FF:10037-101F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005208 | ||
|accession_numbers=CAGE;DRX008689;DRR009561;DRZ000986;DRZ002371;DRZ012336;DRZ013721 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001882,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000349,UBERON:0005403,UBERON:0010011,UBERON:0000204,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010037 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10037-101F1 | |id=FF:10037-101F1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010037 | ||
|is_obsolete= | |||
|library_id=CNhs10644 | |||
|library_id_phase_based=2:CNhs10644 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10037 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10037 | |||
|name=nucleus accumbens, adult, pool1 | |name=nucleus accumbens, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10644,LSID658,release008,COMPLETED | |profile_hcage=CNhs10644,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636569 | |rna_catalog_number=Cat:636569 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.6163599365558e-299!GO:0005737;cytoplasm;3.8475074026176e-153!GO:0044444;cytoplasmic part;1.75314055362146e-99!GO:0043226;organelle;1.85844514099438e-87!GO:0043229;intracellular organelle;5.16905373430651e-87!GO:0043227;membrane-bound organelle;5.77535492317687e-82!GO:0043231;intracellular membrane-bound organelle;8.08595260766435e-82!GO:0005515;protein binding;2.46279769115386e-63!GO:0044422;organelle part;1.91907487609207e-59!GO:0044446;intracellular organelle part;1.57333255627153e-58!GO:0032991;macromolecular complex;2.56980538139486e-52!GO:0016043;cellular component organization and biogenesis;2.50423348676329e-45!GO:0005739;mitochondrion;4.4903958721466e-39!GO:0031090;organelle membrane;1.466246418559e-38!GO:0033036;macromolecule localization;1.466246418559e-38!GO:0015031;protein transport;3.2688970804968e-38!GO:0008104;protein localization;2.91375925019861e-35!GO:0003723;RNA binding;8.04505079005762e-35!GO:0045184;establishment of protein localization;1.15735481121145e-34!GO:0030529;ribonucleoprotein complex;3.0861126382121e-34!GO:0046907;intracellular transport;2.23469552246848e-30!GO:0043234;protein complex;1.14897161066934e-29!GO:0044429;mitochondrial part;2.56396881513221e-29!GO:0051649;establishment of cellular localization;5.68130336826438e-28!GO:0051641;cellular localization;7.96182780345549e-28!GO:0043233;organelle lumen;1.18857947450325e-27!GO:0031974;membrane-enclosed lumen;1.18857947450325e-27!GO:0016192;vesicle-mediated transport;2.6419163309746e-27!GO:0044428;nuclear part;6.42821101425917e-25!GO:0031975;envelope;7.19116906986859e-25!GO:0031967;organelle envelope;1.07621078581111e-24!GO:0019538;protein metabolic process;1.25032025657908e-23!GO:0006886;intracellular protein transport;1.56485711493426e-22!GO:0044238;primary metabolic process;2.69857403796427e-22!GO:0016071;mRNA metabolic process;3.88341190614712e-22!GO:0005829;cytosol;1.6115440266632e-21!GO:0005794;Golgi apparatus;1.07976129393063e-20!GO:0044237;cellular metabolic process;1.3253306324259e-20!GO:0005740;mitochondrial envelope;1.444962255164e-20!GO:0006396;RNA processing;1.748012165829e-20!GO:0044260;cellular macromolecule metabolic process;2.22277744185444e-20!GO:0031966;mitochondrial membrane;2.58765133895043e-20!GO:0006119;oxidative phosphorylation;3.2746604651762e-20!GO:0031982;vesicle;5.04750472572085e-20!GO:0044267;cellular protein metabolic process;9.05216931531311e-20!GO:0008380;RNA splicing;1.3180354140231e-19!GO:0031410;cytoplasmic vesicle;2.29628739509182e-19!GO:0031988;membrane-bound vesicle;3.09986586249202e-19!GO:0005840;ribosome;5.8728449911338e-19!GO:0043170;macromolecule metabolic process;1.00077284064651e-18!GO:0016023;cytoplasmic membrane-bound vesicle;1.59112275949901e-18!GO:0006397;mRNA processing;2.66033799311193e-18!GO:0019866;organelle inner membrane;9.06750165137564e-18!GO:0006996;organelle organization and biogenesis;1.83171452324866e-17!GO:0005743;mitochondrial inner membrane;1.98253073576211e-17!GO:0000166;nucleotide binding;1.78781553929162e-16!GO:0006512;ubiquitin cycle;4.5084791288723e-16!GO:0065003;macromolecular complex assembly;1.2523050621696e-15!GO:0009058;biosynthetic process;1.41889366870951e-15!GO:0005634;nucleus;2.28725698845436e-15!GO:0031981;nuclear lumen;3.98224283386944e-15!GO:0003735;structural constituent of ribosome;4.28810007555417e-15!GO:0012505;endomembrane system;4.38714201590755e-15!GO:0006412;translation;5.27493546984748e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.50444748245982e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.67189626792238e-14!GO:0043412;biopolymer modification;1.73778014158782e-14!GO:0016462;pyrophosphatase activity;2.03313255257328e-14!GO:0044455;mitochondrial membrane part;2.17611743353687e-14!GO:0016874;ligase activity;8.14971166844926e-14!GO:0006464;protein modification process;8.95890853950252e-14!GO:0022607;cellular component assembly;9.39524531426432e-14!GO:0043687;post-translational protein modification;1.00300843241223e-13!GO:0017111;nucleoside-triphosphatase activity;1.01680344557008e-13!GO:0005746;mitochondrial respiratory chain;1.438954794126e-13!GO:0045045;secretory pathway;1.46716340134993e-13!GO:0005681;spliceosome;3.31504231579171e-13!GO:0048770;pigment granule;4.05730381836282e-13!GO:0042470;melanosome;4.05730381836282e-13!GO:0032553;ribonucleotide binding;7.72655972594307e-13!GO:0032555;purine ribonucleotide binding;7.72655972594307e-13!GO:0050136;NADH dehydrogenase (quinone) activity;8.03346306771176e-13!GO:0003954;NADH dehydrogenase activity;8.03346306771176e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.03346306771176e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.5752341289241e-13!GO:0007264;small GTPase mediated signal transduction;1.13242924165015e-12!GO:0044249;cellular biosynthetic process;1.3349248977233e-12!GO:0006810;transport;1.75833787862879e-12!GO:0033279;ribosomal subunit;3.43968761411377e-12!GO:0030135;coated vesicle;4.38454537854021e-12!GO:0048193;Golgi vesicle transport;4.46684535096772e-12!GO:0017076;purine nucleotide binding;4.70512190352791e-12!GO:0007399;nervous system development;1.8048354795854e-11!GO:0006457;protein folding;2.29930894668685e-11!GO:0030695;GTPase regulator activity;3.55777222747367e-11!GO:0043005;neuron projection;3.62489250117638e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.29503679915454e-11!GO:0042773;ATP synthesis coupled electron transport;4.29503679915454e-11!GO:0030964;NADH dehydrogenase complex (quinone);4.3403717358804e-11!GO:0045271;respiratory chain complex I;4.3403717358804e-11!GO:0005747;mitochondrial respiratory chain complex I;4.3403717358804e-11!GO:0009059;macromolecule biosynthetic process;4.95489432379866e-11!GO:0031980;mitochondrial lumen;5.15702597658983e-11!GO:0005759;mitochondrial matrix;5.15702597658983e-11!GO:0008092;cytoskeletal protein binding;6.00443507642525e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.25582385211232e-11!GO:0043283;biopolymer metabolic process;7.87690275870796e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.10750903256534e-11!GO:0044431;Golgi apparatus part;2.02603883576563e-10!GO:0019829;cation-transporting ATPase activity;2.35216450234812e-10!GO:0005783;endoplasmic reticulum;3.17027006087837e-10!GO:0003924;GTPase activity;3.32173261302539e-10!GO:0051179;localization;3.32173261302539e-10!GO:0006793;phosphorus metabolic process;3.50682869325905e-10!GO:0006796;phosphate metabolic process;3.50682869325905e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.63784072767575e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;4.41914919421761e-10!GO:0006511;ubiquitin-dependent protein catabolic process;5.34654914124331e-10!GO:0051234;establishment of localization;6.41015339739399e-10!GO:0005768;endosome;6.47824720910741e-10!GO:0019941;modification-dependent protein catabolic process;7.35546782544616e-10!GO:0043632;modification-dependent macromolecule catabolic process;7.35546782544616e-10!GO:0022618;protein-RNA complex assembly;7.92214724621219e-10!GO:0005083;small GTPase regulator activity;9.77925595790968e-10!GO:0005654;nucleoplasm;9.86750762309542e-10!GO:0044257;cellular protein catabolic process;1.10578207135965e-09!GO:0006605;protein targeting;1.10853267560464e-09!GO:0051082;unfolded protein binding;1.47966843402289e-09!GO:0016044;membrane organization and biogenesis;1.94387529594103e-09!GO:0044445;cytosolic part;2.29180745834184e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.11752011667425e-09!GO:0008135;translation factor activity, nucleic acid binding;3.59181984490628e-09!GO:0008639;small protein conjugating enzyme activity;3.72190606413316e-09!GO:0032940;secretion by cell;3.75294506535094e-09!GO:0044265;cellular macromolecule catabolic process;4.6498700158466e-09!GO:0008565;protein transporter activity;6.14398006214759e-09!GO:0004842;ubiquitin-protein ligase activity;6.16478164487616e-09!GO:0019787;small conjugating protein ligase activity;6.84019726265705e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.32388554415988e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.38920959168355e-09!GO:0044451;nucleoplasm part;1.01214978321915e-08!GO:0005525;GTP binding;1.37236920008019e-08!GO:0030136;clathrin-coated vesicle;1.56925604348075e-08!GO:0007010;cytoskeleton organization and biogenesis;2.25470396222931e-08!GO:0015986;ATP synthesis coupled proton transport;2.36828949174663e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.36828949174663e-08!GO:0008134;transcription factor binding;3.49921102459467e-08!GO:0000502;proteasome complex (sensu Eukaryota);3.66328941382366e-08!GO:0006461;protein complex assembly;4.23641883194959e-08!GO:0016881;acid-amino acid ligase activity;6.06590529869781e-08!GO:0043285;biopolymer catabolic process;6.33739916122443e-08!GO:0030163;protein catabolic process;6.43558628738862e-08!GO:0019226;transmission of nerve impulse;6.47859621983645e-08!GO:0043228;non-membrane-bound organelle;6.76382107027331e-08!GO:0043232;intracellular non-membrane-bound organelle;6.76382107027331e-08!GO:0044248;cellular catabolic process;7.31652787222259e-08!GO:0000139;Golgi membrane;8.063031008382e-08!GO:0007242;intracellular signaling cascade;9.17192980635647e-08!GO:0051186;cofactor metabolic process;1.18987804847338e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.86250780876204e-07!GO:0009060;aerobic respiration;2.04846827073199e-07!GO:0032561;guanyl ribonucleotide binding;2.07357739242187e-07!GO:0019001;guanyl nucleotide binding;2.07357739242187e-07!GO:0015935;small ribosomal subunit;2.07590749868941e-07!GO:0032559;adenyl ribonucleotide binding;2.20231949281404e-07!GO:0015631;tubulin binding;2.70870560630353e-07!GO:0016310;phosphorylation;2.78147582398702e-07!GO:0045333;cellular respiration;2.88597674602378e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.63000298643978e-07!GO:0048471;perinuclear region of cytoplasm;3.956173540905e-07!GO:0019717;synaptosome;5.68642649250257e-07!GO:0009057;macromolecule catabolic process;5.70181825740916e-07!GO:0048475;coated membrane;5.99060150607072e-07!GO:0030117;membrane coat;5.99060150607072e-07!GO:0005524;ATP binding;6.5967443647332e-07!GO:0046034;ATP metabolic process;7.15484153908756e-07!GO:0044440;endosomal part;7.91309008534577e-07!GO:0010008;endosome membrane;7.91309008534577e-07!GO:0030425;dendrite;8.35484523087648e-07!GO:0006446;regulation of translational initiation;1.00142659116273e-06!GO:0030554;adenyl nucleotide binding;1.08524975457602e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.14361334393934e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19988951609261e-06!GO:0000375;RNA splicing, via transesterification reactions;1.19988951609261e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19988951609261e-06!GO:0003743;translation initiation factor activity;1.2726732705508e-06!GO:0006754;ATP biosynthetic process;1.27733097142214e-06!GO:0006753;nucleoside phosphate metabolic process;1.27733097142214e-06!GO:0006163;purine nucleotide metabolic process;1.3499620202726e-06!GO:0006413;translational initiation;1.3499620202726e-06!GO:0016604;nuclear body;1.38450196698194e-06!GO:0010467;gene expression;1.39906606190336e-06!GO:0015630;microtubule cytoskeleton;1.47055322020832e-06!GO:0009141;nucleoside triphosphate metabolic process;1.49381500185418e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.55142242759531e-06!GO:0016607;nuclear speck;1.74806096001889e-06!GO:0006164;purine nucleotide biosynthetic process;1.7621656601357e-06!GO:0006913;nucleocytoplasmic transport;2.15899740246504e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.22066817737807e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.22066817737807e-06!GO:0009150;purine ribonucleotide metabolic process;2.30301532225599e-06!GO:0019899;enzyme binding;2.40011764555819e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.56374580698331e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.62795462029228e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.76703499179019e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.93099961420423e-06!GO:0030029;actin filament-based process;2.93893816467727e-06!GO:0051169;nuclear transport;3.05905912382593e-06!GO:0009259;ribonucleotide metabolic process;3.29464894664375e-06!GO:0044432;endoplasmic reticulum part;3.48063073091625e-06!GO:0005905;coated pit;4.19484809983409e-06!GO:0006897;endocytosis;4.20562976833213e-06!GO:0010324;membrane invagination;4.20562976833213e-06!GO:0008287;protein serine/threonine phosphatase complex;4.26112630766315e-06!GO:0006099;tricarboxylic acid cycle;4.6094299189479e-06!GO:0046356;acetyl-CoA catabolic process;4.6094299189479e-06!GO:0031965;nuclear membrane;5.03382258334854e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.23489715362306e-06!GO:0009055;electron carrier activity;5.28896070938579e-06!GO:0006732;coenzyme metabolic process;5.28896070938579e-06!GO:0007268;synaptic transmission;5.51014354281687e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.64353453971957e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.64353453971957e-06!GO:0003779;actin binding;5.82875256599199e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.71199503752668e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.71199503752668e-06!GO:0005761;mitochondrial ribosome;7.01125113343647e-06!GO:0000313;organellar ribosome;7.01125113343647e-06!GO:0007265;Ras protein signal transduction;7.37856269864091e-06!GO:0005798;Golgi-associated vesicle;7.92173137397572e-06!GO:0031252;leading edge;8.0600257885258e-06!GO:0009260;ribonucleotide biosynthetic process;8.06277673635616e-06!GO:0051056;regulation of small GTPase mediated signal transduction;9.2240931714812e-06!GO:0005770;late endosome;1.01498024476059e-05!GO:0008021;synaptic vesicle;1.21227770947787e-05!GO:0015934;large ribosomal subunit;1.37562523425881e-05!GO:0032446;protein modification by small protein conjugation;1.47173990196999e-05!GO:0009109;coenzyme catabolic process;1.47173990196999e-05!GO:0006084;acetyl-CoA metabolic process;1.82778133320904e-05!GO:0005635;nuclear envelope;2.0289413633688e-05!GO:0005769;early endosome;2.07107772714298e-05!GO:0042623;ATPase activity, coupled;2.11565483227384e-05!GO:0016567;protein ubiquitination;2.20919638213943e-05!GO:0008047;enzyme activator activity;2.25623386870183e-05!GO:0045259;proton-transporting ATP synthase complex;2.32693233513093e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.50716143251672e-05!GO:0030120;vesicle coat;2.50716143251672e-05!GO:0030662;coated vesicle membrane;2.50716143251672e-05!GO:0016887;ATPase activity;2.53686357009816e-05!GO:0005874;microtubule;2.75667158015412e-05!GO:0005789;endoplasmic reticulum membrane;2.93220282806924e-05!GO:0005096;GTPase activator activity;3.07464334638069e-05!GO:0005730;nucleolus;3.64472646278964e-05!GO:0048489;synaptic vesicle transport;3.78778089442181e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.93105260891663e-05!GO:0008654;phospholipid biosynthetic process;6.52691360923213e-05!GO:0000902;cell morphogenesis;7.367666561252e-05!GO:0032989;cellular structure morphogenesis;7.367666561252e-05!GO:0022890;inorganic cation transmembrane transporter activity;7.49031679795922e-05!GO:0051187;cofactor catabolic process;8.3411472344809e-05!GO:0051128;regulation of cellular component organization and biogenesis;9.72383859926725e-05!GO:0008017;microtubule binding;0.00010283768044588!GO:0006888;ER to Golgi vesicle-mediated transport;0.000103810320750684!GO:0048523;negative regulation of cellular process;0.000107725305620071!GO:0003712;transcription cofactor activity;0.000127374352115273!GO:0016301;kinase activity;0.000128207225651983!GO:0006613;cotranslational protein targeting to membrane;0.00013644060723554!GO:0017038;protein import;0.000139000901472583!GO:0005085;guanyl-nucleotide exchange factor activity;0.00015140139677074!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000161049426204131!GO:0030133;transport vesicle;0.000168829317029682!GO:0009056;catabolic process;0.00018089416277267!GO:0007269;neurotransmitter secretion;0.000203073096475756!GO:0004721;phosphoprotein phosphatase activity;0.000221569522445434!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000221569522445434!GO:0015399;primary active transmembrane transporter activity;0.000221569522445434!GO:0016311;dephosphorylation;0.000221569522445434!GO:0019208;phosphatase regulator activity;0.000236091369376578!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000244332799732437!GO:0005773;vacuole;0.000261630668438116!GO:0046467;membrane lipid biosynthetic process;0.000266454957195612!GO:0030027;lamellipodium;0.000272953578575444!GO:0000151;ubiquitin ligase complex;0.000305068371340487!GO:0001505;regulation of neurotransmitter levels;0.000312049699512198!GO:0019902;phosphatase binding;0.000317539918035015!GO:0016791;phosphoric monoester hydrolase activity;0.000367829989233255!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000374713620130635!GO:0051246;regulation of protein metabolic process;0.000384251764298716!GO:0030118;clathrin coat;0.000386073516429675!GO:0006403;RNA localization;0.000387325189629356!GO:0045786;negative regulation of progression through cell cycle;0.000426528277117814!GO:0016568;chromatin modification;0.000461179674564785!GO:0050657;nucleic acid transport;0.000463243529225818!GO:0051236;establishment of RNA localization;0.000463243529225818!GO:0050658;RNA transport;0.000463243529225818!GO:0043492;ATPase activity, coupled to movement of substances;0.000469838331384702!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000473123915815711!GO:0006650;glycerophospholipid metabolic process;0.000476941066079222!GO:0005793;ER-Golgi intermediate compartment;0.000485797336370726!GO:0004674;protein serine/threonine kinase activity;0.000539634345607524!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000560244982263498!GO:0045055;regulated secretory pathway;0.000560244982263498!GO:0005643;nuclear pore;0.000578620582957509!GO:0000245;spliceosome assembly;0.000578620582957509!GO:0006470;protein amino acid dephosphorylation;0.000591378910968237!GO:0046578;regulation of Ras protein signal transduction;0.000600205469980405!GO:0005516;calmodulin binding;0.000617900743299671!GO:0015980;energy derivation by oxidation of organic compounds;0.000629723247336159!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000636911971238899!GO:0044453;nuclear membrane part;0.000652907444126172!GO:0030424;axon;0.00065813042704751!GO:0009966;regulation of signal transduction;0.000677237465434832!GO:0007019;microtubule depolymerization;0.000812477258930334!GO:0005741;mitochondrial outer membrane;0.00082543361845528!GO:0000159;protein phosphatase type 2A complex;0.000835103976960937!GO:0048519;negative regulation of biological process;0.000862007118868589!GO:0019888;protein phosphatase regulator activity;0.000889817761162428!GO:0008601;protein phosphatase type 2A regulator activity;0.000893393100874762!GO:0016050;vesicle organization and biogenesis;0.00093080006655293!GO:0016197;endosome transport;0.000987556757940988!GO:0008610;lipid biosynthetic process;0.00107410904185635!GO:0006752;group transfer coenzyme metabolic process;0.00110853785890335!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00111425405609633!GO:0031072;heat shock protein binding;0.0011352896116372!GO:0008026;ATP-dependent helicase activity;0.00116679028268542!GO:0043566;structure-specific DNA binding;0.0011951483246777!GO:0006643;membrane lipid metabolic process;0.0011951483246777!GO:0051188;cofactor biosynthetic process;0.00120230290275816!GO:0050767;regulation of neurogenesis;0.00120440308920458!GO:0005875;microtubule associated complex;0.00127355897139239!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00127802693622403!GO:0016740;transferase activity;0.0013535692223315!GO:0030427;site of polarized growth;0.00137060556487328!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00137480572886157!GO:0003729;mRNA binding;0.00146283515156158!GO:0030384;phosphoinositide metabolic process;0.00154711625624269!GO:0043623;cellular protein complex assembly;0.00154711625624269!GO:0003697;single-stranded DNA binding;0.00159770072861844!GO:0031968;organelle outer membrane;0.00160395614722583!GO:0030426;growth cone;0.0016198495867721!GO:0019867;outer membrane;0.00166370072910728!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00167582520582231!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00183378451872781!GO:0022406;membrane docking;0.00185420063037492!GO:0048278;vesicle docking;0.00185420063037492!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00189193195044489!GO:0006904;vesicle docking during exocytosis;0.00190183343484949!GO:0006891;intra-Golgi vesicle-mediated transport;0.00198374893504631!GO:0048487;beta-tubulin binding;0.00208019846875047!GO:0003724;RNA helicase activity;0.00210894618425686!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00219520015170285!GO:0055083;monovalent inorganic anion homeostasis;0.00219520015170285!GO:0055064;chloride ion homeostasis;0.00219520015170285!GO:0030644;cellular chloride ion homeostasis;0.00219520015170285!GO:0006612;protein targeting to membrane;0.00221049148624498!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00227738770520838!GO:0000323;lytic vacuole;0.00233199662659428!GO:0005764;lysosome;0.00233199662659428!GO:0048699;generation of neurons;0.00238827826313425!GO:0005938;cell cortex;0.00258130426632463!GO:0008154;actin polymerization and/or depolymerization;0.00260513011457058!GO:0031114;regulation of microtubule depolymerization;0.00261012423349778!GO:0007026;negative regulation of microtubule depolymerization;0.00261012423349778!GO:0004386;helicase activity;0.00263929029836964!GO:0016564;transcription repressor activity;0.00274272336076726!GO:0031902;late endosome membrane;0.00275850144596579!GO:0009117;nucleotide metabolic process;0.00288680457841439!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00289072604361982!GO:0042578;phosphoric ester hydrolase activity;0.00290165335341949!GO:0004722;protein serine/threonine phosphatase activity;0.00292975085559585!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00304778514863146!GO:0004812;aminoacyl-tRNA ligase activity;0.00304778514863146!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00304778514863146!GO:0005048;signal sequence binding;0.00308605257171688!GO:0006606;protein import into nucleus;0.00311946952031222!GO:0012506;vesicle membrane;0.00315263279896037!GO:0048167;regulation of synaptic plasticity;0.00315263279896037!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0031911103112918!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0031911103112918!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0031911103112918!GO:0006323;DNA packaging;0.00330943508404491!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00339808482435636!GO:0007266;Rho protein signal transduction;0.00355424720818808!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00368390797942931!GO:0022008;neurogenesis;0.00368702589009544!GO:0051170;nuclear import;0.00370849754640119!GO:0005869;dynactin complex;0.00388598973671974!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00392603104054549!GO:0004667;prostaglandin-D synthase activity;0.00392603104054549!GO:0050802;circadian sleep/wake cycle, sleep;0.00392603104054549!GO:0022410;circadian sleep/wake cycle process;0.00392603104054549!GO:0042749;regulation of circadian sleep/wake cycle;0.00392603104054549!GO:0031901;early endosome membrane;0.0039674166902106!GO:0051427;hormone receptor binding;0.00407025327528292!GO:0016126;sterol biosynthetic process;0.00409900806172939!GO:0006892;post-Golgi vesicle-mediated transport;0.00410643660599883!GO:0007272;ensheathment of neurons;0.00412215670783789!GO:0008366;axon ensheathment;0.00412215670783789!GO:0003714;transcription corepressor activity;0.00419477529629239!GO:0030182;neuron differentiation;0.00419477529629239!GO:0051087;chaperone binding;0.00440126641440251!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00448031723458633!GO:0043038;amino acid activation;0.00448783740016682!GO:0006418;tRNA aminoacylation for protein translation;0.00448783740016682!GO:0043039;tRNA aminoacylation;0.00448783740016682!GO:0030030;cell projection organization and biogenesis;0.00459171405468606!GO:0048858;cell projection morphogenesis;0.00459171405468606!GO:0032990;cell part morphogenesis;0.00459171405468606!GO:0009108;coenzyme biosynthetic process;0.00464531332325066!GO:0032011;ARF protein signal transduction;0.00472020608246129!GO:0032012;regulation of ARF protein signal transduction;0.00472020608246129!GO:0005774;vacuolar membrane;0.00473078361656779!GO:0046488;phosphatidylinositol metabolic process;0.00477557971632004!GO:0051028;mRNA transport;0.00489288490501465!GO:0030660;Golgi-associated vesicle membrane;0.0049788385250506!GO:0043209;myelin sheath;0.00555306482497772!GO:0019903;protein phosphatase binding;0.00558782367181842!GO:0051168;nuclear export;0.00562676141936346!GO:0030054;cell junction;0.00568146851932436!GO:0042995;cell projection;0.00581809807921513!GO:0043025;cell soma;0.00610412906065567!GO:0043087;regulation of GTPase activity;0.00627852071937277!GO:0051261;protein depolymerization;0.00637032690546011!GO:0006607;NLS-bearing substrate import into nucleus;0.0065863812959872!GO:0030658;transport vesicle membrane;0.0066517590300814!GO:0035257;nuclear hormone receptor binding;0.00697532025277694!GO:0044433;cytoplasmic vesicle part;0.00699499331747662!GO:0050803;regulation of synapse structure and activity;0.00719991035342406!GO:0006644;phospholipid metabolic process;0.00747594806996836!GO:0050811;GABA receptor binding;0.00759996587840398!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00761088456364096!GO:0019198;transmembrane receptor protein phosphatase activity;0.00761088456364096!GO:0046474;glycerophospholipid biosynthetic process;0.00793819325840333!GO:0044448;cell cortex part;0.00821482003597943!GO:0051920;peroxiredoxin activity;0.00839894944481424!GO:0007017;microtubule-based process;0.00846678668901891!GO:0050839;cell adhesion molecule binding;0.00846678668901891!GO:0009165;nucleotide biosynthetic process;0.00848401723837823!GO:0001508;regulation of action potential;0.0085818339868219!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00863551938862422!GO:0019904;protein domain specific binding;0.00867436125980582!GO:0030867;rough endoplasmic reticulum membrane;0.00875999763176164!GO:0048500;signal recognition particle;0.00875999763176164!GO:0000904;cellular morphogenesis during differentiation;0.00902730722848283!GO:0051540;metal cluster binding;0.00910748832054346!GO:0051536;iron-sulfur cluster binding;0.00910748832054346!GO:0065002;intracellular protein transport across a membrane;0.00934423297689408!GO:0005813;centrosome;0.00980142786320241!GO:0043021;ribonucleoprotein binding;0.00989135936494225!GO:0019887;protein kinase regulator activity;0.0104036742928785!GO:0003713;transcription coactivator activity;0.0104606102803018!GO:0048667;neuron morphogenesis during differentiation;0.0104606102803018!GO:0048812;neurite morphogenesis;0.0104606102803018!GO:0005099;Ras GTPase activator activity;0.0105136176452295!GO:0001726;ruffle;0.0106365702133934!GO:0048666;neuron development;0.0109576690604612!GO:0030258;lipid modification;0.011035136422586!GO:0008250;oligosaccharyl transferase complex;0.0114152723979515!GO:0006665;sphingolipid metabolic process;0.0116306086585125!GO:0006916;anti-apoptosis;0.0125222616742678!GO:0008186;RNA-dependent ATPase activity;0.0125222616742678!GO:0003746;translation elongation factor activity;0.0125222616742678!GO:0006695;cholesterol biosynthetic process;0.0127534658344198!GO:0005791;rough endoplasmic reticulum;0.013085449691563!GO:0001578;microtubule bundle formation;0.0137671531858678!GO:0005839;proteasome core complex (sensu Eukaryota);0.0139523720392614!GO:0035258;steroid hormone receptor binding;0.0141389799468293!GO:0030137;COPI-coated vesicle;0.0141492120608914!GO:0030532;small nuclear ribonucleoprotein complex;0.0142112071127023!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0143057972085761!GO:0030041;actin filament polymerization;0.0143280567022111!GO:0006402;mRNA catabolic process;0.0144196421430327!GO:0005765;lysosomal membrane;0.0146716637090471!GO:0006259;DNA metabolic process;0.0147323729545175!GO:0006414;translational elongation;0.0147565399079794!GO:0031175;neurite development;0.0148404737380917!GO:0031109;microtubule polymerization or depolymerization;0.0148404737380917!GO:0033673;negative regulation of kinase activity;0.0148404737380917!GO:0006469;negative regulation of protein kinase activity;0.0148404737380917!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0150937911745869!GO:0051726;regulation of cell cycle;0.0154843327267056!GO:0009892;negative regulation of metabolic process;0.0162401011768082!GO:0044437;vacuolar part;0.0176438496474659!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0183904455464318!GO:0005815;microtubule organizing center;0.0185554070118211!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.01859885913159!GO:0004683;calmodulin-dependent protein kinase activity;0.0187170561563285!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0187170561563285!GO:0045047;protein targeting to ER;0.0187170561563285!GO:0030659;cytoplasmic vesicle membrane;0.0187696440425358!GO:0030132;clathrin coat of coated pit;0.0189642364404778!GO:0005868;cytoplasmic dynein complex;0.0189642364404778!GO:0004672;protein kinase activity;0.0189642364404778!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0189642364404778!GO:0035035;histone acetyltransferase binding;0.0189642364404778!GO:0000287;magnesium ion binding;0.0190295411418021!GO:0031124;mRNA 3'-end processing;0.0191997542980645!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0197254218959489!GO:0042254;ribosome biogenesis and assembly;0.0199790199528934!GO:0015629;actin cytoskeleton;0.0201517437533096!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.020245914605304!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.020245914605304!GO:0044456;synapse part;0.0203012031987994!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0205144219903437!GO:0007034;vacuolar transport;0.0206646769614425!GO:0008088;axon cargo transport;0.0208337508309286!GO:0000314;organellar small ribosomal subunit;0.021295315792829!GO:0005763;mitochondrial small ribosomal subunit;0.021295315792829!GO:0030742;GTP-dependent protein binding;0.0216010798523177!GO:0046930;pore complex;0.021675097095!GO:0000074;regulation of progression through cell cycle;0.0219349447673071!GO:0030125;clathrin vesicle coat;0.0233243524158937!GO:0030665;clathrin coated vesicle membrane;0.0233243524158937!GO:0005885;Arp2/3 protein complex;0.0235118222734125!GO:0008286;insulin receptor signaling pathway;0.0240148150957425!GO:0019894;kinesin binding;0.0241151063193731!GO:0006661;phosphatidylinositol biosynthetic process;0.0245547589072876!GO:0007611;learning and/or memory;0.0247175956653489!GO:0005100;Rho GTPase activator activity;0.0248585974096668!GO:0045296;cadherin binding;0.0250242729473387!GO:0008361;regulation of cell size;0.0250378558556041!GO:0000059;protein import into nucleus, docking;0.0251955170532817!GO:0046489;phosphoinositide biosynthetic process;0.0255972840230822!GO:0065009;regulation of a molecular function;0.0257238812113934!GO:0006818;hydrogen transport;0.0260601958106508!GO:0008312;7S RNA binding;0.0260840267347351!GO:0005092;GDP-dissociation inhibitor activity;0.0260973617946555!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0265543721922421!GO:0048168;regulation of neuronal synaptic plasticity;0.0265543721922421!GO:0051348;negative regulation of transferase activity;0.0266725332188406!GO:0006366;transcription from RNA polymerase II promoter;0.0271498177235549!GO:0008180;signalosome;0.0272417768007131!GO:0008139;nuclear localization sequence binding;0.0275114156875724!GO:0019207;kinase regulator activity;0.0277201698322785!GO:0004576;oligosaccharyl transferase activity;0.0290371755467477!GO:0004004;ATP-dependent RNA helicase activity;0.0292244137894024!GO:0043407;negative regulation of MAP kinase activity;0.0293708664047558!GO:0000062;acyl-CoA binding;0.0295841449497727!GO:0042552;myelination;0.0297974671952992!GO:0016363;nuclear matrix;0.0302110729398029!GO:0042670;retinal cone cell differentiation;0.0302110729398029!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0302110729398029!GO:0046549;retinal cone cell development;0.0302110729398029!GO:0016079;synaptic vesicle exocytosis;0.0303592198915741!GO:0046839;phospholipid dephosphorylation;0.0308635570657087!GO:0019783;small conjugating protein-specific protease activity;0.0310014491942191!GO:0030119;AP-type membrane coat adaptor complex;0.0310014491942191!GO:0043069;negative regulation of programmed cell death;0.0312819922263197!GO:0048468;cell development;0.0312819922263197!GO:0033130;acetylcholine receptor binding;0.0313035541632827!GO:0008022;protein C-terminus binding;0.0315760462128606!GO:0051287;NAD binding;0.0316338666752108!GO:0031371;ubiquitin conjugating enzyme complex;0.0320152217797417!GO:0050789;regulation of biological process;0.032283860782323!GO:0000209;protein polyubiquitination;0.0324053079132195!GO:0051539;4 iron, 4 sulfur cluster binding;0.0335439919211753!GO:0007409;axonogenesis;0.0339403322951426!GO:0003711;transcription elongation regulator activity;0.0340708283861169!GO:0016615;malate dehydrogenase activity;0.0346754325886873!GO:0006595;polyamine metabolic process;0.0347715371152433!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0349592080398768!GO:0008219;cell death;0.0349592080398768!GO:0016265;death;0.0349592080398768!GO:0015992;proton transport;0.0350838890975415!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0354280159840721!GO:0033043;regulation of organelle organization and biogenesis;0.0354280159840721!GO:0016579;protein deubiquitination;0.0360521036190327!GO:0019911;structural constituent of myelin sheath;0.0360521036190327!GO:0051252;regulation of RNA metabolic process;0.0361738487465785!GO:0030131;clathrin adaptor complex;0.0361738487465785!GO:0043066;negative regulation of apoptosis;0.0367556776643949!GO:0016049;cell growth;0.0367556776643949!GO:0006887;exocytosis;0.0367802743789716!GO:0004843;ubiquitin-specific protease activity;0.0367802743789716!GO:0007612;learning;0.0371279688388522!GO:0004298;threonine endopeptidase activity;0.0377231688283864!GO:0007049;cell cycle;0.0383256298278461!GO:0016070;RNA metabolic process;0.0384756926462845!GO:0006672;ceramide metabolic process;0.0394776642722195!GO:0004221;ubiquitin thiolesterase activity;0.0403819709342714!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0417259184856177!GO:0006376;mRNA splice site selection;0.0419900348365868!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0419900348365868!GO:0043488;regulation of mRNA stability;0.0420160859013657!GO:0043487;regulation of RNA stability;0.0420160859013657!GO:0004423;iduronate-2-sulfatase activity;0.0430177823103718!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0434510881594714!GO:0043681;protein import into mitochondrion;0.0450971311705164!GO:0042802;identical protein binding;0.0450971311705164!GO:0005852;eukaryotic translation initiation factor 3 complex;0.045813118326023!GO:0006611;protein export from nucleus;0.045813118326023!GO:0006378;mRNA polyadenylation;0.0461868161188444!GO:0030663;COPI coated vesicle membrane;0.0467007589710925!GO:0030126;COPI vesicle coat;0.0467007589710925!GO:0007041;lysosomal transport;0.0471519407190997!GO:0030911;TPR domain binding;0.0471519407190997!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.049302607012623!GO:0050749;apolipoprotein E receptor binding;0.049302607012623 | |||
|sample_id=10037 | |sample_id=10037 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=nucleus accumbens | |sample_tissue=nucleus accumbens | ||
|top_motifs=EGR1..3:4.27032870351;REST:4.2233675934;NHLH1,2:4.08693382917;MYFfamily:3.9576861639;AHR_ARNT_ARNT2:3.80438464692;ZFP161:3.73069369632;MED-1{core}:3.64681973629;PRRX1,2:3.58941422963;RFX1:3.58625786871;MTE{core}:3.55097693688;ATF2:3.47721041067;RREB1:3.24261941421;ZBTB6:3.22860617041;PAX5:3.22641738852;OCT4_SOX2{dimer}:3.03638256017;TFAP2B:3.02565133813;CUX2:2.95925364054;MZF1:2.93997075308;GTF2I:2.91804464166;HIC1:2.87177513928;MTF1:2.86970349373;RFX2..5_RFXANK_RFXAP:2.84825854971;SOX2:2.80210718512;PRDM1:2.80078555019;SOX5:2.68311659905;NKX2-3_NKX2-5:2.63794717718;BREu{core}:2.58930555726;SMAD1..7,9:2.52433517117;DBP:2.50965884867;NANOG:2.48197406753;SOX{8,9,10}:2.40359546932;TGIF1:2.33941120011;POU6F1:2.32357029521;LMO2:2.32203206361;MAZ:2.32138898499;NKX3-2:2.3197732737;PATZ1:2.26291294985;HOXA9_MEIS1:2.11510755522;SOX17:2.09400767902;FOXM1:2.09337206568;JUN:2.03870285271;POU5F1:2.03779733851;HBP1_HMGB_SSRP1_UBTF:2.03142199219;MAFB:2.00037193052;GFI1B:1.85853323128;NRF1:1.79782874382;RBPJ:1.78817535543;GCM1,2:1.74920927309;TFDP1:1.73667428685;NFIX:1.70872056886;EP300:1.63504865519;LEF1_TCF7_TCF7L1,2:1.618221466;EBF1:1.61360301566;CDC5L:1.53818718405;SP1:1.51287501695;GATA4:1.49315868799;FOX{F1,F2,J1}:1.48391189695;ADNP_IRX_SIX_ZHX:1.47514429167;PAX6:1.43250650724;XBP1:1.40325188865;TLX2:1.39773478084;KLF4:1.35516192955;MYOD1:1.34241659269;GTF2A1,2:1.29198398326;ZNF238:1.27571486135;HOX{A4,D4}:1.27518958465;NFIL3:1.26542444301;ARID5B:1.23790760184;HMGA1,2:1.18691158484;ESRRA:1.17161331062;SREBF1,2:1.17049272992;CRX:1.04749051458;POU3F1..4:1.02160064427;CREB1:0.952991641266;HAND1,2:0.948906275725;ALX1:0.941706454401;ZNF423:0.930234045763;FOXN1:0.918874913643;ZNF143:0.911320571171;RORA:0.900188867757;HMX1:0.889630988269;MEF2{A,B,C,D}:0.872475306853;STAT1,3:0.872411323616;GFI1:0.842705753056;FOXP3:0.796247587869;TFAP2{A,C}:0.793718329446;T:0.792691725409;PBX1:0.760567366042;ZEB1:0.721370975057;NKX6-1,2:0.719403630478;FOXQ1:0.718504090982;VSX1,2:0.657060566957;ONECUT1,2:0.637642514244;ZIC1..3:0.63669570231;TLX1..3_NFIC{dimer}:0.591764250723;YY1:0.538175713941;TBX4,5:0.538077390932;FOXP1:0.524031295774;BPTF:0.518761007374;ZNF384:0.484846311544;SPZ1:0.47649144113;MYBL2:0.458448015353;PAX1,9:0.457140202432;FOX{D1,D2}:0.454288496626;ATF5_CREB3:0.435303106827;bHLH_family:0.421812483231;NR3C1:0.384628679776;AR:0.367462597733;ATF4:0.356894167757;XCPE1{core}:0.351030368304;GZF1:0.335138891844;PDX1:0.30871789012;PAX2:0.231070069701;LHX3,4:0.134011233187;FOX{I1,J2}:0.119671407096;NFY{A,B,C}:0.0991551945353;IRF7:-0.0330992057697;IKZF1:-0.0793769720466;POU1F1:-0.0846638451346;HOX{A6,A7,B6,B7}:-0.116179063589;NFE2L2:-0.122992381177;SNAI1..3:-0.125917692428;NANOG{mouse}:-0.172851784003;HSF1,2:-0.174410747243;NFATC1..3:-0.204592435637;PAX3,7:-0.216933039508;PAX4:-0.237006897104;TFAP4:-0.239545483858;TEF:-0.272977061829;GATA6:-0.302266930915;FOXD3:-0.350429837441;IKZF2:-0.359074039005;ZNF148:-0.396727205889;PAX8:-0.398494297676;FOXO1,3,4:-0.400433437684;FOXA2:-0.422777744036;TOPORS:-0.447310509405;NR5A1,2:-0.458331988498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.463072801399;SPI1:-0.480223424539;IRF1,2:-0.484727949622;NFE2:-0.485864944367;TFCP2:-0.51949691668;STAT2,4,6:-0.551559013824;DMAP1_NCOR{1,2}_SMARC:-0.627880594069;NFE2L1:-0.634711288162;SPIB:-0.680480100666;ETS1,2:-0.688127348841;FOXL1:-0.694642161404;CEBPA,B_DDIT3:-0.715061169937;UFEwm:-0.716616498013;ATF6:-0.749200988441;HNF1A:-0.76016557315;TAL1_TCF{3,4,12}:-0.79975794039;ESR1:-0.805036102273;FOSL2:-0.815809416062;GLI1..3:-0.863335125865;FOS_FOS{B,L1}_JUN{B,D}:-0.877318066231;TP53:-0.894904512153;ELK1,4_GABP{A,B1}:-0.913603550594;NR1H4:-0.920775089322;TEAD1:-0.93531135345;BACH2:-1.00254288186;SRF:-1.02719983428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08239716518;HIF1A:-1.11654619284;TBP:-1.11920556721;RUNX1..3:-1.12572527792;HNF4A_NR2F1,2:-1.14217289008;NFKB1_REL_RELA:-1.18553241935;HLF:-1.21879684774;MYB:-1.31989517876;RXR{A,B,G}:-1.32457691952;E2F1..5:-1.35922589183;NKX3-1:-1.37833569373;ZBTB16:-1.4024923548;POU2F1..3:-1.43105071055;ELF1,2,4:-1.45196793654;HES1:-1.50960798392;PPARG:-1.51330304328;NKX2-1,4:-1.75832198157;RXRA_VDR{dimer}:-1.76362460337;ALX4:-1.79174792163;STAT5{A,B}:-1.79540850149;NKX2-2,8:-1.80628762244;CDX1,2,4:-1.80845257353;EVI1:-1.82256606458;EN1,2:-1.82278933602;PITX1..3:-1.9369494986;AIRE:-2.50634290409;HOX{A5,B5}:-2.56251986684;NR6A1:-3.09880515875 | |top_motifs=EGR1..3:4.27032870351;REST:4.2233675934;NHLH1,2:4.08693382917;MYFfamily:3.9576861639;AHR_ARNT_ARNT2:3.80438464692;ZFP161:3.73069369632;MED-1{core}:3.64681973629;PRRX1,2:3.58941422963;RFX1:3.58625786871;MTE{core}:3.55097693688;ATF2:3.47721041067;RREB1:3.24261941421;ZBTB6:3.22860617041;PAX5:3.22641738852;OCT4_SOX2{dimer}:3.03638256017;TFAP2B:3.02565133813;CUX2:2.95925364054;MZF1:2.93997075308;GTF2I:2.91804464166;HIC1:2.87177513928;MTF1:2.86970349373;RFX2..5_RFXANK_RFXAP:2.84825854971;SOX2:2.80210718512;PRDM1:2.80078555019;SOX5:2.68311659905;NKX2-3_NKX2-5:2.63794717718;BREu{core}:2.58930555726;SMAD1..7,9:2.52433517117;DBP:2.50965884867;NANOG:2.48197406753;SOX{8,9,10}:2.40359546932;TGIF1:2.33941120011;POU6F1:2.32357029521;LMO2:2.32203206361;MAZ:2.32138898499;NKX3-2:2.3197732737;PATZ1:2.26291294985;HOXA9_MEIS1:2.11510755522;SOX17:2.09400767902;FOXM1:2.09337206568;JUN:2.03870285271;POU5F1:2.03779733851;HBP1_HMGB_SSRP1_UBTF:2.03142199219;MAFB:2.00037193052;GFI1B:1.85853323128;NRF1:1.79782874382;RBPJ:1.78817535543;GCM1,2:1.74920927309;TFDP1:1.73667428685;NFIX:1.70872056886;EP300:1.63504865519;LEF1_TCF7_TCF7L1,2:1.618221466;EBF1:1.61360301566;CDC5L:1.53818718405;SP1:1.51287501695;GATA4:1.49315868799;FOX{F1,F2,J1}:1.48391189695;ADNP_IRX_SIX_ZHX:1.47514429167;PAX6:1.43250650724;XBP1:1.40325188865;TLX2:1.39773478084;KLF4:1.35516192955;MYOD1:1.34241659269;GTF2A1,2:1.29198398326;ZNF238:1.27571486135;HOX{A4,D4}:1.27518958465;NFIL3:1.26542444301;ARID5B:1.23790760184;HMGA1,2:1.18691158484;ESRRA:1.17161331062;SREBF1,2:1.17049272992;CRX:1.04749051458;POU3F1..4:1.02160064427;CREB1:0.952991641266;HAND1,2:0.948906275725;ALX1:0.941706454401;ZNF423:0.930234045763;FOXN1:0.918874913643;ZNF143:0.911320571171;RORA:0.900188867757;HMX1:0.889630988269;MEF2{A,B,C,D}:0.872475306853;STAT1,3:0.872411323616;GFI1:0.842705753056;FOXP3:0.796247587869;TFAP2{A,C}:0.793718329446;T:0.792691725409;PBX1:0.760567366042;ZEB1:0.721370975057;NKX6-1,2:0.719403630478;FOXQ1:0.718504090982;VSX1,2:0.657060566957;ONECUT1,2:0.637642514244;ZIC1..3:0.63669570231;TLX1..3_NFIC{dimer}:0.591764250723;YY1:0.538175713941;TBX4,5:0.538077390932;FOXP1:0.524031295774;BPTF:0.518761007374;ZNF384:0.484846311544;SPZ1:0.47649144113;MYBL2:0.458448015353;PAX1,9:0.457140202432;FOX{D1,D2}:0.454288496626;ATF5_CREB3:0.435303106827;bHLH_family:0.421812483231;NR3C1:0.384628679776;AR:0.367462597733;ATF4:0.356894167757;XCPE1{core}:0.351030368304;GZF1:0.335138891844;PDX1:0.30871789012;PAX2:0.231070069701;LHX3,4:0.134011233187;FOX{I1,J2}:0.119671407096;NFY{A,B,C}:0.0991551945353;IRF7:-0.0330992057697;IKZF1:-0.0793769720466;POU1F1:-0.0846638451346;HOX{A6,A7,B6,B7}:-0.116179063589;NFE2L2:-0.122992381177;SNAI1..3:-0.125917692428;NANOG{mouse}:-0.172851784003;HSF1,2:-0.174410747243;NFATC1..3:-0.204592435637;PAX3,7:-0.216933039508;PAX4:-0.237006897104;TFAP4:-0.239545483858;TEF:-0.272977061829;GATA6:-0.302266930915;FOXD3:-0.350429837441;IKZF2:-0.359074039005;ZNF148:-0.396727205889;PAX8:-0.398494297676;FOXO1,3,4:-0.400433437684;FOXA2:-0.422777744036;TOPORS:-0.447310509405;NR5A1,2:-0.458331988498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.463072801399;SPI1:-0.480223424539;IRF1,2:-0.484727949622;NFE2:-0.485864944367;TFCP2:-0.51949691668;STAT2,4,6:-0.551559013824;DMAP1_NCOR{1,2}_SMARC:-0.627880594069;NFE2L1:-0.634711288162;SPIB:-0.680480100666;ETS1,2:-0.688127348841;FOXL1:-0.694642161404;CEBPA,B_DDIT3:-0.715061169937;UFEwm:-0.716616498013;ATF6:-0.749200988441;HNF1A:-0.76016557315;TAL1_TCF{3,4,12}:-0.79975794039;ESR1:-0.805036102273;FOSL2:-0.815809416062;GLI1..3:-0.863335125865;FOS_FOS{B,L1}_JUN{B,D}:-0.877318066231;TP53:-0.894904512153;ELK1,4_GABP{A,B1}:-0.913603550594;NR1H4:-0.920775089322;TEAD1:-0.93531135345;BACH2:-1.00254288186;SRF:-1.02719983428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08239716518;HIF1A:-1.11654619284;TBP:-1.11920556721;RUNX1..3:-1.12572527792;HNF4A_NR2F1,2:-1.14217289008;NFKB1_REL_RELA:-1.18553241935;HLF:-1.21879684774;MYB:-1.31989517876;RXR{A,B,G}:-1.32457691952;E2F1..5:-1.35922589183;NKX3-1:-1.37833569373;ZBTB16:-1.4024923548;POU2F1..3:-1.43105071055;ELF1,2,4:-1.45196793654;HES1:-1.50960798392;PPARG:-1.51330304328;NKX2-1,4:-1.75832198157;RXRA_VDR{dimer}:-1.76362460337;ALX4:-1.79174792163;STAT5{A,B}:-1.79540850149;NKX2-2,8:-1.80628762244;CDX1,2,4:-1.80845257353;EVI1:-1.82256606458;EN1,2:-1.82278933602;PITX1..3:-1.9369494986;AIRE:-2.50634290409;HOX{A5,B5}:-2.56251986684;NR6A1:-3.09880515875 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10037-101F1;search_select_hide=table117:FF:10037-101F1 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | nucleus accumbens, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10644 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10644
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10644
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0299 |
| 10 | 10 | 0.0264 |
| 100 | 100 | 0.26 |
| 101 | 101 | 0.717 |
| 102 | 102 | 0.818 |
| 103 | 103 | 0.209 |
| 104 | 104 | 0.163 |
| 105 | 105 | 0.372 |
| 106 | 106 | 0.0516 |
| 107 | 107 | 0.126 |
| 108 | 108 | 0.771 |
| 109 | 109 | 0.00923 |
| 11 | 11 | 0.0136 |
| 110 | 110 | 0.0458 |
| 111 | 111 | 0.0536 |
| 112 | 112 | 0.351 |
| 113 | 113 | 0.658 |
| 114 | 114 | 0.0847 |
| 115 | 115 | 0.951 |
| 116 | 116 | 0.159 |
| 117 | 117 | 0.00991 |
| 118 | 118 | 0.12 |
| 119 | 119 | 0.0902 |
| 12 | 12 | 0.838 |
| 120 | 120 | 0.13 |
| 121 | 121 | 0.646 |
| 122 | 122 | 0.564 |
| 123 | 123 | 0.41 |
| 124 | 124 | 0.072 |
| 125 | 125 | 0.177 |
| 126 | 126 | 0.0343 |
| 127 | 127 | 0.466 |
| 128 | 128 | 0.157 |
| 129 | 129 | 0.543 |
| 13 | 13 | 0.00207 |
| 130 | 130 | 0.679 |
| 131 | 131 | 0.0397 |
| 132 | 132 | 0.732 |
| 133 | 133 | 0.0012 |
| 134 | 134 | 0.296 |
| 135 | 135 | 0.192 |
| 136 | 136 | 0.0133 |
| 137 | 137 | 0.751 |
| 138 | 138 | 0.818 |
| 139 | 139 | 0.0777 |
| 14 | 14 | 0.883 |
| 140 | 140 | 0.0974 |
| 141 | 141 | 0.185 |
| 142 | 142 | 0.772 |
| 143 | 143 | 0.0109 |
| 144 | 144 | 0.816 |
| 145 | 145 | 0.0964 |
| 146 | 146 | 0.585 |
| 147 | 147 | 0.926 |
| 148 | 148 | 0.0932 |
| 149 | 149 | 0.332 |
| 15 | 15 | 0.0805 |
| 150 | 150 | 0.178 |
| 151 | 151 | 0.595 |
| 152 | 152 | 0.125 |
| 153 | 153 | 0.736 |
| 154 | 154 | 0.576 |
| 155 | 155 | 0.354 |
| 156 | 156 | 0.492 |
| 157 | 157 | 0.494 |
| 158 | 158 | 0.755 |
| 159 | 159 | 0.0533 |
| 16 | 16 | 0.0659 |
| 160 | 160 | 0.184 |
| 161 | 161 | 0.254 |
| 162 | 162 | 0.942 |
| 163 | 163 | 0.991 |
| 164 | 164 | 0.0185 |
| 165 | 165 | 0.0374 |
| 166 | 166 | 0.86 |
| 167 | 167 | 0.283 |
| 168 | 168 | 0.621 |
| 169 | 169 | 0.00686 |
| 17 | 17 | 0.151 |
| 18 | 18 | 0.178 |
| 19 | 19 | 0.175 |
| 2 | 2 | 0.984 |
| 20 | 20 | 0.0864 |
| 21 | 21 | 0.0868 |
| 22 | 22 | 0.242 |
| 23 | 23 | 0.432 |
| 24 | 24 | 0.136 |
| 25 | 25 | 0.479 |
| 26 | 26 | 1.99153e-4 |
| 27 | 27 | 0.888 |
| 28 | 28 | 0.723 |
| 29 | 29 | 0.0121 |
| 3 | 3 | 0.0287 |
| 30 | 30 | 0.575 |
| 31 | 31 | 0.86 |
| 32 | 32 | 0.0261 |
| 33 | 33 | 0.0732 |
| 34 | 34 | 0.803 |
| 35 | 35 | 0.483 |
| 36 | 36 | 0.0835 |
| 37 | 37 | 0.0345 |
| 38 | 38 | 0.313 |
| 39 | 39 | 0.271 |
| 4 | 4 | 0.889 |
| 40 | 40 | 0.0465 |
| 41 | 41 | 0.458 |
| 42 | 42 | 0.193 |
| 43 | 43 | 0.104 |
| 44 | 44 | 0.0872 |
| 45 | 45 | 0.805 |
| 46 | 46 | 0.0534 |
| 47 | 47 | 0.0576 |
| 48 | 48 | 0.0545 |
| 49 | 49 | 0.12 |
| 5 | 5 | 0.437 |
| 50 | 50 | 0.368 |
| 51 | 51 | 0.51 |
| 52 | 52 | 0.658 |
| 53 | 53 | 0.954 |
| 54 | 54 | 0.467 |
| 55 | 55 | 0.349 |
| 56 | 56 | 0.484 |
| 57 | 57 | 0.23 |
| 58 | 58 | 0.29 |
| 59 | 59 | 0.121 |
| 6 | 6 | 0.569 |
| 60 | 60 | 0.0831 |
| 61 | 61 | 0.0874 |
| 62 | 62 | 0.168 |
| 63 | 63 | 0.158 |
| 64 | 64 | 0.173 |
| 65 | 65 | 0.26 |
| 66 | 66 | 0.271 |
| 67 | 67 | 0.329 |
| 68 | 68 | 0.395 |
| 69 | 69 | 0.28 |
| 7 | 7 | 0.0696 |
| 70 | 70 | 0.0142 |
| 71 | 71 | 0.0102 |
| 72 | 72 | 0.449 |
| 73 | 73 | 0.0419 |
| 74 | 74 | 0.525 |
| 75 | 75 | 0.0266 |
| 76 | 76 | 0.36 |
| 77 | 77 | 0.188 |
| 78 | 78 | 0.002 |
| 79 | 79 | 0.134 |
| 8 | 8 | 0.0503 |
| 80 | 80 | 0.976 |
| 81 | 81 | 0.502 |
| 82 | 82 | 0.387 |
| 83 | 83 | 0.219 |
| 84 | 84 | 0.713 |
| 85 | 85 | 0.182 |
| 86 | 86 | 0.203 |
| 87 | 87 | 0.00611 |
| 88 | 88 | 0.843 |
| 89 | 89 | 0.497 |
| 9 | 9 | 0.545 |
| 90 | 90 | 0.0365 |
| 91 | 91 | 0.309 |
| 92 | 92 | 0.4 |
| 93 | 93 | 0.784 |
| 94 | 94 | 0.0575 |
| 95 | 95 | 0.031 |
| 96 | 96 | 0.9 |
| 97 | 97 | 0.778 |
| 98 | 98 | 0.173 |
| 99 | 99 | 0.635 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10644
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001882 (nucleus accumbens)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000349 (limbic system)
0005403 (ventral striatum)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010037 (human nucleus accumbens - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
