FF:10072-101I9: Difference between revisions

Latest revision as of 12:19, 3 June 2020

Name:	parietal lobe, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11782
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	parietal lobe
dev stage	20 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A601609
catalog number	Cat:RtHFN: Brain parietal lobe
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004742

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11782		CAGE		DRX008703		DRR009575

Accession ID Hg19

Library id		BAM		CTSS
CNhs11782		DRZ001000		DRZ002385

Accession ID Hg38

Library id		BAM		CTSS
CNhs11782		DRZ012350		DRZ013735

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.989
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0428
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.125
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.189
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.321
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.189
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.189
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.189
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.161
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.467
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.143
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	1.035
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0209
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.387
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.321
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.321
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.321
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.964
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0126
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.993
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.811
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.349
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.189
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.504
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11782

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00237
MA0003.1	MA0003.1	0.162
MA0004.1	MA0004.1	0.419
MA0006.1	MA0006.1	0.215
MA0007.1	MA0007.1	0.139
MA0009.1	MA0009.1	0.447
MA0014.1	MA0014.1	0.577
MA0017.1	MA0017.1	0.00137
MA0018.2	MA0018.2	0.249
MA0019.1	MA0019.1	0.147
MA0024.1	MA0024.1	0.0576
MA0025.1	MA0025.1	0.0465
MA0027.1	MA0027.1	0.498
MA0028.1	MA0028.1	0.357
MA0029.1	MA0029.1	0.116
MA0030.1	MA0030.1	0.373
MA0031.1	MA0031.1	0.0338
MA0035.2	MA0035.2	0.0119
MA0038.1	MA0038.1	0.208
MA0039.2	MA0039.2	0.0897
MA0040.1	MA0040.1	0.539
MA0041.1	MA0041.1	0.367
MA0042.1	MA0042.1	0.53
MA0043.1	MA0043.1	0.639
MA0046.1	MA0046.1	0.0219
MA0047.2	MA0047.2	0.002
MA0048.1	MA0048.1	0.678
MA0050.1	MA0050.1	1.22575e-4
MA0051.1	MA0051.1	0.00661
MA0052.1	MA0052.1	0.17
MA0055.1	MA0055.1	0.0817
MA0057.1	MA0057.1	0.251
MA0058.1	MA0058.1	0.268
MA0059.1	MA0059.1	0.204
MA0060.1	MA0060.1	0.178
MA0061.1	MA0061.1	0.0177
MA0062.2	MA0062.2	0.0443
MA0065.2	MA0065.2	2.54589e-4
MA0066.1	MA0066.1	0.0156
MA0067.1	MA0067.1	0.789
MA0068.1	MA0068.1	0.485
MA0069.1	MA0069.1	0.432
MA0070.1	MA0070.1	0.485
MA0071.1	MA0071.1	0.0362
MA0072.1	MA0072.1	0.249
MA0073.1	MA0073.1	0.27
MA0074.1	MA0074.1	0.158
MA0076.1	MA0076.1	0.614
MA0077.1	MA0077.1	0.262
MA0078.1	MA0078.1	0.732
MA0079.2	MA0079.2	0.694
MA0080.2	MA0080.2	2.56919e-11
MA0081.1	MA0081.1	0.0512
MA0083.1	MA0083.1	0.00672
MA0084.1	MA0084.1	0.672
MA0087.1	MA0087.1	0.237
MA0088.1	MA0088.1	0.235
MA0090.1	MA0090.1	0.194
MA0091.1	MA0091.1	0.231
MA0092.1	MA0092.1	0.299
MA0093.1	MA0093.1	0.416
MA0099.2	MA0099.2	5.73612e-23
MA0100.1	MA0100.1	0.938
MA0101.1	MA0101.1	0.00833
MA0102.2	MA0102.2	0.00925
MA0103.1	MA0103.1	0.171
MA0104.2	MA0104.2	0.743
MA0105.1	MA0105.1	0.0173
MA0106.1	MA0106.1	0.0667
MA0107.1	MA0107.1	0.0081
MA0108.2	MA0108.2	0.224
MA0111.1	MA0111.1	0.819
MA0112.2	MA0112.2	1.53311e-4
MA0113.1	MA0113.1	0.0363
MA0114.1	MA0114.1	0.00491
MA0115.1	MA0115.1	0.463
MA0116.1	MA0116.1	0.0231
MA0117.1	MA0117.1	0.806
MA0119.1	MA0119.1	0.174
MA0122.1	MA0122.1	0.27
MA0124.1	MA0124.1	0.709
MA0125.1	MA0125.1	0.296
MA0131.1	MA0131.1	0.617
MA0135.1	MA0135.1	0.652
MA0136.1	MA0136.1	1.04131e-13
MA0137.2	MA0137.2	0.124
MA0138.2	MA0138.2	0.706
MA0139.1	MA0139.1	0.268
MA0140.1	MA0140.1	0.00119
MA0141.1	MA0141.1	0.0022
MA0142.1	MA0142.1	0.569
MA0143.1	MA0143.1	0.466
MA0144.1	MA0144.1	0.0617
MA0145.1	MA0145.1	0.0861
MA0146.1	MA0146.1	0.0145
MA0147.1	MA0147.1	0.633
MA0148.1	MA0148.1	0.0162
MA0149.1	MA0149.1	0.0144
MA0150.1	MA0150.1	1.42916e-5
MA0152.1	MA0152.1	0.298
MA0153.1	MA0153.1	0.317
MA0154.1	MA0154.1	0.0264
MA0155.1	MA0155.1	0.437
MA0156.1	MA0156.1	7.73699e-8
MA0157.1	MA0157.1	0.0338
MA0159.1	MA0159.1	0.00214
MA0160.1	MA0160.1	0.00402
MA0162.1	MA0162.1	0.217
MA0163.1	MA0163.1	5.67103e-4
MA0164.1	MA0164.1	0.892
MA0258.1	MA0258.1	0.00559
MA0259.1	MA0259.1	0.832

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11782

Novel motif	Logo	P-value
1	1	0.0913
10	10	0.138
100	100	0.608
101	101	0.62
102	102	0.857
103	103	0.0509
104	104	0.0913
105	105	0.144
106	106	0.0295
107	107	0.0954
108	108	0.868
109	109	4.41781e-4
11	11	0.0397
110	110	0.17
111	111	0.388
112	112	0.249
113	113	0.329
114	114	0.075
115	115	0.947
116	116	0.239
117	117	0.0322
118	118	0.268
119	119	0.35
12	12	0.506
120	120	0.282
121	121	0.333
122	122	0.496
123	123	0.0991
124	124	0.317
125	125	0.46
126	126	0.0193
127	127	0.179
128	128	0.18
129	129	0.348
13	13	0.00632
130	130	0.0511
131	131	0.646
132	132	0.771
133	133	0.298
134	134	0.808
135	135	0.699
136	136	0.00528
137	137	0.266
138	138	0.866
139	139	0.0711
14	14	0.68
140	140	0.405
141	141	0.57
142	142	0.802
143	143	0.0124
144	144	0.846
145	145	0.368
146	146	0.392
147	147	0.7
148	148	0.026
149	149	0.124
15	15	0.113
150	150	0.249
151	151	0.39
152	152	0.0346
153	153	0.813
154	154	0.538
155	155	0.783
156	156	0.43
157	157	0.444
158	158	0.381
159	159	0.105
16	16	0.0323
160	160	0.241
161	161	0.208
162	162	0.445
163	163	0.583
164	164	0.116
165	165	0.219
166	166	0.813
167	167	0.995
168	168	0.0885
169	169	0.0105
17	17	0.096
18	18	0.167
19	19	0.121
2	2	0.471
20	20	0.534
21	21	0.231
22	22	0.0793
23	23	0.204
24	24	0.0139
25	25	0.411
26	26	0.0263
27	27	0.412
28	28	0.747
29	29	0.0645
3	3	0.0804
30	30	0.58
31	31	0.578
32	32	0.0428
33	33	0.144
34	34	0.472
35	35	0.619
36	36	0.219
37	37	0.0164
38	38	0.239
39	39	0.249
4	4	0.93
40	40	0.0395
41	41	0.235
42	42	0.236
43	43	0.121
44	44	0.211
45	45	0.478
46	46	0.245
47	47	0.101
48	48	0.108
49	49	0.219
5	5	0.317
50	50	0.318
51	51	0.325
52	52	0.32
53	53	0.963
54	54	0.255
55	55	0.934
56	56	0.4
57	57	0.675
58	58	0.274
59	59	0.0245
6	6	0.929
60	60	0.0583
61	61	0.0559
62	62	0.189
63	63	0.144
64	64	0.472
65	65	0.172
66	66	0.292
67	67	0.73
68	68	0.0994
69	69	0.747
7	7	0.0709
70	70	0.0367
71	71	0.0273
72	72	0.157
73	73	0.0124
74	74	0.902
75	75	0.0565
76	76	0.593
77	77	0.082
78	78	0.0179
79	79	0.443
8	8	0.12
80	80	0.115
81	81	0.601
82	82	0.359
83	83	0.00917
84	84	0.902
85	85	0.0869
86	86	0.255
87	87	2.05066e-4
88	88	0.769
89	89	0.15
9	9	0.252
90	90	0.394
91	91	0.924
92	92	0.299
93	93	0.481
94	94	0.148
95	95	0.00719
96	96	0.345
97	97	0.76
98	98	0.268
99	99	0.562

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11782

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010072 human parietal lobe - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0001872 (parietal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010072 (human parietal lobe - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008594
+|DRA_sample_Accession=CAGE@SAMD00004742
-|accession_numbers=CAGE;DRX008703;DRR009575;DRZ001000;DRZ002385
+|accession_numbers=CAGE;DRX008703;DRR009575;DRZ001000;DRZ002385;DRZ012350;DRZ013735
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001872,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:25034067..25034088,-!p1@ARX!2.64!439.77!ARX;;chr7:31380292..31380351,-!p1@NEUROD6!2.52!327.64!NEUROD6;;chr14:29235961..29236008,+!p1@FOXG1!2.46!284.97!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.44!274.03!SOX11;;chr17:37764128..37764258,-!p1@NEUROD2!2.41!257.08!NEUROD2;;chr2:2334997..2335053,-!p1@MYT1L!2.39!245.59!MYT1L;;chr1:244214577..244214593,+!p1@ZNF238!2.28!188.16!ZNF238;;chr2:200322229..200322251,-!p3@SATB2!2.25!178.86!SATB2;;chr5:88178983..88179012,-!p1@MEF2C!2.18!1097.23!MEF2C;;chr4:81118647..81118666,+!p1@PRDM8!2.17!190.89!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.16!143.31!POU3F3;;chr14:29234581..29234601,+!p2@FOXG1!2.13!135.10!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.13!133.46!TBR1;;chr9:77112244..77112262,+!p1@RORB!2.11!142.76!RORB;;chr2:172967621..172967637,-!p1@DLX2!2.03!270.21!DLX2;;chr21:34442439..34442455,+!p1@OLIG1!2.02!102.83!OLIG1;;chr8:93107451..93107468,-!p2@RUNX1T1!1.98!93.53!RUNX1T1;;chr19:13135582..13135600,+!p3@NFIX!1.96!89.70!NFIX;;chr12:103351444..103351461,+!p1@ASCL1!1.95!88.61!ASCL1;;chr2:5832493..5832507,+!p2@SOX11!1.94!86.97!SOX11;;chr2:200322723..200322739,-!p6@SATB2!1.93!84.78!SATB2;;chr9:126773880..126773895,+!p2@LHX2!1.93!83.69!LHX2;;chr1:2461692..2461710,-!p1@HES5!1.90!78.76!HES5;;chr2:2335109..2335134,-!p2@MYT1L!1.88!74.94!MYT1L;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.39!SOX2;;chr7:96654133..96654150,-!p1@DLX5!1.86!71.65!DLX5;;chr2:145277882..145277967,-!p3@ZEB2!1.83!112.68!ZEB2;;chr12:24102576..24102623,-!p2@SOX5!1.81!64.00!SOX5;;chr2:166428839..166428859,+!p2@CSRNP3!1.81!63.45!CSRNP3;;chr13:72441315..72441454,-!p1@DACH1!1.80!121.98!DACH1;;chrX:82763292..82763317,+!p1@POU3F4!1.80!62.36!POU3F4;;chr9:14314131..14314147,-!p2@NFIB!1.79!318.89!NFIB;;chr2:162272889..162272915,+!p2@TBR1!1.77!58.53!TBR1;;chr1:151032922..151032951,+!p2@MLLT11!1.75!89.70!MLLT11;;chr20:20348740..20348757,+!p1@INSM1!1.74!54.15!INSM1;;chr2:200322259..200322280,-!p5@SATB2!1.71!50.87!SATB2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.71!50.32!RUNX1T1;;chr2:60780607..60780624,-!p2@BCL11A!1.70!146.04!BCL11A;;chr1:214161272..214161322,+!p1@PROX1!1.69!66.73!PROX1;;chr8:65492756..65492768,+!p2@BHLHE22!1.69!48.13!BHLHE22;;chr14:33403881..33403924,+!p1@NPAS3!1.69!47.59!NPAS3;;chr2:172949484..172949522,+!p1@DLX1!1.69!47.59!DLX1;;chr2:239148671..239148686,-!p1@HES6!1.68!166.28!HES6;;chr2:60781201..60781258,-!p3@BCL11A!1.68!47.04!BCL11A;;chr19:38720294..38720348,-!p1@DPF1!1.67!56.89!DPF1;;chr2:200320768..200320800,-!p4@SATB2!1.67!45.40!SATB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.66!64.00!CSRNP3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.66!44.85!POU3F3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.66!44.85!PEG3;;chr21:34398234..34398250,+!p1@OLIG2!1.66!44.85!OLIG2;;chr18:53070846..53070902,-!p6@TCF4!1.66!44.85!TCF4;;chr5:88179017..88179046,-!p2@MEF2C!1.64!165.19!MEF2C;;chr2:175199675..175199688,+!p1@SP9!1.64!42.66!SP9;;chr9:126774018..126774055,+!p1@LHX2!1.64!42.66!LHX2;;chrX:84498989..84499003,+!p1@ZNF711!1.62!55.24!ZNF711;;chr2:16080659..16080685,+!p1@MYCN!1.62!41.02!MYCN;;chr2:60780753..60780800,-!p1@BCL11A!1.61!188.16!BCL11A;;chr14:29236269..29236285,+!p3@FOXG1!1.61!39.93!FOXG1;;chr8:93115274..93115323,-!p4@RUNX1T1!1.61!39.38!RUNX1T1;;chr1:244219775..244219893,+!p2@ZNF238!1.60!51.96!ZNF238;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!38.84!ZBED1;;chr5:88179195..88179224,-!p3@MEF2C!1.58!58.53!MEF2C;;chr5:88179271..88179286,-!p7@MEF2C!1.58!37.19!MEF2C;;chr2:172950227..172950249,+!p2@DLX1!1.57!36.10!DLX1;;chr1:61548374..61548415,+!p4@NFIA!1.56!65.09!NFIA;;chr2:200325204..200325243,-!p7@SATB2!1.56!35.01!SATB2;;chr6:21593973..21593988,+!p1@SOX4!1.55!1169.98!SOX4;;chr9:20621927..20621996,-!p3@MLLT3!1.55!57.43!MLLT3;;chr2:200322654..200322707,-!p2@SATB2!1.55!49.77!SATB2;;chr1:244214611..244214624,+!p4@ZNF238!1.55!34.46!ZNF238;;chr18:53257027..53257052,-!p3@TCF4!1.53!127.45!TCF4;;chr19:13134772..13134822,+!p2@NFIX!1.53!48.13!NFIX;;chr18:53254566..53254567,-!p8@TCF4!1.52!51.96!TCF4;;chr2:145277640..145277771,-!p1@ZEB2!1.50!388.35!ZEB2;;chr5:88179230..88179270,-!p4@MEF2C!1.50!59.07!MEF2C;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.19!SOX5;;chr2:200213794..200213807,-!p9@SATB2!1.47!28.44!SATB2;;chr4:113437332..113437337,-!p1@NEUROG2!1.46!27.90!NEUROG2;;chr9:14314106..14314119,-!p5@NFIB!1.45!48.13!NFIB;;chr1:197886461..197886558,+!p1@LHX9!1.45!27.35!LHX9;;chr2:60780580..60780590,-!p9@BCL11A!1.45!27.35!BCL11A;;chr3:114173720..114173794,-!p6@ZBTB20!1.45!27.35!ZBTB20;;chr3:181429741..181429767,+!p2@SOX2!1.45!27.35!SOX2;;chrX:84499081..84499115,+!p2@ZNF711!1.44!38.84!ZNF711;;chr9:124991204..124991246,-!p1@LHX6!1.44!26.80!LHX6;;chr2:162272716..162272753,+!p3@TBR1!1.44!26.25!TBR1;;chr5:124082322..124082364,-!p1@ZNF608!1.43!65.09!ZNF608;;chr7:113726357..113726443,+!p1@FOXP2!1.43!44.30!FOXP2;;chr18:53068911..53068935,-!p4@TCF4!1.43!28.99!TCF4;;chr7:100065686..100065701,-!p2@TSC22D4!1.43!25.71!TSC22D4;;chr2:2335070..2335098,-!p4@MYT1L!1.42!25.16!MYT1L;;chr9:20621834..20621884,-!p5@MLLT3!1.42!25.16!MLLT3;;chr15:37392094..37392116,-!p6@MEIS2!1.41!30.63!MEIS2;;chr1:165414325..165414369,-!p1@RXRG!1.41!24.61!RXRG;;chr1:164528616..164528660,+!p5@PBX1!1.40!48.13!PBX1;;chr15:80696703..80696754,+!p1@ARNT2!1.40!32.27!ARNT2;;chr13:72441074..72441172,-!p2@DACH1!1.40!24.07!DACH1;;chr14:29236301..29236317,+!p5@FOXG1!1.39!23.52!FOXG1;;chr15:37392724..37392757,-!p1@MEIS2!1.38!102.28!MEIS2;;chr6:21597600..21597664,+!p3@SOX4!1.38!37.74!SOX4;;chr7:96634878..96634900,+!p2@DLX6!1.38!22.97!DLX6;;chr18:53070913..53070933,-!p16@TCF4!1.37!22.43!TCF4;;chr2:145275982..145276003,-!p7@ZEB2!1.37!22.43!ZEB2;;chr1:151032860..151032918,+!p1@MLLT11!1.36!248.87!MLLT11;;chr9:14313893..14313908,-!p7@NFIB!1.36!31.18!NFIB;;chr11:8102846..8102892,+!p1@TUB!1.36!30.63!TUB;;chr6:21594252..21594285,+!p11@SOX4!1.36!24.61!SOX4;;chr5:92919375..92919438,+!p6@NR2F1!1.36!23.52!NR2F1;;chr14:29236169..29236216,+!p6@FOXG1!1.36!21.88!FOXG1;;chr2:200322711..200322722,-!p10@SATB2!1.36!21.88!SATB2;;chr9:3525867..3525902,-!p3@RFX3!1.35!72.75!RFX3;;chr19:13135566..13135577,+!p9@NFIX!1.35!21.33!NFIX;;chr12:111471526..111471541,+!p1@CUX2!1.35!21.33!CUX2;;chr9:109625401..109625458,+!p1@ZNF462!1.33!52.51!ZNF462;;chr6:91006518..91006570,-!p1@BACH2!1.33!45.95!BACH2;;chr12:24103844..24103880,-!p3@SOX5!1.33!20.24!SOX5;;chr3:114819101..114819121,-!p7@ZBTB20!1.33!20.24!ZBTB20;;chr15:37392616..37392638,-!p2@MEIS2!1.32!60.71!MEIS2;;chr19:13135731..13135787,+!p10@NFIX!1.32!19.69!NFIX;;chr11:16629369..16629392,-!p5@SOX6!1.32!19.69!SOX6;;chr3:27764190..27764208,-!p2@EOMES!1.32!19.69!EOMES;;chr19:58220517..58220583,-!p1@ZNF154!1.30!59.62!ZNF154;;chr2:60780546..60780555,-!p10@BCL11A!1.30!19.14!BCL11A;;chr3:141105235..141105307,+!p7@ZBTB38!1.30!19.14!ZBTB38;;chr14:58798013..58798071,+!p2@ARID4A!1.30!19.14!ARID4A;;chr9:3525910..3525955,-!p4@RFX3!1.29!54.70!RFX3;;chr2:200323414..200323455,-!p1@SATB2!1.29!38.84!SATB2;;chr15:37390850..37390909,-!p3@MEIS2!1.29!35.55!MEIS2;;chr6:21597514..21597578,+!p4@SOX4!1.29!31.18!SOX4;;chr1:164528410..164528428,+!p1@PBX1!1.28!132.37!PBX1;;chr18:53257001..53257015,-!p5@TCF4!1.28!30.63!TCF4;;chr20:657284..657307,-!p1@SCRT2!1.28!18.05!SCRT2;;chr8:93115332..93115360,-!p11@RUNX1T1!1.28!18.05!RUNX1T1;;chrX:84499056..84499078,+!p3@ZNF711!1.28!18.05!ZNF711;;chr8:77593474..77593612,+!p1@ZFHX4!1.27!73.84!ZFHX4;;chr1:61548069..61548102,+!p3@NFIA!1.27!42.12!NFIA;;chr10:118897911..118897974,-!p1@VAX1!1.27!17.50!VAX1;;chr9:14308004..14308041,-!p14@NFIB!1.27!17.50!NFIB;;chr5:92919100..92919135,+!p3@NR2F1!1.26!20.79!NR2F1;;chr1:8877692..8877732,-!p1@RERE!1.25!131.82!RERE;;chr2:185463247..185463263,+!p1@ZNF804A!1.25!29.54!ZNF804A;;chr18:42260059..42260132,+!p1@SETBP1!1.25!27.90!SETBP1;;chr6:91006575..91006602,-!p2@BACH2!1.25!24.61!BACH2;;chr11:31832862..31832884,-!p2@PAX6!1.25!16.96!PAX6;;chrX:101186981..101187030,-!p1@ZMAT1!1.24!53.06!ZMAT1;;chr9:14314066..14314075,-!p11@NFIB!1.24!16.41!NFIB;;chr1:42384343..42384380,-!p4@HIVEP3!1.24!16.41!HIVEP3;;chr14:21994337..21994442,-!p1@SALL2!1.23!43.21!SALL2;;chr1:38512457..38512474,-!p1@POU3F1!1.23!17.50!POU3F1;;chr9:126774058..126774081,+!p3@LHX2!1.23!15.86!LHX2;;chr14:33403648..33403710,+!p3@NPAS3!1.23!15.86!NPAS3;;chr6:99282438..99282457,+!p2@POU3F2!1.23!15.86!POU3F2;;chr7:86781858..86781879,+!p3@DMTF1!1.21!24.61!DMTF1;;chr7:96634908..96634923,+!p4@DLX6!1.21!15.32!DLX6;;chr8:30890810..30890880,-!p1@PURG!1.21!15.32!PURG;;chr18:52988979..52988993,-!p18@TCF4!1.21!15.32!TCF4;;chr11:125034640..125034655,+!p1@PKNOX2!1.21!15.32!PKNOX2;;chr13:100634031..100634045,+!p1@ZIC2!1.21!15.32!ZIC2;;chr14:29234870..29234930,+!p7@FOXG1!1.21!15.32!FOXG1;;chr12:106976678..106976708,+!p2@RFX4!1.20!14.77!RFX4;;chr14:29237009..29237049,+!p4@FOXG1!1.20!14.77!FOXG1;;chr8:65492915..65492932,+!p1@BHLHE22!1.20!14.77!BHLHE22;;chr2:2328725..2328739,-!p5@MYT1L!1.20!14.77!MYT1L;;chr2:60780516..60780526,-!p11@BCL11A!1.20!14.77!BCL11A;;chr19:47523058..47523114,+!p1@NPAS1!1.20!14.77!NPAS1;;chr18:52988952..52988965,-!p23@TCF4!1.20!14.77!TCF4;;chr8:106330656..106330684,+!p1@ZFPM2!1.19!37.74!ZFPM2;;chr15:37392576..37392589,-!p12@MEIS2!1.19!17.50!MEIS2;;chr1:164528687..164528711,+!p6@PBX1!1.18!16.41!PBX1;;chr5:92918768..92918783,+!p8@NR2F1!1.18!14.22!NR2F1;;chr8:93115362..93115391,-!p9@RUNX1T1!1.18!14.22!RUNX1T1;;chr2:60780730..60780742,-!p5@BCL11A!1.18!14.22!BCL11A;;chr18:53256971..53256984,-!p26@TCF4!1.18!14.22!TCF4;;chr9:20622444..20622468,-!p2@MLLT3!1.17!44.85!MLLT3;;chr8:93107855..93107901,-!p12@RUNX1T1!1.17!13.67!RUNX1T1;;chr11:16629288..16629315,-!p8@SOX6!1.17!13.67!SOX6;;chr2:200322213..200322224,-!p14@SATB2!1.17!13.67!SATB2;;chr5:178368186..178368238,+!p1@ZNF454!1.15!23.52!ZNF454;;chr8:93074803..93074845,-!p1@RUNX1T1!1.15!13.13!RUNX1T1;;chr2:166428861..166428883,+!p3@CSRNP3!1.15!13.13!CSRNP3;;chr2:45168875..45168916,+!p1@SIX3!1.15!13.13!SIX3;;chr3:21792682..21792720,-!p1@ZNF385D!1.15!13.13!ZNF385D;;chr18:42260840..42260860,+!p2@SETBP1!1.15!13.13!SETBP1;;chr18:56532100..56532130,+!p1@ZNF53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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001872;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11782.10072-101I9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10072-101I9
 |is_a=EFO:0002091;;FF:0010072
 |is_obsolete=
 |library_id=CNhs11782
+|library_id_phase_based=2:CNhs11782
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10072
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10072
 |name=parietal lobe, fetal, donor1
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11782,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10072-101I9;search_select_hide=table117:FF:10072-101I9
 }}

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FF:10072-101I9: Difference between revisions

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Latest revision as of 12:19, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0