FF:10031-101E4: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	temporal lobe, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10637
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	temporal lobe
dev stage	32-61 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	7090051
catalog number	Cat:636564
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004819

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10637		CAGE		DRX008736		DRR009608

Accession ID Hg19

Library id		BAM		CTSS
CNhs10637		DRZ001033		DRZ002418

Accession ID Hg38

Library id		BAM		CTSS
CNhs10637		DRZ012383		DRZ013768

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.347
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.184
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.431
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0554
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.128
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.529
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.161
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.169
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.149
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.0806
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.104
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0286
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0431
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.323
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0554
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00866
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.149
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0264
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.809
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0286
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0746
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.483
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0554
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0286
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.586
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.225
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0286
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0921
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.453
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0179
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.373
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.169
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0106
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.501
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.255
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.483
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0554
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.169
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.169
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0286
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.745
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.104
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.169
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.397
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0463
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.104
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0286
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10637

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00871
MA0003.1	MA0003.1	0.471
MA0004.1	MA0004.1	0.523
MA0006.1	MA0006.1	0.44
MA0007.1	MA0007.1	0.228
MA0009.1	MA0009.1	0.176
MA0014.1	MA0014.1	0.577
MA0017.1	MA0017.1	0.00699
MA0018.2	MA0018.2	0.0405
MA0019.1	MA0019.1	0.571
MA0024.1	MA0024.1	0.805
MA0025.1	MA0025.1	0.18
MA0027.1	MA0027.1	0.549
MA0028.1	MA0028.1	0.0464
MA0029.1	MA0029.1	0.207
MA0030.1	MA0030.1	0.168
MA0031.1	MA0031.1	0.912
MA0035.2	MA0035.2	0.207
MA0038.1	MA0038.1	0.0518
MA0039.2	MA0039.2	0.265
MA0040.1	MA0040.1	0.383
MA0041.1	MA0041.1	0.143
MA0042.1	MA0042.1	0.63
MA0043.1	MA0043.1	0.357
MA0046.1	MA0046.1	0.394
MA0047.2	MA0047.2	0.095
MA0048.1	MA0048.1	0.0836
MA0050.1	MA0050.1	0.00251
MA0051.1	MA0051.1	0.0784
MA0052.1	MA0052.1	0.0449
MA0055.1	MA0055.1	0.0022
MA0057.1	MA0057.1	0.918
MA0058.1	MA0058.1	0.475
MA0059.1	MA0059.1	0.0869
MA0060.1	MA0060.1	0.178
MA0061.1	MA0061.1	0.00787
MA0062.2	MA0062.2	0.00877
MA0065.2	MA0065.2	0.00141
MA0066.1	MA0066.1	0.0389
MA0067.1	MA0067.1	0.763
MA0068.1	MA0068.1	0.139
MA0069.1	MA0069.1	0.46
MA0070.1	MA0070.1	0.0305
MA0071.1	MA0071.1	0.0644
MA0072.1	MA0072.1	0.603
MA0073.1	MA0073.1	0.569
MA0074.1	MA0074.1	0.241
MA0076.1	MA0076.1	0.124
MA0077.1	MA0077.1	0.175
MA0078.1	MA0078.1	0.932
MA0079.2	MA0079.2	0.274
MA0080.2	MA0080.2	5.27052e-8
MA0081.1	MA0081.1	0.0462
MA0083.1	MA0083.1	0.244
MA0084.1	MA0084.1	0.83
MA0087.1	MA0087.1	0.401
MA0088.1	MA0088.1	0.124
MA0090.1	MA0090.1	0.296
MA0091.1	MA0091.1	0.683
MA0092.1	MA0092.1	0.461
MA0093.1	MA0093.1	0.54
MA0099.2	MA0099.2	1.96909e-9
MA0100.1	MA0100.1	0.442
MA0101.1	MA0101.1	0.00302
MA0102.2	MA0102.2	0.148
MA0103.1	MA0103.1	0.344
MA0104.2	MA0104.2	0.402
MA0105.1	MA0105.1	2.08375e-4
MA0106.1	MA0106.1	0.0249
MA0107.1	MA0107.1	0.00745
MA0108.2	MA0108.2	0.0868
MA0111.1	MA0111.1	0.36
MA0112.2	MA0112.2	0.00115
MA0113.1	MA0113.1	0.248
MA0114.1	MA0114.1	0.00537
MA0115.1	MA0115.1	0.544
MA0116.1	MA0116.1	0.00288
MA0117.1	MA0117.1	0.885
MA0119.1	MA0119.1	0.0289
MA0122.1	MA0122.1	0.815
MA0124.1	MA0124.1	0.718
MA0125.1	MA0125.1	0.208
MA0131.1	MA0131.1	0.757
MA0135.1	MA0135.1	0.00408
MA0136.1	MA0136.1	1.10241e-9
MA0137.2	MA0137.2	0.193
MA0138.2	MA0138.2	0.108
MA0139.1	MA0139.1	0.424
MA0140.1	MA0140.1	0.0119
MA0141.1	MA0141.1	0.0303
MA0142.1	MA0142.1	0.97
MA0143.1	MA0143.1	0.869
MA0144.1	MA0144.1	0.196
MA0145.1	MA0145.1	0.266
MA0146.1	MA0146.1	0.0169
MA0147.1	MA0147.1	0.288
MA0148.1	MA0148.1	0.0851
MA0149.1	MA0149.1	0.0141
MA0150.1	MA0150.1	0.00136
MA0152.1	MA0152.1	0.642
MA0153.1	MA0153.1	0.545
MA0154.1	MA0154.1	0.0513
MA0155.1	MA0155.1	0.917
MA0156.1	MA0156.1	6.9137e-6
MA0157.1	MA0157.1	0.615
MA0159.1	MA0159.1	0.00858
MA0160.1	MA0160.1	0.0587
MA0162.1	MA0162.1	0.127
MA0163.1	MA0163.1	6.53645e-7
MA0164.1	MA0164.1	0.819
MA0258.1	MA0258.1	0.0154
MA0259.1	MA0259.1	0.689

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10637

Novel motif	Logo	P-value
1	1	0.027
10	10	0.017
100	100	0.273
101	101	0.978
102	102	0.663
103	103	0.173
104	104	0.194
105	105	0.489
106	106	0.0913
107	107	0.148
108	108	0.95
109	109	0.0108
11	11	0.0159
110	110	0.0373
111	111	0.0517
112	112	0.405
113	113	0.76
114	114	0.0725
115	115	0.964
116	116	0.236
117	117	0.00724
118	118	0.0939
119	119	0.0985
12	12	0.835
120	120	0.133
121	121	0.751
122	122	0.443
123	123	0.344
124	124	0.0803
125	125	0.134
126	126	0.0326
127	127	0.567
128	128	0.211
129	129	0.574
13	13	9.20416e-4
130	130	0.545
131	131	0.091
132	132	0.604
133	133	0.00349
134	134	0.256
135	135	0.197
136	136	0.00936
137	137	0.674
138	138	0.867
139	139	0.0861
14	14	0.967
140	140	0.117
141	141	0.221
142	142	0.963
143	143	0.0121
144	144	0.862
145	145	0.105
146	146	0.657
147	147	0.861
148	148	0.15
149	149	0.451
15	15	0.06
150	150	0.165
151	151	0.701
152	152	0.179
153	153	0.528
154	154	0.651
155	155	0.343
156	156	0.403
157	157	0.376
158	158	0.711
159	159	0.164
16	16	0.0756
160	160	0.243
161	161	0.188
162	162	0.902
163	163	0.802
164	164	0.0125
165	165	0.0252
166	166	0.776
167	167	0.167
168	168	0.716
169	169	0.00775
17	17	0.217
18	18	0.239
19	19	0.245
2	2	0.9
20	20	0.0733
21	21	0.113
22	22	0.329
23	23	0.456
24	24	0.148
25	25	0.424
26	26	1.01354e-4
27	27	0.921
28	28	0.551
29	29	0.00632
3	3	0.0157
30	30	0.438
31	31	0.946
32	32	0.0463
33	33	0.0663
34	34	0.984
35	35	0.467
36	36	0.101
37	37	0.0356
38	38	0.323
39	39	0.294
4	4	0.95
40	40	0.0749
41	41	0.45
42	42	0.119
43	43	0.106
44	44	0.115
45	45	0.922
46	46	0.056
47	47	0.0552
48	48	0.053
49	49	0.123
5	5	0.376
50	50	0.375
51	51	0.561
52	52	0.735
53	53	0.934
54	54	0.511
55	55	0.278
56	56	0.512
57	57	0.238
58	58	0.25
59	59	0.229
6	6	0.524
60	60	0.0898
61	61	0.0656
62	62	0.141
63	63	0.178
64	64	0.228
65	65	0.363
66	66	0.268
67	67	0.3
68	68	0.245
69	69	0.569
7	7	0.0463
70	70	0.0252
71	71	0.00758
72	72	0.492
73	73	0.0508
74	74	0.43
75	75	0.0217
76	76	0.266
77	77	0.318
78	78	0.00179
79	79	0.321
8	8	0.0669
80	80	0.98
81	81	0.531
82	82	0.481
83	83	0.222
84	84	0.694
85	85	0.324
86	86	0.19
87	87	0.0177
88	88	0.851
89	89	0.681
9	9	0.641
90	90	0.018
91	91	0.331
92	92	0.407
93	93	0.827
94	94	0.0596
95	95	0.0301
96	96	0.955
97	97	0.799
98	98	0.18
99	99	0.949

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10637

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010031 human temporal lobe - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010031 (human temporal lobe - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0001871,UBERON:0000483,UBERON:0000956,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0002020,UBERON:0002791,UBERON:0003528,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0002619,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0005743,UBERON:0001950,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00004819
+|accession_numbers=CAGE;DRX008736;DRR009608;DRZ001033;DRZ002418;DRZ012383;DRZ013768
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010031
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.75!563.24!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.49!306.78!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.28!189.63!SOX10;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.24!174.40!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!2.10!124.49!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!2.05!225.73!C11orf9;;chr17:53342311..53342400,+!p1@HLF!2.03!120.07!HLF;;chr14:29235961..29236008,+!p1@FOXG1!1.97!92.74!FOXG1;;chr4:57547454..57547469,-!p1@HOPX!1.97!92.54!HOPX;;chr15:80733570..80733659,+!p2@ARNT2!1.90!79.21!ARNT2;;chr9:77112244..77112262,+!p1@RORB!1.89!85.19!RORB;;chr17:37764128..37764258,-!p1@NEUROD2!1.86!72.00!NEUROD2;;chr15:80735246..80735321,+!p3@ARNT2!1.81!63.37!ARNT2;;chr2:162272785..162272836,+!p1@TBR1!1.80!62.14!TBR1;;chr2:95963052..95963106,+!p1@KCNIP3!1.77!57.86!KCNIP3;;chr21:34442540..34442560,+!p2@OLIG1!1.72!51.54!OLIG1;;chr9:114287433..114287513,+!p1@ZNF483!1.70!123.34!ZNF483;;chr5:88178983..88179012,-!p1@MEF2C!1.69!349.95!MEF2C;;chr3:181429704..181429722,+!p1@SOX2!1.68!47.19!SOX2;;chr2:2334997..2335053,-!p1@MYT1L!1.68!46.57!MYT1L;;chr10:64134120..64134183,+!p1@ZNF365!1.67!54.73!ZNF365;;chr4:81118647..81118666,+!p1@PRDM8!1.65!56.70!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.63!41.41!POU3F3;;chr2:145277882..145277967,-!p3@ZEB2!1.61!67.38!ZEB2;;chr16:1031762..1031781,+!p1@SOX8!1.61!39.57!SOX8;;chr22:41763452..41763466,+!p2@TEF!1.60!38.76!TEF;;chr2:60781201..60781258,-!p3@BCL11A!1.59!38.08!BCL11A;;chr19:13135386..13135435,+!p4@NFIX!1.59!37.87!NFIX;;chr19:13135582..13135600,+!p3@NFIX!1.57!35.97!NFIX;;chr10:134599649..134599653,-!p1@NKX6-2!1.56!35.29!NKX6-2;;chr15:80696703..80696754,+!p1@ARNT2!1.55!45.01!ARNT2;;chrX:25034067..25034088,-!p1@ARX!1.55!34.34!ARX;;chr11:8102846..8102892,+!p1@TUB!1.52!44.19!TUB;;chr12:26277817..26277863,-!p2@BHLHE41!1.51!41.95!BHLHE41;;chr8:40755333..40755352,-!p1@ZMAT4!1.51!31.55!ZMAT4;;chr12:106976774..106976788,+!p1@RFX4!1.51!31.34!RFX4;;chr14:29234581..29234601,+!p2@FOXG1!1.50!30.94!FOXG1;;chr18:53070846..53070902,-!p6@TCF4!1.50!30.60!TCF4;;chr1:2461692..2461710,-!p1@HES5!1.50!30.32!HES5;;chr2:95963120..95963136,+!p2@KCNIP3!1.49!29.85!KCNIP3;;chr2:166326200..166326216,+!p1@CSRNP3!1.48!42.49!CSRNP3;;chr14:29236269..29236285,+!p3@FOXG1!1.48!29.17!FOXG1;;chr12:54779511..54779577,-!p5@ZNF385A!1.46!27.94!ZNF385A;;chr5:88179017..88179046,-!p2@MEF2C!1.44!102.53!MEF2C;;chr3:181429741..181429767,+!p2@SOX2!1.44!26.31!SOX2;;chr10:48355030..48355090,+!p1@ZNF488!1.43!32.98!ZNF488;;chr7:31380292..31380351,-!p1@NEUROD6!1.43!25.84!NEUROD6;;chr4:57522166..57522260,-!p2@HOPX!1.41!28.15!HOPX;;chr19:57352109..57352153,-!p2@ZIM2!1.41!24.82!ZIM2;;chr11:125034640..125034655,+!p1@PKNOX2!1.41!24.75!PKNOX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.39!33.72!ZBTB16;;chr19:38720294..38720348,-!p1@DPF1!1.39!29.37!DPF1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.59!LHX2;;chr1:151032860..151032918,+!p1@MLLT11!1.36!249.94!MLLT11;;chr2:162272889..162272915,+!p2@TBR1!1.35!21.49!TBR1;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.24!SOX15;;chr19:46801639..46801699,+!p1@HIF3A!1.33!20.19!HIF3A;;chr1:244214577..244214593,+!p1@ZNF238!1.32!19.92!ZNF238;;chr12:106976678..106976708,+!p2@RFX4!1.31!19.65!RFX4;;chr8:53322304..53322340,-!p1@ST18!1.31!19.51!ST18;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.90!NPAS3;;chr6:19837592..19837621,+!p1@ID4!1.27!104.77!ID4;;chr8:145560371..145560449,-!p1@SCRT1!1.27!17.68!SCRT1;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.53!PROX1;;chr20:62680984..62680999,-!p1@SOX18!1.25!22.03!SOX18;;chr10:119302232..119302265,+!p1@EMX2!1.25!16.93!EMX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.23!24.61!ZNF385A;;chr19:58545454..58545498,+!p1@ZSCAN1!1.23!16.11!ZSCAN1;;chrY:21906594..21906622,-!p1@KDM5D!1.22!15.77!KDM5D;;chr17:38256822..38256851,-!p1@NR1D1!1.21!117.22!NR1D1;;chr6:15401104..15401166,+!p5@JARID2!1.21!15.37!JARID2;;chr2:73520667..73520683,-!p1@EGR4!1.21!15.09!EGR4;;chr19:13134772..13134822,+!p2@NFIX!1.20!21.62!NFIX;;chr19:30863271..30863338,+!p1@ZNF536!1.20!14.96!ZNF536;;chr4:57522598..57522664,-!p3@HOPX!1.20!14.82!HOPX;;chr1:151032922..151032951,+!p2@MLLT11!1.19!24.20!MLLT11;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.04!BHLHE41;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.18!14.07!POU3F3;;chr2:60780607..60780624,-!p2@BCL11A!1.17!42.29!BCL11A;;chr8:22550982..22550999,-!p1@EGR3!1.17!38.76!EGR3;;chr3:24536253..24536328,-!p1@THRB!1.17!25.70!THRB;;chr11:125034605..125034636,+!p2@PKNOX2!1.16!13.39!PKNOX2;;chr3:126076242..126076257,-!p1@KLF15!1.15!16.25!KLF15;;chr10:64133862..64133884,+!p4@ZNF365!1.15!13.26!ZNF365;;chr2:42721205..42721307,+!p4@MTA3!1.15!13.05!MTA3;;chrX:85969626..85969664,+!p1@DACH2!1.15!13.05!DACH2;;chr7:150974206..150974255,-!p1@SMARCD3!1.14!79.21!SMARCD3;;chr19:49140609..49140643,-!p1@DBP!1.13!70.37!DBP;;chr19:46800289..46800327,+!p2@HIF3A!1.13!12.58!HIF3A;;chr11:31832658..31832681,-!p1@PAX6!1.13!12.37!PAX6;;chr2:162272716..162272753,+!p3@TBR1!1.12!12.10!TBR1;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10637.10031-101E4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10031-101E4
 |is_a=EFO:0002091;;FF:0010031
 |is_obsolete=
+|library_id=CNhs10637
+|library_id_phase_based=2:CNhs10637
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10031
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10031
 |name=temporal lobe, adult, pool1
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10637,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636564
@@ Line 56: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=101E4
+|rna_tube_id=1.01E+06
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=REST:4.69722810015;NHLH1,2:4.19796241528;EGR1..3:4.19353810719;ZBTB6:3.83005278848;ZFP161:3.65594868544;PAX5:3.63576764985;AHR_ARNT_ARNT2:3.59293325646;MTF1:3.57525170165;TFAP2B:3.56176986893;MYFfamily:3.5438180431;MTE{core}:3.50619096296;MED-1{core}:3.4676861219;RREB1:3.3536656001;PRRX1,2:3.27125189243;HIC1:3.21883796626;ATF2:3.16873912055;RFX1:3.10907251847;GTF2I:3.05746326305;SMAD1..7,9:2.6983572827;MZF1:2.67416415596;PATZ1:2.62527100237;LMO2:2.61495388813;CUX2:2.49701723257;JUN:2.44489373097;EBF1:2.39079808396;BREu{core}:2.3772512301;FOXM1:2.35118252419;SOX5:2.35093308967;PRDM1:2.33263183758;MAZ:2.28982739897;ZNF423:2.28018756865;SOX{8,9,10}:2.24861298362;GCM1,2:2.21349011543;SOX2:2.1853510087;DBP:2.13749914913;NFIX:2.01700284951;GTF2A1,2:2.01148480779;TFDP1:1.97329939156;RFX2..5_RFXANK_RFXAP:1.92650573673;OCT4_SOX2{dimer}:1.92455965593;SOX17:1.90062607689;PAX6:1.88737170737;HOXA9_MEIS1:1.86505557528;ESRRA:1.82664883544;NKX2-3_NKX2-5:1.80904007168;GFI1B:1.80160706622;POU5F1:1.79730387569;MYOD1:1.79692534449;NKX3-2:1.77498170107;NANOG:1.75751832925;EP300:1.73551656122;MAFB:1.72776445628;LEF1_TCF7_TCF7L1,2:1.67340886319;TGIF1:1.66293823711;POU6F1:1.62756864409;ZNF238:1.59210716006;TFAP2{A,C}:1.50604625061;KLF4:1.48784244273;SP1:1.47711590993;NRF1:1.38980682126;XBP1:1.30517037649;RBPJ:1.27474287376;RORA:1.2623892904;ARID5B:1.23364135203;NFIL3:1.21689499993;HOX{A4,D4}:1.19957099449;HAND1,2:1.15911525065;XCPE1{core}:1.11795878033;ZEB1:1.03263709142;FOXQ1:1.02934712354;SREBF1,2:0.994830707339;FOX{F1,F2,J1}:0.954618363581;HMX1:0.924892644236;GATA4:0.895758825352;POU3F1..4:0.844612422449;MEF2{A,B,C,D}:0.836089808271;ZNF143:0.804843286833;ZIC1..3:0.779827390022;TLX1..3_NFIC{dimer}:0.659023976349;CRX:0.655760317044;bHLH_family:0.631151140564;TBX4,5:0.605600473687;HMGA1,2:0.60365293858;CDC5L:0.589059920002;CREB1:0.586897028248;YY1:0.555593396732;SPZ1:0.536762738743;T:0.526056673213;HBP1_HMGB_SSRP1_UBTF:0.519928037472;ZNF148:0.487480663152;ADNP_IRX_SIX_ZHX:0.47032848609;TLX2:0.403132198028;VSX1,2:0.391399284758;GZF1:0.383728251194;NR5A1,2:0.377993479714;AR:0.366076224816;HOX{A6,A7,B6,B7}:0.33570537915;ATF4:0.306780384193;ESR1:0.303564694493;STAT1,3:0.247897158182;PBX1:0.22072642643;ATF5_CREB3:0.220242766173;FOX{D1,D2}:0.219522193044;TFAP4:0.218817206339;GFI1:0.212541008997;PAX2:0.205659783893;IKZF1:0.0605631505007;ONECUT1,2:0.0437168912086;ZNF384:0.028573767653;NKX6-1,2:0.0204504126676;TFCP2:-0.01575267985;MYBL2:-0.0253586333693;NFY{A,B,C}:-0.0291899003158;NFE2L2:-0.037637117785;SNAI1..3:-0.0535532919323;NR3C1:-0.0985939372501;FOXP1:-0.122861468274;PAX1,9:-0.124190724679;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.138555912581;NFE2L1:-0.166369380859;LHX3,4:-0.227933263175;FOXP3:-0.230622891877;PAX3,7:-0.230943285754;FOXN1:-0.23269998027;BPTF:-0.285526008215;IKZF2:-0.337301092062;NANOG{mouse}:-0.339312171044;IRF7:-0.344432266628;FOXL1:-0.39973637236;TOPORS:-0.413031328609;NFE2:-0.432884389404;NR1H4:-0.439111263043;GLI1..3:-0.451647787537;RXR{A,B,G}:-0.456673963036;PDX1:-0.457110772992;UFEwm:-0.464217482302;FOXA2:-0.500152850731;SPI1:-0.508545605095;ALX1:-0.576476994124;CEBPA,B_DDIT3:-0.614065919369;TEF:-0.650412240045;GATA6:-0.660542309646;STAT2,4,6:-0.670659233257;ATF6:-0.687789923248;HNF1A:-0.697180273192;SPIB:-0.730350640861;TP53:-0.731957595163;HSF1,2:-0.745769763427;ETS1,2:-0.762071882589;IRF1,2:-0.777716010323;TAL1_TCF{3,4,12}:-0.800905685214;NFATC1..3:-0.826132577139;FOSL2:-0.85043051213;BACH2:-0.874149905971;HNF4A_NR2F1,2:-0.882234934234;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.918381304922;FOXD3:-0.954337401018;FOS_FOS{B,L1}_JUN{B,D}:-0.955401203761;TEAD1:-0.966540143316;TBP:-0.974400228795;FOXO1,3,4:-0.979064932598;FOX{I1,J2}:-0.981086338212;DMAP1_NCOR{1,2}_SMARC:-0.989209966636;RUNX1..3:-0.994261141799;HES1:-1.02600594063;PPARG:-1.04889832205;PAX8:-1.08881736362;PAX4:-1.09368698956;SRF:-1.10989102509;POU1F1:-1.12679203265;HLF:-1.16533189916;NFKB1_REL_RELA:-1.19633432938;HIF1A:-1.22996409789;RXRA_VDR{dimer}:-1.30536977313;POU2F1..3:-1.32576580933;E2F1..5:-1.36163202061;ELK1,4_GABP{A,B1}:-1.37083869717;ALX4:-1.46565062892;EN1,2:-1.515524428;NKX2-2,8:-1.52472140604;MYB:-1.6698809008;STAT5{A,B}:-1.68443811557;PITX1..3:-1.81264863722;ELF1,2,4:-1.93757021041;NKX3-1:-2.24800141733;EVI1:-2.42381223707;HOX{A5,B5}:-2.51068451665;NR6A1:-2.66313911109;ZBTB16:-2.74052584398;NKX2-1,4:-2.80640123207;CDX1,2,4:-3.11410327719;AIRE:-3.18306501584
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10031-101E4;search_select_hide=table117:FF:10031-101E4
 }}

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FF:10031-101E4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0