMUST00000163261,NR_015580,uc012cor.1_5end | ||
|cluster_id=chr3:34459282..34459308,+ | |||
|description=CAGE_peak_1_at_Sox2ot_5end | |description=CAGE_peak_1_at_Sox2ot_5end | ||
|id=chr3:34459282..34459308,+ | |id=chr3:34459282..34459308,+ | ||
|ontology_enrichment_celltype=CL:0000221!4.28e-20!44;CL:0000133!4.28e-20!44;CL:0002319!3.14e-19!43;CL:0000117!2.20e-17!23;CL:0000337!2.20e-17!23;CL:0000055!1.82e-14!50;CL:0000540!1.06e-12!33;CL:0000047!1.06e-12!33;CL:0000031!1.06e-12!33;CL:0000404!1.06e-12!33;CL:0000393!3.34e-09!39;CL:0000211!3.34e-09!39;CL:0000333!8.22e-08!10;CL:0000095!8.22e-08!10;CL:0000243!8.22e-08!10;CL:0000123!8.22e-08!10;CL:0000125!8.22e-08!10;CL:0000030!8.22e-08!10;CL:0000339!8.22e-08!10;CL:0002321!1.99e-07!70;CL:0000220!1.99e-07!70 | |ontology_enrichment_celltype=CL:0000221!4.28e-20!44;CL:0000133!4.28e-20!44;CL:0002319!3.14e-19!43;CL:0000117!2.20e-17!23;CL:0000337!2.20e-17!23;CL:0000055!1.82e-14!50;CL:0000540!1.06e-12!33;CL:0000047!1.06e-12!33;CL:0000031!1.06e-12!33;CL:0000404!1.06e-12!33;CL:0000393!3.34e-09!39;CL:0000211!3.34e-09!39;CL:0000333!8.22e-08!10;CL:0000095!8.22e-08!10;CL:0000243!8.22e-08!10;CL:0000123!8.22e-08!10;CL:0000125!8.22e-08!10;CL:0000030!8.22e-08!10;CL:0000339!8.22e-08!10;CL:0002321!1.99e-07!70;CL:0000220!1.99e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.23e-26,23;CL:0000337,4.23e-26,23;CL:0000221,1.67e-24,44;CL:0000133,1.67e-24,44;CL:0002319,3.01e-23,43;CL:0000540,2.03e-17,33;CL:0000047,2.03e-17,33;CL:0000031,2.03e-17,33;CL:0000404,2.03e-17,33;CL:0000393,1.24e-13,39;CL:0000211,1.24e-13,39;CL:0002321,8.34e-12,70;CL:0002609,2.34e-09,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.79e-35!75;UBERON:0001016!3.79e-35!75;UBERON:0004121!2.89e-34!102;UBERON:0000924!2.89e-34!102;UBERON:0006601!2.89e-34!102;UBERON:0001017!4.42e-33!73;UBERON:0005743!4.42e-33!73;UBERON:0000033!6.13e-33!63;UBERON:0001049!2.47e-29!52;UBERON:0005068!2.47e-29!52;UBERON:0006241!2.47e-29!52;UBERON:0007135!2.47e-29!52;UBERON:0002346!1.94e-27!71;UBERON:0003075!1.94e-27!71;UBERON:0007284!1.94e-27!71;UBERON:0000955!7.67e-27!50;UBERON:0006238!7.67e-27!50;UBERON:0002616!1.05e-26!49;UBERON:0003056!1.87e-26!49;UBERON:0002020!2.83e-21!34;UBERON:0003080!2.16e-20!40;UBERON:0002780!1.40e-19!39;UBERON:0001890!1.40e-19!39;UBERON:0006240!1.40e-19!39;UBERON:0007811!2.69e-19!86;UBERON:0002791!1.19e-17!29;UBERON:0003528!1.19e-17!29;UBERON:0001893!1.19e-17!29;UBERON:0000153!8.71e-16!94;UBERON:0000956!4.52e-12!21;UBERON:0001869!4.52e-12!21;UBERON:0000203!4.52e-12!21;UBERON:0003076!2.02e-09!12;UBERON:0003057!2.02e-09!12;UBERON:0002619!2.44e-09!17;UBERON:0000020!4.38e-07!12;UBERON:0001032!4.38e-07!12;UBERON:0004456!4.38e-07!12;UBERON:0002420!7.19e-07!8;UBERON:0007245!7.19e-07!8;UBERON:0010009!7.19e-07!8;UBERON:0010011!7.19e-07!8;UBERON:0000454!7.19e-07!8;UBERON:0000970!7.93e-07!9;UBERON:0000019!7.93e-07!9;UBERON:0000047!7.93e-07!9;UBERON:0004088!7.93e-07!9;UBERON:0002104!7.93e-07!9;UBERON:0001456!7.93e-07!9;UBERON:0003072!7.93e-07!9;UBERON:0003071!7.93e-07!9;UBERON:0004128!7.93e-07!9 | |ontology_enrichment_uberon=UBERON:0000073!3.79e-35!75;UBERON:0001016!3.79e-35!75;UBERON:0004121!2.89e-34!102;UBERON:0000924!2.89e-34!102;UBERON:0006601!2.89e-34!102;UBERON:0001017!4.42e-33!73;UBERON:0005743!4.42e-33!73;UBERON:0000033!6.13e-33!63;UBERON:0001049!2.47e-29!52;UBERON:0005068!2.47e-29!52;UBERON:0006241!2.47e-29!52;UBERON:0007135!2.47e-29!52;UBERON:0002346!1.94e-27!71;UBERON:0003075!1.94e-27!71;UBERON:0007284!1.94e-27!71;UBERON:0000955!7.67e-27!50;UBERON:0006238!7.67e-27!50;UBERON:0002616!1.05e-26!49;UBERON:0003056!1.87e-26!49;UBERON:0002020!2.83e-21!34;UBERON:0003080!2.16e-20!40;UBERON:0002780!1.40e-19!39;UBERON:0001890!1.40e-19!39;UBERON:0006240!1.40e-19!39;UBERON:0007811!2.69e-19!86;UBERON:0002791!1.19e-17!29;UBERON:0003528!1.19e-17!29;UBERON:0001893!1.19e-17!29;UBERON:0000153!8.71e-16!94;UBERON:0000956!4.52e-12!21;UBERON:0001869!4.52e-12!21;UBERON:0000203!4.52e-12!21;UBERON:0003076!2.02e-09!12;UBERON:0003057!2.02e-09!12;UBERON:0002619!2.44e-09!17;UBERON:0000020!4.38e-07!12;UBERON:0001032!4.38e-07!12;UBERON:0004456!4.38e-07!12;UBERON:0002420!7.19e-07!8;UBERON:0007245!7.19e-07!8;UBERON:0010009!7.19e-07!8;UBERON:0010011!7.19e-07!8;UBERON:0000454!7.19e-07!8;UBERON:0000970!7.93e-07!9;UBERON:0000019!7.93e-07!9;UBERON:0000047!7.93e-07!9;UBERON:0004088!7.93e-07!9;UBERON:0002104!7.93e-07!9;UBERON:0001456!7.93e-07!9;UBERON:0003072!7.93e-07!9;UBERON:0003071!7.93e-07!9;UBERON:0004128!7.93e-07!9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.51e-42,95;UBERON:0000924,1.51e-42,95;UBERON:0006601,1.51e-42,95;UBERON:0001016,4.32e-38,75;UBERON:0002346,4.69e-38,64;UBERON:0003075,4.69e-38,64;UBERON:0007284,4.69e-38,64;UBERON:0001017,2.92e-35,73;UBERON:0010371,5.15e-35,73;UBERON:0000073,4.92e-33,54;UBERON:0001049,3.53e-31,52;UBERON:0005068,3.53e-31,52;UBERON:0006241,3.53e-31,52;UBERON:0007135,3.53e-31,52;UBERON:0003056,5.80e-30,49;UBERON:0002020,2.01e-26,34;UBERON:0010314,8.80e-25,92;UBERON:0002616,1.99e-24,46;UBERON:0000955,1.09e-23,47;UBERON:0006238,1.09e-23,47;UBERON:0003080,3.13e-21,40;UBERON:0003528,5.26e-21,29;UBERON:0002791,5.26e-21,29;UBERON:0001893,5.26e-21,29;UBERON:0002780,4.20e-20,39;UBERON:0001890,4.20e-20,39;UBERON:0006240,4.20e-20,39;UBERON:0000956,8.32e-13,21;UBERON:0001869,8.32e-13,21;UBERON:0000203,8.32e-13,21;UBERON:0000020,1.83e-10,12;UBERON:0001032,1.83e-10,12;UBERON:0004456,1.83e-10,12;UBERON:0003076,2.05e-10,12;UBERON:0003057,2.05e-10,12;UBERON:0002420,8.49e-10,8;UBERON:0007245,8.49e-10,8;UBERON:0010009,8.49e-10,8;UBERON:0010011,8.49e-10,8;UBERON:0000454,8.49e-10,8;UBERON:0000970,9.87e-10,9;UBERON:0000019,9.87e-10,9;UBERON:0000047,9.87e-10,9;UBERON:0010312,9.87e-10,9;UBERON:0004088,9.87e-10,9;UBERON:0002104,9.87e-10,9;UBERON:0001456,9.87e-10,9;UBERON:0003072,9.87e-10,9;UBERON:0004128,9.87e-10,9;UBERON:0003071,9.87e-10,9;UBERON:0000033,1.87e-09,13;UBERON:0005085,1.87e-09,13;UBERON:0002619,6.24e-09,17;UBERON:0004111,3.80e-08,122;UBERON:0002240,4.32e-08,6;UBERON:0005174,4.32e-08,6;UBERON:0001137,4.32e-08,6;UBERON:0000025,4.48e-08,114;UBERON:0001444,1.30e-07,11;UBERON:0000369,3.46e-07,5;UBERON:0002435,3.46e-07,5;UBERON:0000204,3.46e-07,5;UBERON:0010082,3.46e-07,5 | |||
|phase1_expression=1.28119077683835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,13.9536100083486,0.659058548203415,0.972149495371417,5.87942970826523,2.87505128729943,0,0,0,0,0,0,3.03474691289397,2.11596391708813,2.53532561402472,0.677689064138264,0,0,0,0,3.89480143673926,5.37905627450176,5.28817022773236,5.26523159493594,4.83747411108179,4.57041575046086,3.09215957332259,11.0241719293459,9.4887016308054,9.19218786610021,2.20231761998777,3.70293280447044,5.22262213071228,4.61602007055678,4.39140689291566,3.12548022334056,2.51264699101243,2.8138130501584,3.20876320331301,5.59794312399969,3.27454865837937,3.16879057903011,9.23859558664845,28.0370487996174,0,0,0,0,0,0,0.280888840263504,0,0,0,7.88723150749411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485300549842228,0,0,0,0.878342391034642,2.30391377494801,0,0,0,0,5.24267237916879,8.23501085073528,5.02617408451458,1.39059456153821,3.3243009452943,7.06479351502504,8.92326946872667,0,0,0,1.68353484709179,1.43132487258974,2.06911893990126,1.62055916824814,3.0140963567143,4.150226448231,4.61209393025459,3.93547243150861,6.98499100995342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57492912559016,6.07137213037778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0.238043640886014,0,0.157635144106191,0,0,0.163863314715738,0,0,0,0,0,0,7.70642831941401,10.0802050469295,0,0.504941854408746,0,0,0,0,0.222798674082394,0.566153061577665,0,0.292255857911312,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,3.24109969256358,1.16422815404479,0.643011105094777,0.532020700926821,0,0,0.913394847343798,0.23467170806371,0,0,0.16488625294148,0,0.120625849856312,0.119372344003136,0.164140899745061,0,9.27126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0.129159823477731,0,0.234714477291508,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0.228620419965,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,1.6942555278512,2.76195141904306,4.58316410751517,2.40594455281163,2.05524755931193,0,4.05013500139084,0.45032120322422,2.26571204492102,0.51776031175182,4.4628559461196,2.79317411380722,1.87806966329548,0.486213434136588,1.25767897576789,0.551530525350042,0.44449345560323,0.824140228955577,0.962757628775446,1.01078884705519,0,1.13175804831646,0.468207537349412,0.768301828858431,0.746661096422973,0.952587382566147,0.695305955669133,0.964546102318525,0,0.441596760403192,1.37147700954166,0.887379030796687,0.953744759789284,1.30811774969096,0.846984423737976,0.846146078916765,0.548783918618318,0.526139422875686,0.543216455383447,1.12228454331548,1.42362021749009,0.985044823755635,0.818462086339379,0.619747364743864,0.578719832943424,0.749431733813838,0.935726433781634,0.644613162144895,0.57386499620653,0.882365676478062,0.927471342481686 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|phase1_expression=1.28119077683835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,13.9536100083486,0.659058548203415,0.972149495371417,5.87942970826523,2.87505128729943,0,0,0,0,0,0,3.03474691289397,2.11596391708813,2.53532561402472,0.677689064138264,0,0,0,0,3.89480143673926,5.37905627450176,5.28817022773236,5.26523159493594,4.83747411108179,4.57041575046086,3.09215957332259,11.0241719293459,9.4887016308054,9.19218786610021,2.20231761998777,3.70293280447044,5.22262213071228,4.61602007055678,4.39140689291566,3.12548022334056,2.51264699101243,2.8138130501584,3.20876320331301,5.59794312399969,3.27454865837937,3.16879057903011,9.23859558664845,28.0370487996174,0,0,0,0,0,0,0.280888840263504,0,0,0,7.88723150749411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485300549842228,0,0,0,0.878342391034642,2.30391377494801,0,0,0,0,5.24267237916879,8.23501085073528,5.02617408451458,1.39059456153821,3.3243009452943,7.06479351502504,8.92326946872667,0,0,0,1.68353484709179,1.43132487258974,2.06911893990126,1.62055916824814,3.0140963567143,4.150226448231,4.61209393025459,3.93547243150861,6.98499100995342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57492912559016,6.07137213037778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0.238043640886014,0,0.157635144106191,0,0,0.163863314715738,0,0,0,0,0,0,7.70642831941401,10.0802050469295,0,0.504941854408746,0,0,0,0,0.222798674082394,0.566153061577665,0,0.292255857911312,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,3.24109969256358,1.16422815404479,0.643011105094777,0.532020700926821,0,0,0.913394847343798,0.23467170806371,0,0,0.16488625294148,0,0.120625849856312,0.119372344003136,0.164140899745061,0,9.27126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0.129159823477731,0,0.234714477291508,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0.228620419965,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,1.6942555278512,2.76195141904306,4.58316410751517,2.40594455281163,2.05524755931193,0,4.05013500139084,0.45032120322422,2.26571204492102,0.51776031175182,4.4628559461196,2.79317411380722,1.87806966329548,0.486213434136588,1.25767897576789,0.551530525350042,0.44449345560323,0.824140228955577,0.962757628775446,1.01078884705519,0,1.13175804831646,0.468207537349412,0.768301828858431,0.746661096422973,0.952587382566147,0.695305955669133,0.964546102318525,0,0.441596760403192,1.37147700954166,0.887379030796687,0.953744759789284,1.30811774969096,0.846984423737976,0.846146078916765,0.548783918618318,0.526139422875686,0.543216455383447,1.12228454331548,1.42362021749009,0.985044823755635,0.818462086339379,0.619747364743864,0.578719832943424,0.749431733813838,0.935726433781634,0.644613162144895,0.57386499620653,0.882365676478062,0.927471342481686 | ||
|short_description=p1@Sox2ot | |short_description=p1@Sox2ot | ||
}} | }} |
Latest revision as of 23:09, 1 October 2015
Short description: | p1@Sox2ot |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sox2ot_5end |
Coexpression cluster: | MCL_coexpression_mm9:724 |
Association with transcript: | 0bp_to_ENSMUST00000163261, NR_015580, uc012cor.1_5end |
EntrezGene: | Sox2ot |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.23e-26 | 23 |
neuroblast (sensu Vertebrata) | 4.23e-26 | 23 |
ectodermal cell | 1.67e-24 | 44 |
neurectodermal cell | 1.67e-24 | 44 |
neural cell | 3.01e-23 | 43 |
neuron | 2.03e-17 | 33 |
neuronal stem cell | 2.03e-17 | 33 |
neuroblast | 2.03e-17 | 33 |
electrically signaling cell | 2.03e-17 | 33 |
electrically responsive cell | 1.24e-13 | 39 |
electrically active cell | 1.24e-13 | 39 |
embryonic cell | 8.34e-12 | 70 |
neuron of cerebral cortex | 2.34e-09 | 6 |