FF:10072-101I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001872 | |DRA_sample_Accession=CAGE@SAMD00004742 | ||
|accession_numbers=CAGE;DRX008703;DRR009575;DRZ001000;DRZ002385;DRZ012350;DRZ013735 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001872,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010072 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chrX:25034067..25034088,-!p1@ARX!2.64!439.77!ARX;;chr7:31380292..31380351,-!p1@NEUROD6!2.52!327.64!NEUROD6;;chr14:29235961..29236008,+!p1@FOXG1!2.46!284.97!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.44!274.03!SOX11;;chr17:37764128..37764258,-!p1@NEUROD2!2.41!257.08!NEUROD2;;chr2:2334997..2335053,-!p1@MYT1L!2.39!245.59!MYT1L;;chr1:244214577..244214593,+!p1@ZNF238!2.28!188.16!ZNF238;;chr2:200322229..200322251,-!p3@SATB2!2.25!178.86!SATB2;;chr5:88178983..88179012,-!p1@MEF2C!2.18!1097.23!MEF2C;;chr4:81118647..81118666,+!p1@PRDM8!2.17!190.89!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.16!143.31!POU3F3;;chr14:29234581..29234601,+!p2@FOXG1!2.13!135.10!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.13!133.46!TBR1;;chr9:77112244..77112262,+!p1@RORB!2.11!142.76!RORB;;chr2:172967621..172967637,-!p1@DLX2!2.03!270.21!DLX2;;chr21:34442439..34442455,+!p1@OLIG1!2.02!102.83!OLIG1;;chr8:93107451..93107468,-!p2@RUNX1T1!1.98!93.53!RUNX1T1;;chr19:13135582..13135600,+!p3@NFIX!1.96!89.70!NFIX;;chr12:103351444..103351461,+!p1@ASCL1!1.95!88.61!ASCL1;;chr2:5832493..5832507,+!p2@SOX11!1.94!86.97!SOX11;;chr2:200322723..200322739,-!p6@SATB2!1.93!84.78!SATB2;;chr9:126773880..126773895,+!p2@LHX2!1.93!83.69!LHX2;;chr1:2461692..2461710,-!p1@HES5!1.90!78.76!HES5;;chr2:2335109..2335134,-!p2@MYT1L!1.88!74.94!MYT1L;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.39!SOX2;;chr7:96654133..96654150,-!p1@DLX5!1.86!71.65!DLX5;;chr2:145277882..145277967,-!p3@ZEB2!1.83!112.68!ZEB2;;chr12:24102576..24102623,-!p2@SOX5!1.81!64.00!SOX5;;chr2:166428839..166428859,+!p2@CSRNP3!1.81!63.45!CSRNP3;;chr13:72441315..72441454,-!p1@DACH1!1.80!121.98!DACH1;;chrX:82763292..82763317,+!p1@POU3F4!1.80!62.36!POU3F4;;chr9:14314131..14314147,-!p2@NFIB!1.79!318.89!NFIB;;chr2:162272889..162272915,+!p2@TBR1!1.77!58.53!TBR1;;chr1:151032922..151032951,+!p2@MLLT11!1.75!89.70!MLLT11;;chr20:20348740..20348757,+!p1@INSM1!1.74!54.15!INSM1;;chr2:200322259..200322280,-!p5@SATB2!1.71!50.87!SATB2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.71!50.32!RUNX1T1;;chr2:60780607..60780624,-!p2@BCL11A!1.70!146.04!BCL11A;;chr1:214161272..214161322,+!p1@PROX1!1.69!66.73!PROX1;;chr8:65492756..65492768,+!p2@BHLHE22!1.69!48.13!BHLHE22;;chr14:33403881..33403924,+!p1@NPAS3!1.69!47.59!NPAS3;;chr2:172949484..172949522,+!p1@DLX1!1.69!47.59!DLX1;;chr2:239148671..239148686,-!p1@HES6!1.68!166.28!HES6;;chr2:60781201..60781258,-!p3@BCL11A!1.68!47.04!BCL11A;;chr19:38720294..38720348,-!p1@DPF1!1.67!56.89!DPF1;;chr2:200320768..200320800,-!p4@SATB2!1.67!45.40!SATB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.66!64.00!CSRNP3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.66!44.85!POU3F3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.66!44.85!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.66!44.85!OLIG2;;chr18:53070846..53070902,-!p6@TCF4!1.66!44.85!TCF4;;chr5:88179017..88179046,-!p2@MEF2C!1.64!165.19!MEF2C;;chr2:175199675..175199688,+!p1@SP9!1.64!42.66!SP9;;chr9:126774018..126774055,+!p1@LHX2!1.64!42.66!LHX2;;chrX:84498989..84499003,+!p1@ZNF711!1.62!55.24!ZNF711;;chr2:16080659..16080685,+!p1@MYCN!1.62!41.02!MYCN;;chr2:60780753..60780800,-!p1@BCL11A!1.61!188.16!BCL11A;;chr14:29236269..29236285,+!p3@FOXG1!1.61!39.93!FOXG1;;chr8:93115274..93115323,-!p4@RUNX1T1!1.61!39.38!RUNX1T1;;chr1:244219775..244219893,+!p2@ZNF238!1.60!51.96!ZNF238;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!38.84!ZBED1;;chr5:88179195..88179224,-!p3@MEF2C!1.58!58.53!MEF2C;;chr5:88179271..88179286,-!p7@MEF2C!1.58!37.19!MEF2C;;chr2:172950227..172950249,+!p2@DLX1!1.57!36.10!DLX1;;chr1:61548374..61548415,+!p4@NFIA!1.56!65.09!NFIA;;chr2:200325204..200325243,-!p7@SATB2!1.56!35.01!SATB2;;chr6:21593973..21593988,+!p1@SOX4!1.55!1169.98!SOX4;;chr9:20621927..20621996,-!p3@MLLT3!1.55!57.43!MLLT3;;chr2:200322654..200322707,-!p2@SATB2!1.55!49.77!SATB2;;chr1:244214611..244214624,+!p4@ZNF238!1.55!34.46!ZNF238;;chr18:53257027..53257052,-!p3@TCF4!1.53!127.45!TCF4;;chr19:13134772..13134822,+!p2@NFIX!1.53!48.13!NFIX;;chr18:53254566..53254567,-!p8@TCF4!1.52!51.96!TCF4;;chr2:145277640..145277771,-!p1@ZEB2!1.50!388.35!ZEB2;;chr5:88179230..88179270,-!p4@MEF2C!1.50!59.07!MEF2C;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.19!SOX5;;chr2:200213794..200213807,-!p9@SATB2!1.47!28.44!SATB2;;chr4:113437332..113437337,-!p1@NEUROG2!1.46!27.90!NEUROG2;;chr9:14314106..14314119,-!p5@NFIB!1.45!48.13!NFIB;;chr1:197886461..197886558,+!p1@LHX9!1.45!27.35!LHX9;;chr2:60780580..60780590,-!p9@BCL11A!1.45!27.35!BCL11A;;chr3:114173720..114173794,-!p6@ZBTB20!1.45!27.35!ZBTB20;;chr3:181429741..181429767,+!p2@SOX2!1.45!27.35!SOX2;;chrX:84499081..84499115,+!p2@ZNF711!1.44!38.84!ZNF711;;chr9:124991204..124991246,-!p1@LHX6!1.44!26.80!LHX6;;chr2:162272716..162272753,+!p3@TBR1!1.44!26.25!TBR1;;chr5:124082322..124082364,-!p1@ZNF608!1.43!65.09!ZNF608;;chr7:113726357..113726443,+!p1@FOXP2!1.43!44.30!FOXP2;;chr18:53068911..53068935,-!p4@TCF4!1.43!28.99!TCF4;;chr7:100065686..100065701,-!p2@TSC22D4!1.43!25.71!TSC22D4;;chr2:2335070..2335098,-!p4@MYT1L!1.42!25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CREB5!0.62!33.37!CREB5;;chr7:42276822..42276895,-!p2@GLI3!0.62!10.94!GLI3;;chr19:8942962..8942987,-!p1@ZNF558!0.62!9.85!ZNF558;;chr15:96875041..96875052,+!p17@NR2F2!0.62!4.92!NR2F2;;chr1:164528297..164528309,+!p9@PBX1!0.62!4.38!PBX1;;chr1:23857325..23857416,-!p2@E2F2!0.62!3.83!E2F2;;chr5:92920456..92920488,+!p9@NR2F1!0.62!3.83!NR2F1;;chr20:44718538..44718612,-!p1@NCOA5!0.61!100.64!NCOA5;;chr7:64467057..64467078,-!p1@ZNF117!0.61!69.47!ZNF117;;chr19:21324829..21324855,+!p1@ZNF431!0.61!59.07!ZNF431;;chr5:138629389..138629416,+!p4@MATR3!0.61!45.40!MATR3;;chr19:37019136..37019178,-!p1@ZNF260!0.61!30.08!ZNF260;;chr2:25564750..25564807,-!p1@DNMT3A!0.61!13.67!DNMT3A;;chr2:66662249..66662267,+!p2@MEIS1!0.61!13.67!MEIS1;;chr9:129622904..129622956,+!p1@ZBTB34!0.61!12.58!ZBTB34;;chr3:71007886..71007887,-!p8@FOXP1!0.61!11.49!FOXP1;;chrX:129402768..129402796,-!p2@ZNF280C!0.61!10.94!ZNF280C;;chrX:106959661..106959763,-!p4@TSC22D3!0.61!10.39!TSC22D3;;chr6:85474299..85474324,-!p1@TBX18!0.61!6.02!TBX18;;chr8:123793988..123794016,+!p1@ZHX2!0.61!6.02!ZHX2;;chr3:141820622..141820635,-!p5@TFDP2!0.61!6.02!TFDP2;;chr8:145980968..145980996,-!p2@ZNF251!0.61!4.92!ZNF251;;chr6:136599737..136599767,-!p2@BCLAF1!0.61!4.38!BCLAF1;;chr6:157099387..157099403,+!p8@ARID1B!0.61!4.38!ARID1B;;chr15:57025675..57025718,-!p1@ZNF280D!0.60!77.67!ZNF280D;;chr3:14989076..14989113,+!p1@NR2C2!0.60!74.39!NR2C2;;chr12:95467267..95467350,-!p1@NR2C1!0.60!42.66!NR2C1;;chr19:21264991..21265026,+!p1@ZNF714!0.60!23.52!ZNF714;;chr19:21512144..21512191,-!p2@ZNF708!0.60!16.41!ZNF708;;chr8:81398444..81398472,+!p1@ZBTB10!0.60!14.22!ZBTB10;;chr6:134274295..134274308,+!p2@TBPL1!0.60!11.49!TBPL1;;chr20:49547593..49547611,-!p3@ADNP!0.60!11.49!ADNP;;chr16:4323015..4323067,-!p2@TFAP4!0.60!9.30!TFAP4;;chr15:90895471..90895543,+!p1@ZNF774!0.60!7.66!ZNF774;;chr7:21467642..21467671,+!p2@SP4!0.60!7.66!SP4;;chr19:44331555..44331581,+!p2@ZNF283!0.60!7.11!ZNF283;;chr1:211433151..211433191,+!p5@RCOR3!0.60!7.11!RCOR3;;chr2:113033141..113033162,+!p2@ZC3H6!0.60!7.11!ZC3H6;;chr19:58373157..58373159,+!p4@ZNF587!0.60!6.02!ZNF587;;chr1:247171347..247171366,-!p2@ZNF695!0.60!6.02!ZNF695;;chr9:102584159..102584174,+!p2@NR4A3!0.60!6.02!NR4A3;;chr14:64970401..64970423,-!p7@ZBTB25!0.60!5.47!ZBTB25;;chr4:331619..331630,+!p2@ZNF141!0.60!4.92!ZNF141;;chr18:56530136..56530199,+!p3@ZNF532!0.60!4.92!ZNF532;;chr7:14029312..14029325,-!p4@ETV1!0.60!3.83!ETV1;;chr1:35658736..35658754,-!p1@SFPQ!0.59!1282.66!SFPQ;;chr1:202777535..202777556,-!p1@KDM5B!0.59!119.24!KDM5B;;chr9:2015335..2015370,+!p1@SMARCA2!0.59!43.21!SMARCA2;;chr19:35168567..35168620,+!p1@ZNF302!0.59!41.02!ZNF302;;chr15:96873984..96873999,+!p3@NR2F2!0.59!25.71!NR2F2;;chr3:44519131..44519186,-!p1@ZNF445!0.59!19.14!ZNF445;;chr3:48282587..48282603,+!p1@ZNF589!0.59!15.32!ZNF589;;chr4:492909..492968,-!p2@ZNF721!0.59!15.32!ZNF721;;chr3:71632864..71632885,-!p4@FOXP1!0.59!11.49!FOXP1;;chr4:83821835..83821896,+!p1@THAP9!0.59!10.94!THAP9;;chr18:45457478..45457517,-!p6@SMAD2!0.59!9.85!SMAD2;;chr1:42800848..42800859,-!p2@FOXJ3!0.59!9.30!FOXJ3;;chr19:37958285..37958317,-!p3@ZNF569!0.59!8.75!ZNF569;;chr6:144329500..144329526,-!p4@PLAGL1!0.59!7.66!PLAGL1;;chr7:14028488..14028516,-!p2@ETV1!0.59!3.28!ETV1;;chr1:151319283..151319314,-!p4@RFX5!0.59!3.28!RFX5;;chrX:77041685..77041716,-!p1@ATRX!0.58!96.81!ATRX;;chr6:87865262..87865311,+!p1@ZNF292!0.58!45.40!ZNF292;;chr7:99214559..99214601,+!p1@ZNF498!0.58!43.21!ZNF498;;chr4:124374..124410,+!p2@ZNF718!0.58!35.55!ZNF718;;chr15:85144229..85144273,+!p1@ZSCAN2!0.58!18.05!ZSCAN2;;chr19:23869970..23869991,-!p1@ZNF675!0.58!12.58!ZNF675;;chr5:76383017..76383068,-!p1@ZBED3!0.58!12.03!ZBED3;;chr19:24097675..24097699,+!p1@ZNF726!0.58!10.94!ZNF726;;chr19:53758058..53758088,-!p2@ZNF677!0.58!10.94!ZNF677;;chr1:35656508..35656584,-!p2@SFPQ!0.58!10.39!SFPQ;;chr19:11877838..11877915,+!p1@ZNF441!0.58!10.39!ZNF441;;chr19:44809143..44809187,-!p1@ZNF235!0.58!9.85!ZNF235;;chr8:146228226..146228264,-!p2@ZNF252!0.58!7.66!ZNF252P;;chr3:125094150..125094176,-!p2@ZNF148!0.58!7.11!ZNF148;;chr1:151253991..151254031,+!p2@ZNF687!0.58!6.02!ZNF687;;chr19:24097706..24097731,+!p2@ZNF726!0.58!6.02!ZNF726;;chr6:21594845..21594908,+!p6@SOX4!0.58!4.92!SOX4;;chr2:145274981..145274994,-!p9@ZEB2!0.58!4.38!ZEB2;;chr14:24025106..24025172,-!p2@ZFHX2!0.58!3.83!ZFHX2;;chr1:91487352..91487376,-!p9@ZNF644!0.58!3.83!ZNF644;;chr1:153895377..153895465,-!p1@GATAD2B!0.57!96.81!GATAD2B;;chr19:53606636..53606692,-!p1@ZNF160!0.57!61.26!ZNF160;;chr1:202777592..202777616,-!p2@KDM5B!0.57!36.65!KDM5B;;chr1:28995258..28995322,+!p1@GMEB1!0.57!25.16!GMEB1;;chr7:64363638..64363667,+!p1@ZNF273!0.57!16.41!ZNF273;;chr1:153940354..153940395,+!p1@CREB3L4!0.57!13.13!CREB3L4;;chr3:44666551..44666577,+!p2@ZNF197!0.57!12.03!ZNF197;;chr19:12721760..12721778,+!p3@ZNF791!0.57!10.94!ZNF791;;chr19:23870007..23870022,-!p2@ZNF675!0.57!10.39!ZNF675;;chr5:43121711..43121753,+!p2@ZNF131!0.57!9.30!ZNF131;;chr15:41913690..41913753,+!p2@MGA!0.57!7.66!MGA;;chr1:211432887..211432903,+!p4@RCOR3!0.57!7.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| |expression_enrichment_score=chrX:25034067..25034088,-!p1@ARX!2.64!439.77!ARX;;chr7:31380292..31380351,-!p1@NEUROD6!2.52!327.64!NEUROD6;;chr14:29235961..29236008,+!p1@FOXG1!2.46!284.97!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.44!274.03!SOX11;;chr17:37764128..37764258,-!p1@NEUROD2!2.41!257.08!NEUROD2;;chr2:2334997..2335053,-!p1@MYT1L!2.39!245.59!MYT1L;;chr1:244214577..244214593,+!p1@ZNF238!2.28!188.16!ZNF238;;chr2:200322229..200322251,-!p3@SATB2!2.25!178.86!SATB2;;chr5:88178983..88179012,-!p1@MEF2C!2.18!1097.23!MEF2C;;chr4:81118647..81118666,+!p1@PRDM8!2.17!190.89!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.16!143.31!POU3F3;;chr14:29234581..29234601,+!p2@FOXG1!2.13!135.10!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.13!133.46!TBR1;;chr9:77112244..77112262,+!p1@RORB!2.11!142.76!RORB;;chr2:172967621..172967637,-!p1@DLX2!2.03!270.21!DLX2;;chr21:34442439..34442455,+!p1@OLIG1!2.02!102.83!OLIG1;;chr8:93107451..93107468,-!p2@RUNX1T1!1.98!93.53!RUNX1T1;;chr19:13135582..13135600,+!p3@NFIX!1.96!89.70!NFIX;;chr12:103351444..103351461,+!p1@ASCL1!1.95!88.61!ASCL1;;chr2:5832493..5832507,+!p2@SOX11!1.94!86.97!SOX11;;chr2:200322723..200322739,-!p6@SATB2!1.93!84.78!SATB2;;chr9:126773880..126773895,+!p2@LHX2!1.93!83.69!LHX2;;chr1:2461692..2461710,-!p1@HES5!1.90!78.76!HES5;;chr2:2335109..2335134,-!p2@MYT1L!1.88!74.94!MYT1L;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.39!SOX2;;chr7:96654133..96654150,-!p1@DLX5!1.86!71.65!DLX5;;chr2:145277882..145277967,-!p3@ZEB2!1.83!112.68!ZEB2;;chr12:24102576..24102623,-!p2@SOX5!1.81!64.00!SOX5;;chr2:166428839..166428859,+!p2@CSRNP3!1.81!63.45!CSRNP3;;chr13:72441315..72441454,-!p1@DACH1!1.80!121.98!DACH1;;chrX:82763292..82763317,+!p1@POU3F4!1.80!62.36!POU3F4;;chr9:14314131..14314147,-!p2@NFIB!1.79!318.89!NFIB;;chr2:162272889..162272915,+!p2@TBR1!1.77!58.53!TBR1;;chr1:151032922..151032951,+!p2@MLLT11!1.75!89.70!MLLT11;;chr20:20348740..20348757,+!p1@INSM1!1.74!54.15!INSM1;;chr2:200322259..200322280,-!p5@SATB2!1.71!50.87!SATB2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.71!50.32!RUNX1T1;;chr2:60780607..60780624,-!p2@BCL11A!1.70!146.04!BCL11A;;chr1:214161272..214161322,+!p1@PROX1!1.69!66.73!PROX1;;chr8:65492756..65492768,+!p2@BHLHE22!1.69!48.13!BHLHE22;;chr14:33403881..33403924,+!p1@NPAS3!1.69!47.59!NPAS3;;chr2:172949484..172949522,+!p1@DLX1!1.69!47.59!DLX1;;chr2:239148671..239148686,-!p1@HES6!1.68!166.28!HES6;;chr2:60781201..60781258,-!p3@BCL11A!1.68!47.04!BCL11A;;chr19:38720294..38720348,-!p1@DPF1!1.67!56.89!DPF1;;chr2:200320768..200320800,-!p4@SATB2!1.67!45.40!SATB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.66!64.00!CSRNP3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.66!44.85!POU3F3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.66!44.85!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.66!44.85!OLIG2;;chr18:53070846..53070902,-!p6@TCF4!1.66!44.85!TCF4;;chr5:88179017..88179046,-!p2@MEF2C!1.64!165.19!MEF2C;;chr2:175199675..175199688,+!p1@SP9!1.64!42.66!SP9;;chr9:126774018..126774055,+!p1@LHX2!1.64!42.66!LHX2;;chrX:84498989..84499003,+!p1@ZNF711!1.62!55.24!ZNF711;;chr2:16080659..16080685,+!p1@MYCN!1.62!41.02!MYCN;;chr2:60780753..60780800,-!p1@BCL11A!1.61!188.16!BCL11A;;chr14:29236269..29236285,+!p3@FOXG1!1.61!39.93!FOXG1;;chr8:93115274..93115323,-!p4@RUNX1T1!1.61!39.38!RUNX1T1;;chr1:244219775..244219893,+!p2@ZNF238!1.60!51.96!ZNF238;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!38.84!ZBED1;;chr5:88179195..88179224,-!p3@MEF2C!1.58!58.53!MEF2C;;chr5:88179271..88179286,-!p7@MEF2C!1.58!37.19!MEF2C;;chr2:172950227..172950249,+!p2@DLX1!1.57!36.10!DLX1;;chr1:61548374..61548415,+!p4@NFIA!1.56!65.09!NFIA;;chr2:200325204..200325243,-!p7@SATB2!1.56!35.01!SATB2;;chr6:21593973..21593988,+!p1@SOX4!1.55!1169.98!SOX4;;chr9:20621927..20621996,-!p3@MLLT3!1.55!57.43!MLLT3;;chr2:200322654..200322707,-!p2@SATB2!1.55!49.77!SATB2;;chr1:244214611..244214624,+!p4@ZNF238!1.55!34.46!ZNF238;;chr18:53257027..53257052,-!p3@TCF4!1.53!127.45!TCF4;;chr19:13134772..13134822,+!p2@NFIX!1.53!48.13!NFIX;;chr18:53254566..53254567,-!p8@TCF4!1.52!51.96!TCF4;;chr2:145277640..145277771,-!p1@ZEB2!1.50!388.35!ZEB2;;chr5:88179230..88179270,-!p4@MEF2C!1.50!59.07!MEF2C;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.19!SOX5;;chr2:200213794..200213807,-!p9@SATB2!1.47!28.44!SATB2;;chr4:113437332..113437337,-!p1@NEUROG2!1.46!27.90!NEUROG2;;chr9:14314106..14314119,-!p5@NFIB!1.45!48.13!NFIB;;chr1:197886461..197886558,+!p1@LHX9!1.45!27.35!LHX9;;chr2:60780580..60780590,-!p9@BCL11A!1.45!27.35!BCL11A;;chr3:114173720..114173794,-!p6@ZBTB20!1.45!27.35!ZBTB20;;chr3:181429741..181429767,+!p2@SOX2!1.45!27.35!SOX2;;chrX:84499081..84499115,+!p2@ZNF711!1.44!38.84!ZNF711;;chr9:124991204..124991246,-!p1@LHX6!1.44!26.80!LHX6;;chr2:162272716..162272753,+!p3@TBR1!1.44!26.25!TBR1;;chr5:124082322..124082364,-!p1@ZNF608!1.43!65.09!ZNF608;;chr7:113726357..113726443,+!p1@FOXP2!1.43!44.30!FOXP2;;chr18:53068911..53068935,-!p4@TCF4!1.43!28.99!TCF4;;chr7:100065686..100065701,-!p2@TSC22D4!1.43!25.71!TSC22D4;;chr2:2335070..2335098,-!p4@MYT1L!1.42!25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CREB5!0.62!33.37!CREB5;;chr7:42276822..42276895,-!p2@GLI3!0.62!10.94!GLI3;;chr19:8942962..8942987,-!p1@ZNF558!0.62!9.85!ZNF558;;chr15:96875041..96875052,+!p17@NR2F2!0.62!4.92!NR2F2;;chr1:164528297..164528309,+!p9@PBX1!0.62!4.38!PBX1;;chr1:23857325..23857416,-!p2@E2F2!0.62!3.83!E2F2;;chr5:92920456..92920488,+!p9@NR2F1!0.62!3.83!NR2F1;;chr20:44718538..44718612,-!p1@NCOA5!0.61!100.64!NCOA5;;chr7:64467057..64467078,-!p1@ZNF117!0.61!69.47!ZNF117;;chr19:21324829..21324855,+!p1@ZNF431!0.61!59.07!ZNF431;;chr5:138629389..138629416,+!p4@MATR3!0.61!45.40!MATR3;;chr19:37019136..37019178,-!p1@ZNF260!0.61!30.08!ZNF260;;chr2:25564750..25564807,-!p1@DNMT3A!0.61!13.67!DNMT3A;;chr2:66662249..66662267,+!p2@MEIS1!0.61!13.67!MEIS1;;chr9:129622904..129622956,+!p1@ZBTB34!0.61!12.58!ZBTB34;;chr3:71007886..71007887,-!p8@FOXP1!0.61!11.49!FOXP1;;chrX:129402768..129402796,-!p2@ZNF280C!0.61!10.94!ZNF280C;;chrX:106959661..106959763,-!p4@TSC22D3!0.61!10.39!TSC22D3;;chr6:85474299..85474324,-!p1@TBX18!0.61!6.02!TBX18;;chr8:123793988..123794016,+!p1@ZHX2!0.61!6.02!ZHX2;;chr3:141820622..141820635,-!p5@TFDP2!0.61!6.02!TFDP2;;chr8:145980968..145980996,-!p2@ZNF251!0.61!4.92!ZNF251;;chr6:136599737..136599767,-!p2@BCLAF1!0.61!4.38!BCLAF1;;chr6:157099387..157099403,+!p8@ARID1B!0.61!4.38!ARID1B;;chr15:57025675..57025718,-!p1@ZNF280D!0.60!77.67!ZNF280D;;chr3:14989076..14989113,+!p1@NR2C2!0.60!74.39!NR2C2;;chr12:95467267..95467350,-!p1@NR2C1!0.60!42.66!NR2C1;;chr19:21264991..21265026,+!p1@ZNF714!0.60!23.52!ZNF714;;chr19:21512144..21512191,-!p2@ZNF708!0.60!16.41!ZNF708;;chr8:81398444..81398472,+!p1@ZBTB10!0.60!14.22!ZBTB10;;chr6:134274295..134274308,+!p2@TBPL1!0.60!11.49!TBPL1;;chr20:49547593..49547611,-!p3@ADNP!0.60!11.49!ADNP;;chr16:4323015..4323067,-!p2@TFAP4!0.60!9.30!TFAP4;;chr15:90895471..90895543,+!p1@ZNF774!0.60!7.66!ZNF774;;chr7:21467642..21467671,+!p2@SP4!0.60!7.66!SP4;;chr19:44331555..44331581,+!p2@ZNF283!0.60!7.11!ZNF283;;chr1:211433151..211433191,+!p5@RCOR3!0.60!7.11!RCOR3;;chr2:113033141..113033162,+!p2@ZC3H6!0.60!7.11!ZC3H6;;chr19:58373157..58373159,+!p4@ZNF587!0.60!6.02!ZNF587;;chr1:247171347..247171366,-!p2@ZNF695!0.60!6.02!ZNF695;;chr9:102584159..102584174,+!p2@NR4A3!0.60!6.02!NR4A3;;chr14:64970401..64970423,-!p7@ZBTB25!0.60!5.47!ZBTB25;;chr4:331619..331630,+!p2@ZNF141!0.60!4.92!ZNF141;;chr18:56530136..56530199,+!p3@ZNF532!0.60!4.92!ZNF532;;chr7:14029312..14029325,-!p4@ETV1!0.60!3.83!ETV1;;chr1:35658736..35658754,-!p1@SFPQ!0.59!1282.66!SFPQ;;chr1:202777535..202777556,-!p1@KDM5B!0.59!119.24!KDM5B;;chr9:2015335..2015370,+!p1@SMARCA2!0.59!43.21!SMARCA2;;chr19:35168567..35168620,+!p1@ZNF302!0.59!41.02!ZNF302;;chr15:96873984..96873999,+!p3@NR2F2!0.59!25.71!NR2F2;;chr3:44519131..44519186,-!p1@ZNF445!0.59!19.14!ZNF445;;chr3:48282587..48282603,+!p1@ZNF589!0.59!15.32!ZNF589;;chr4:492909..492968,-!p2@ZNF721!0.59!15.32!ZNF721;;chr3:71632864..71632885,-!p4@FOXP1!0.59!11.49!FOXP1;;chr4:83821835..83821896,+!p1@THAP9!0.59!10.94!THAP9;;chr18:45457478..45457517,-!p6@SMAD2!0.59!9.85!SMAD2;;chr1:42800848..42800859,-!p2@FOXJ3!0.59!9.30!FOXJ3;;chr19:37958285..37958317,-!p3@ZNF569!0.59!8.75!ZNF569;;chr6:144329500..144329526,-!p4@PLAGL1!0.59!7.66!PLAGL1;;chr7:14028488..14028516,-!p2@ETV1!0.59!3.28!ETV1;;chr1:151319283..151319314,-!p4@RFX5!0.59!3.28!RFX5;;chrX:77041685..77041716,-!p1@ATRX!0.58!96.81!ATRX;;chr6:87865262..87865311,+!p1@ZNF292!0.58!45.40!ZNF292;;chr7:99214559..99214601,+!p1@ZNF498!0.58!43.21!ZNF498;;chr4:124374..124410,+!p2@ZNF718!0.58!35.55!ZNF718;;chr15:85144229..85144273,+!p1@ZSCAN2!0.58!18.05!ZSCAN2;;chr19:23869970..23869991,-!p1@ZNF675!0.58!12.58!ZNF675;;chr5:76383017..76383068,-!p1@ZBED3!0.58!12.03!ZBED3;;chr19:24097675..24097699,+!p1@ZNF726!0.58!10.94!ZNF726;;chr19:53758058..53758088,-!p2@ZNF677!0.58!10.94!ZNF677;;chr1:35656508..35656584,-!p2@SFPQ!0.58!10.39!SFPQ;;chr19:11877838..11877915,+!p1@ZNF441!0.58!10.39!ZNF441;;chr19:44809143..44809187,-!p1@ZNF235!0.58!9.85!ZNF235;;chr8:146228226..146228264,-!p2@ZNF252!0.58!7.66!ZNF252P;;chr3:125094150..125094176,-!p2@ZNF148!0.58!7.11!ZNF148;;chr1:151253991..151254031,+!p2@ZNF687!0.58!6.02!ZNF687;;chr19:24097706..24097731,+!p2@ZNF726!0.58!6.02!ZNF726;;chr6:21594845..21594908,+!p6@SOX4!0.58!4.92!SOX4;;chr2:145274981..145274994,-!p9@ZEB2!0.58!4.38!ZEB2;;chr14:24025106..24025172,-!p2@ZFHX2!0.58!3.83!ZFHX2;;chr1:91487352..91487376,-!p9@ZNF644!0.58!3.83!ZNF644;;chr1:153895377..153895465,-!p1@GATAD2B!0.57!96.81!GATAD2B;;chr19:53606636..53606692,-!p1@ZNF160!0.57!61.26!ZNF160;;chr1:202777592..202777616,-!p2@KDM5B!0.57!36.65!KDM5B;;chr1:28995258..28995322,+!p1@GMEB1!0.57!25.16!GMEB1;;chr7:64363638..64363667,+!p1@ZNF273!0.57!16.41!ZNF273;;chr1:153940354..153940395,+!p1@CREB3L4!0.57!13.13!CREB3L4;;chr3:44666551..44666577,+!p2@ZNF197!0.57!12.03!ZNF197;;chr19:12721760..12721778,+!p3@ZNF791!0.57!10.94!ZNF791;;chr19:23870007..23870022,-!p2@ZNF675!0.57!10.39!ZNF675;;chr5:43121711..43121753,+!p2@ZNF131!0.57!9.30!ZNF131;;chr15:41913690..41913753,+!p2@MGA!0.57!7.66!MGA;;chr1:211432887..211432903,+!p4@RCOR3!0.57!7.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001872;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10072-101I9 | |id=FF:10072-101I9 | ||
|is_a=EFO:0002091;;FF:0010072 | |is_a=EFO:0002091;;FF:0010072 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11782 | |||
|library_id_phase_based=2:CNhs11782 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10072 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10072 | |||
|name=parietal lobe, fetal, donor1 | |name=parietal lobe, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11782,LSID820,release009,COMPLETED | |profile_hcage=CNhs11782,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Brain parietal lobe | |rna_catalog_number=Cat:RtHFN: Brain parietal lobe | ||
| Line 59: | Line 78: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 100: | ||
|top_motifs=PRRX1,2:5.48113922263;NKX2-3_NKX2-5:5.03682855568;ALX1:4.82515652086;FOXM1:4.68891341839;MZF1:4.47588510544;ZNF384:4.46912599543;ADNP_IRX_SIX_ZHX:4.4300993401;POU1F1:4.34463211512;SOX2:4.24939440641;POU6F1:4.17888491512;POU5F1:4.15176562139;AHR_ARNT_ARNT2:4.12518254119;CDC5L:4.05489544248;POU3F1..4:3.86763322887;FOXP1:3.80764647948;FOXD3:3.68863742424;PRDM1:3.67801323158;MED-1{core}:3.62593655174;ZFP161:3.52814171931;BREu{core}:3.50593884401;RREB1:3.48424027147;OCT4_SOX2{dimer}:3.46644408924;CUX2:3.45820029218;NKX6-1,2:3.30326257489;IKZF2:3.18104902745;HMGA1,2:3.13283800361;TEF:3.09330461593;MTE{core}:3.07651632751;HOX{A4,D4}:3.05016490872;HOXA9_MEIS1:3.04287865165;PITX1..3:3.01917497553;SOX17:2.93324285617;GATA4:2.89628939918;EGR1..3:2.89171137905;PAX4:2.79225448076;TGIF1:2.68006161636;BPTF:2.66451056468;RFX1:2.64320401602;SOX{8,9,10}:2.61306292645;MYFfamily:2.59490433903;T:2.59154289042;LHX3,4:2.5159293736;TFDP1:2.45810948194;LEF1_TCF7_TCF7L1,2:2.44182350971;AIRE:2.39484178908;TFAP2B:2.38232346366;GTF2I:2.3463322899;NKX3-1:2.32672714638;PATZ1:2.30746712809;NHLH1,2:2.27924375354;REST:2.25696022342;DBP:2.2535020061;ZBTB16:2.23886268648;ATF2:2.23054881361;ARID5B:2.20837749126;EVI1:2.16972973514;TOPORS:2.08425514006;GFI1:2.05275319917;ONECUT1,2:1.96476796598;KLF4:1.93605779396;ZIC1..3:1.93502120558;GFI1B:1.9007399822;NRF1:1.89405457036;MAZ:1.89026289758;ZBTB6:1.87057766136;PAX5:1.79619778585;HIC1:1.68418871709;SOX5:1.68412062412;SMAD1..7,9:1.68334416003;FOXP3:1.66253982358;PAX8:1.65796971653;RBPJ:1.63926815144;CDX1,2,4:1.5824516504;NANOG:1.55292539289;FOXQ1:1.54241125286;TLX2:1.49587091305;LMO2:1.48928761238;STAT1,3:1.36204553189;GCM1,2:1.31110491127;PAX3,7:1.2842409166;ZNF143:1.19393339867;GZF1:1.16173362254;NKX2-1,4:1.09522081493;MTF1:1.07963751343;FOXN1:1.03929397186;PAX1,9:1.02393183996;RFX2..5_RFXANK_RFXAP:0.95349715054;HBP1_HMGB_SSRP1_UBTF:0.909139429968;NKX3-2:0.817059517377;JUN:0.806254365208;CRX:0.792760565961;UFEwm:0.749441886472;YY1:0.703347040381;PBX1:0.666345523746;RORA:0.657129540682;EP300:0.605407346973;SPZ1:0.583258455792;PAX6:0.523210070947;ATF5_CREB3:0.448136702572;FOXA2:0.420274810181;FOXL1:0.411913951963;XBP1:0.395731881746;CREB1:0.370614719098;POU2F1..3:0.360023218432;MAFB:0.298892206462;PDX1:0.295377799026;NFY{A,B,C}:0.263511824618;HMX1:0.262287448556;E2F1..5:0.221664192422;ZNF423:0.140259723974;FOX{F1,F2,J1}:0.094183968873;ATF4:0.055023056824;GTF2A1,2:0.0389590571926;GATA6:0.0105675499462;SP1:-0.0350037055493;DMAP1_NCOR{1,2}_SMARC:-0.0480851959981;VSX1,2:-0.0492001610356;MEF2{A,B,C,D}:-0.0535202789365;ELK1,4_GABP{A,B1}:-0.195563042061;MYOD1:-0.216592132813;XCPE1{core}:-0.222265200165;FOX{D1,D2}:-0.228624961048;HAND1,2:-0.278331418223;NR1H4:-0.349984020175;ZEB1:-0.37899109007;PAX2:-0.425692860123;MYBL2:-0.442357611797;FOX{I1,J2}:-0.492497825515;SPIB:-0.558906124153;NANOG{mouse}:-0.566483224602;HOX{A6,A7,B6,B7}:-0.602331555593;TLX1..3_NFIC{dimer}:-0.609207270376;HNF1A:-0.618779862619;ALX4:-0.636322022365;MYB:-0.681606768454;PPARG:-0.700461243184;SPI1:-0.702259363855;NR6A1:-0.737309891237;SNAI1..3:-0.762534294927;SREBF1,2:-0.774380801836;TBP:-0.779411134008;NR3C1:-0.803192818532;HIF1A:-0.817349858004;HOX{A5,B5}:-0.824902397844;NFATC1..3:-0.843191626519;TEAD1:-0.88251927842;HNF4A_NR2F1,2:-0.931723781711;IRF7:-0.948002536807;EBF1:-0.949912238327;FOXO1,3,4:-0.951270219137;STAT2,4,6:-0.957663235632;CEBPA,B_DDIT3:-0.985071733785;TAL1_TCF{3,4,12}:-1.07253392842;IRF1,2:-1.08182627104;ZNF238:-1.09004157482;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10084135525;STAT5{A,B}:-1.12204336878;RUNX1..3:-1.12362098586;NFKB1_REL_RELA:-1.18473411714;NFIX:-1.24749426882;FOS_FOS{B,L1}_JUN{B,D}:-1.2535938381;TFAP4:-1.26389691578;HSF1,2:-1.26556533528;TP53:-1.27355240246;IKZF1:-1.31614067289;GLI1..3:-1.33570825397;TFAP2{A,C}:-1.37217123274;FOSL2:-1.37776048818;bHLH_family:-1.39564369373;NFIL3:-1.40558096234;ETS1,2:-1.4349344641;NFE2L1:-1.44338908533;NFE2L2:-1.45167051367;BACH2:-1.45767294356;NFE2:-1.50437100209;AR:-1.52713996433;ESR1:-1.75757665916;ELF1,2,4:-1.78347302595;TBX4,5:-1.78841498005;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86776078309;HLF:-1.88112136177;NR5A1,2:-2.00106477961;TFCP2:-2.01336366179;RXR{A,B,G}:-2.05577686918;NKX2-2,8:-2.06811424432;ATF6:-2.07698155457;ZNF148:-2.11555643972;SRF:-2.11909144754;EN1,2:-2.15623899037;RXRA_VDR{dimer}:-2.17561240839;ESRRA:-2.3760359239;HES1:-2.50838929296 | |top_motifs=PRRX1,2:5.48113922263;NKX2-3_NKX2-5:5.03682855568;ALX1:4.82515652086;FOXM1:4.68891341839;MZF1:4.47588510544;ZNF384:4.46912599543;ADNP_IRX_SIX_ZHX:4.4300993401;POU1F1:4.34463211512;SOX2:4.24939440641;POU6F1:4.17888491512;POU5F1:4.15176562139;AHR_ARNT_ARNT2:4.12518254119;CDC5L:4.05489544248;POU3F1..4:3.86763322887;FOXP1:3.80764647948;FOXD3:3.68863742424;PRDM1:3.67801323158;MED-1{core}:3.62593655174;ZFP161:3.52814171931;BREu{core}:3.50593884401;RREB1:3.48424027147;OCT4_SOX2{dimer}:3.46644408924;CUX2:3.45820029218;NKX6-1,2:3.30326257489;IKZF2:3.18104902745;HMGA1,2:3.13283800361;TEF:3.09330461593;MTE{core}:3.07651632751;HOX{A4,D4}:3.05016490872;HOXA9_MEIS1:3.04287865165;PITX1..3:3.01917497553;SOX17:2.93324285617;GATA4:2.89628939918;EGR1..3:2.89171137905;PAX4:2.79225448076;TGIF1:2.68006161636;BPTF:2.66451056468;RFX1:2.64320401602;SOX{8,9,10}:2.61306292645;MYFfamily:2.59490433903;T:2.59154289042;LHX3,4:2.5159293736;TFDP1:2.45810948194;LEF1_TCF7_TCF7L1,2:2.44182350971;AIRE:2.39484178908;TFAP2B:2.38232346366;GTF2I:2.3463322899;NKX3-1:2.32672714638;PATZ1:2.30746712809;NHLH1,2:2.27924375354;REST:2.25696022342;DBP:2.2535020061;ZBTB16:2.23886268648;ATF2:2.23054881361;ARID5B:2.20837749126;EVI1:2.16972973514;TOPORS:2.08425514006;GFI1:2.05275319917;ONECUT1,2:1.96476796598;KLF4:1.93605779396;ZIC1..3:1.93502120558;GFI1B:1.9007399822;NRF1:1.89405457036;MAZ:1.89026289758;ZBTB6:1.87057766136;PAX5:1.79619778585;HIC1:1.68418871709;SOX5:1.68412062412;SMAD1..7,9:1.68334416003;FOXP3:1.66253982358;PAX8:1.65796971653;RBPJ:1.63926815144;CDX1,2,4:1.5824516504;NANOG:1.55292539289;FOXQ1:1.54241125286;TLX2:1.49587091305;LMO2:1.48928761238;STAT1,3:1.36204553189;GCM1,2:1.31110491127;PAX3,7:1.2842409166;ZNF143:1.19393339867;GZF1:1.16173362254;NKX2-1,4:1.09522081493;MTF1:1.07963751343;FOXN1:1.03929397186;PAX1,9:1.02393183996;RFX2..5_RFXANK_RFXAP:0.95349715054;HBP1_HMGB_SSRP1_UBTF:0.909139429968;NKX3-2:0.817059517377;JUN:0.806254365208;CRX:0.792760565961;UFEwm:0.749441886472;YY1:0.703347040381;PBX1:0.666345523746;RORA:0.657129540682;EP300:0.605407346973;SPZ1:0.583258455792;PAX6:0.523210070947;ATF5_CREB3:0.448136702572;FOXA2:0.420274810181;FOXL1:0.411913951963;XBP1:0.395731881746;CREB1:0.370614719098;POU2F1..3:0.360023218432;MAFB:0.298892206462;PDX1:0.295377799026;NFY{A,B,C}:0.263511824618;HMX1:0.262287448556;E2F1..5:0.221664192422;ZNF423:0.140259723974;FOX{F1,F2,J1}:0.094183968873;ATF4:0.055023056824;GTF2A1,2:0.0389590571926;GATA6:0.0105675499462;SP1:-0.0350037055493;DMAP1_NCOR{1,2}_SMARC:-0.0480851959981;VSX1,2:-0.0492001610356;MEF2{A,B,C,D}:-0.0535202789365;ELK1,4_GABP{A,B1}:-0.195563042061;MYOD1:-0.216592132813;XCPE1{core}:-0.222265200165;FOX{D1,D2}:-0.228624961048;HAND1,2:-0.278331418223;NR1H4:-0.349984020175;ZEB1:-0.37899109007;PAX2:-0.425692860123;MYBL2:-0.442357611797;FOX{I1,J2}:-0.492497825515;SPIB:-0.558906124153;NANOG{mouse}:-0.566483224602;HOX{A6,A7,B6,B7}:-0.602331555593;TLX1..3_NFIC{dimer}:-0.609207270376;HNF1A:-0.618779862619;ALX4:-0.636322022365;MYB:-0.681606768454;PPARG:-0.700461243184;SPI1:-0.702259363855;NR6A1:-0.737309891237;SNAI1..3:-0.762534294927;SREBF1,2:-0.774380801836;TBP:-0.779411134008;NR3C1:-0.803192818532;HIF1A:-0.817349858004;HOX{A5,B5}:-0.824902397844;NFATC1..3:-0.843191626519;TEAD1:-0.88251927842;HNF4A_NR2F1,2:-0.931723781711;IRF7:-0.948002536807;EBF1:-0.949912238327;FOXO1,3,4:-0.951270219137;STAT2,4,6:-0.957663235632;CEBPA,B_DDIT3:-0.985071733785;TAL1_TCF{3,4,12}:-1.07253392842;IRF1,2:-1.08182627104;ZNF238:-1.09004157482;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10084135525;STAT5{A,B}:-1.12204336878;RUNX1..3:-1.12362098586;NFKB1_REL_RELA:-1.18473411714;NFIX:-1.24749426882;FOS_FOS{B,L1}_JUN{B,D}:-1.2535938381;TFAP4:-1.26389691578;HSF1,2:-1.26556533528;TP53:-1.27355240246;IKZF1:-1.31614067289;GLI1..3:-1.33570825397;TFAP2{A,C}:-1.37217123274;FOSL2:-1.37776048818;bHLH_family:-1.39564369373;NFIL3:-1.40558096234;ETS1,2:-1.4349344641;NFE2L1:-1.44338908533;NFE2L2:-1.45167051367;BACH2:-1.45767294356;NFE2:-1.50437100209;AR:-1.52713996433;ESR1:-1.75757665916;ELF1,2,4:-1.78347302595;TBX4,5:-1.78841498005;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86776078309;HLF:-1.88112136177;NR5A1,2:-2.00106477961;TFCP2:-2.01336366179;RXR{A,B,G}:-2.05577686918;NKX2-2,8:-2.06811424432;ATF6:-2.07698155457;ZNF148:-2.11555643972;SRF:-2.11909144754;EN1,2:-2.15623899037;RXRA_VDR{dimer}:-2.17561240839;ESRRA:-2.3760359239;HES1:-2.50838929296 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10072-101I9;search_select_hide=table117:FF:10072-101I9 | |||
}} | }} | ||
Latest revision as of 12:19, 3 June 2020
| Name: | parietal lobe, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11782 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11782
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11782
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0913 |
| 10 | 10 | 0.138 |
| 100 | 100 | 0.608 |
| 101 | 101 | 0.62 |
| 102 | 102 | 0.857 |
| 103 | 103 | 0.0509 |
| 104 | 104 | 0.0913 |
| 105 | 105 | 0.144 |
| 106 | 106 | 0.0295 |
| 107 | 107 | 0.0954 |
| 108 | 108 | 0.868 |
| 109 | 109 | 4.41781e-4 |
| 11 | 11 | 0.0397 |
| 110 | 110 | 0.17 |
| 111 | 111 | 0.388 |
| 112 | 112 | 0.249 |
| 113 | 113 | 0.329 |
| 114 | 114 | 0.075 |
| 115 | 115 | 0.947 |
| 116 | 116 | 0.239 |
| 117 | 117 | 0.0322 |
| 118 | 118 | 0.268 |
| 119 | 119 | 0.35 |
| 12 | 12 | 0.506 |
| 120 | 120 | 0.282 |
| 121 | 121 | 0.333 |
| 122 | 122 | 0.496 |
| 123 | 123 | 0.0991 |
| 124 | 124 | 0.317 |
| 125 | 125 | 0.46 |
| 126 | 126 | 0.0193 |
| 127 | 127 | 0.179 |
| 128 | 128 | 0.18 |
| 129 | 129 | 0.348 |
| 13 | 13 | 0.00632 |
| 130 | 130 | 0.0511 |
| 131 | 131 | 0.646 |
| 132 | 132 | 0.771 |
| 133 | 133 | 0.298 |
| 134 | 134 | 0.808 |
| 135 | 135 | 0.699 |
| 136 | 136 | 0.00528 |
| 137 | 137 | 0.266 |
| 138 | 138 | 0.866 |
| 139 | 139 | 0.0711 |
| 14 | 14 | 0.68 |
| 140 | 140 | 0.405 |
| 141 | 141 | 0.57 |
| 142 | 142 | 0.802 |
| 143 | 143 | 0.0124 |
| 144 | 144 | 0.846 |
| 145 | 145 | 0.368 |
| 146 | 146 | 0.392 |
| 147 | 147 | 0.7 |
| 148 | 148 | 0.026 |
| 149 | 149 | 0.124 |
| 15 | 15 | 0.113 |
| 150 | 150 | 0.249 |
| 151 | 151 | 0.39 |
| 152 | 152 | 0.0346 |
| 153 | 153 | 0.813 |
| 154 | 154 | 0.538 |
| 155 | 155 | 0.783 |
| 156 | 156 | 0.43 |
| 157 | 157 | 0.444 |
| 158 | 158 | 0.381 |
| 159 | 159 | 0.105 |
| 16 | 16 | 0.0323 |
| 160 | 160 | 0.241 |
| 161 | 161 | 0.208 |
| 162 | 162 | 0.445 |
| 163 | 163 | 0.583 |
| 164 | 164 | 0.116 |
| 165 | 165 | 0.219 |
| 166 | 166 | 0.813 |
| 167 | 167 | 0.995 |
| 168 | 168 | 0.0885 |
| 169 | 169 | 0.0105 |
| 17 | 17 | 0.096 |
| 18 | 18 | 0.167 |
| 19 | 19 | 0.121 |
| 2 | 2 | 0.471 |
| 20 | 20 | 0.534 |
| 21 | 21 | 0.231 |
| 22 | 22 | 0.0793 |
| 23 | 23 | 0.204 |
| 24 | 24 | 0.0139 |
| 25 | 25 | 0.411 |
| 26 | 26 | 0.0263 |
| 27 | 27 | 0.412 |
| 28 | 28 | 0.747 |
| 29 | 29 | 0.0645 |
| 3 | 3 | 0.0804 |
| 30 | 30 | 0.58 |
| 31 | 31 | 0.578 |
| 32 | 32 | 0.0428 |
| 33 | 33 | 0.144 |
| 34 | 34 | 0.472 |
| 35 | 35 | 0.619 |
| 36 | 36 | 0.219 |
| 37 | 37 | 0.0164 |
| 38 | 38 | 0.239 |
| 39 | 39 | 0.249 |
| 4 | 4 | 0.93 |
| 40 | 40 | 0.0395 |
| 41 | 41 | 0.235 |
| 42 | 42 | 0.236 |
| 43 | 43 | 0.121 |
| 44 | 44 | 0.211 |
| 45 | 45 | 0.478 |
| 46 | 46 | 0.245 |
| 47 | 47 | 0.101 |
| 48 | 48 | 0.108 |
| 49 | 49 | 0.219 |
| 5 | 5 | 0.317 |
| 50 | 50 | 0.318 |
| 51 | 51 | 0.325 |
| 52 | 52 | 0.32 |
| 53 | 53 | 0.963 |
| 54 | 54 | 0.255 |
| 55 | 55 | 0.934 |
| 56 | 56 | 0.4 |
| 57 | 57 | 0.675 |
| 58 | 58 | 0.274 |
| 59 | 59 | 0.0245 |
| 6 | 6 | 0.929 |
| 60 | 60 | 0.0583 |
| 61 | 61 | 0.0559 |
| 62 | 62 | 0.189 |
| 63 | 63 | 0.144 |
| 64 | 64 | 0.472 |
| 65 | 65 | 0.172 |
| 66 | 66 | 0.292 |
| 67 | 67 | 0.73 |
| 68 | 68 | 0.0994 |
| 69 | 69 | 0.747 |
| 7 | 7 | 0.0709 |
| 70 | 70 | 0.0367 |
| 71 | 71 | 0.0273 |
| 72 | 72 | 0.157 |
| 73 | 73 | 0.0124 |
| 74 | 74 | 0.902 |
| 75 | 75 | 0.0565 |
| 76 | 76 | 0.593 |
| 77 | 77 | 0.082 |
| 78 | 78 | 0.0179 |
| 79 | 79 | 0.443 |
| 8 | 8 | 0.12 |
| 80 | 80 | 0.115 |
| 81 | 81 | 0.601 |
| 82 | 82 | 0.359 |
| 83 | 83 | 0.00917 |
| 84 | 84 | 0.902 |
| 85 | 85 | 0.0869 |
| 86 | 86 | 0.255 |
| 87 | 87 | 2.05066e-4 |
| 88 | 88 | 0.769 |
| 89 | 89 | 0.15 |
| 9 | 9 | 0.252 |
| 90 | 90 | 0.394 |
| 91 | 91 | 0.924 |
| 92 | 92 | 0.299 |
| 93 | 93 | 0.481 |
| 94 | 94 | 0.148 |
| 95 | 95 | 0.00719 |
| 96 | 96 | 0.345 |
| 97 | 97 | 0.76 |
| 98 | 98 | 0.268 |
| 99 | 99 | 0.562 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11782
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0001872 (parietal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010072 (human parietal lobe - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
