FF:10156-103A3: Difference between revisions

Latest revision as of 12:23, 3 June 2020

Name:	medial temporal gyrus, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12316
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	medial temporal gyrus
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005202

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12316		CAGE		DRX008685		DRR009557

Accession ID Hg19

Library id		BAM		CTSS
CNhs12316		DRZ000982		DRZ002367

Accession ID Hg38

Library id		BAM		CTSS
CNhs12316		DRZ012332		DRZ013717

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.377
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	1.062
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.287
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.106
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.111
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.576
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0562
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.175
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0562
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.151
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.262
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.106
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0471
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.236
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.936
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0562
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0562
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0424
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.101
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0213
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.096
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.731
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.214
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.377
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.106
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.591
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.00467
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.591
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0562
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.635
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.106
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.364
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.534
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.522
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0562
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.635
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.142
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0562
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.0811
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.228
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0562
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.675
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.745
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.128
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.507
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0562
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.7
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0562
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12316

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0456
MA0003.1	MA0003.1	0.24
MA0004.1	MA0004.1	0.384
MA0006.1	MA0006.1	0.253
MA0007.1	MA0007.1	0.322
MA0009.1	MA0009.1	0.196
MA0014.1	MA0014.1	0.639
MA0017.1	MA0017.1	4.89648e-4
MA0018.2	MA0018.2	0.512
MA0019.1	MA0019.1	0.593
MA0024.1	MA0024.1	0.92
MA0025.1	MA0025.1	0.517
MA0027.1	MA0027.1	0.545
MA0028.1	MA0028.1	0.0565
MA0029.1	MA0029.1	0.0371
MA0030.1	MA0030.1	0.605
MA0031.1	MA0031.1	0.999
MA0035.2	MA0035.2	0.00737
MA0038.1	MA0038.1	0.45
MA0039.2	MA0039.2	0.139
MA0040.1	MA0040.1	0.657
MA0041.1	MA0041.1	0.398
MA0042.1	MA0042.1	0.93
MA0043.1	MA0043.1	1
MA0046.1	MA0046.1	0.00189
MA0047.2	MA0047.2	0.0598
MA0048.1	MA0048.1	0.149
MA0050.1	MA0050.1	0.0322
MA0051.1	MA0051.1	0.0785
MA0052.1	MA0052.1	0.522
MA0055.1	MA0055.1	0.00122
MA0057.1	MA0057.1	0.851
MA0058.1	MA0058.1	0.311
MA0059.1	MA0059.1	0.0733
MA0060.1	MA0060.1	0.736
MA0061.1	MA0061.1	0.00699
MA0062.2	MA0062.2	0.00307
MA0065.2	MA0065.2	1.39873e-4
MA0066.1	MA0066.1	0.00913
MA0067.1	MA0067.1	0.896
MA0068.1	MA0068.1	0.512
MA0069.1	MA0069.1	0.473
MA0070.1	MA0070.1	0.589
MA0071.1	MA0071.1	0.0118
MA0072.1	MA0072.1	0.241
MA0073.1	MA0073.1	0.436
MA0074.1	MA0074.1	0.227
MA0076.1	MA0076.1	0.104
MA0077.1	MA0077.1	0.156
MA0078.1	MA0078.1	0.88
MA0079.2	MA0079.2	0.738
MA0080.2	MA0080.2	7.78161e-8
MA0081.1	MA0081.1	0.0337
MA0083.1	MA0083.1	0.00922
MA0084.1	MA0084.1	0.704
MA0087.1	MA0087.1	0.868
MA0088.1	MA0088.1	0.236
MA0090.1	MA0090.1	0.369
MA0091.1	MA0091.1	0.53
MA0092.1	MA0092.1	0.27
MA0093.1	MA0093.1	0.382
MA0099.2	MA0099.2	2.93582e-20
MA0100.1	MA0100.1	0.539
MA0101.1	MA0101.1	0.00283
MA0102.2	MA0102.2	0.186
MA0103.1	MA0103.1	0.145
MA0104.2	MA0104.2	0.416
MA0105.1	MA0105.1	0.00179
MA0106.1	MA0106.1	0.0472
MA0107.1	MA0107.1	0.00319
MA0108.2	MA0108.2	0.0928
MA0111.1	MA0111.1	0.606
MA0112.2	MA0112.2	0.00104
MA0113.1	MA0113.1	0.534
MA0114.1	MA0114.1	9.63936e-4
MA0115.1	MA0115.1	0.321
MA0116.1	MA0116.1	0.00864
MA0117.1	MA0117.1	0.852
MA0119.1	MA0119.1	0.12
MA0122.1	MA0122.1	0.581
MA0124.1	MA0124.1	0.671
MA0125.1	MA0125.1	0.484
MA0131.1	MA0131.1	0.996
MA0135.1	MA0135.1	0.158
MA0136.1	MA0136.1	7.06887e-12
MA0137.2	MA0137.2	0.86
MA0138.2	MA0138.2	0.467
MA0139.1	MA0139.1	0.424
MA0140.1	MA0140.1	0.00122
MA0141.1	MA0141.1	0.00155
MA0142.1	MA0142.1	0.762
MA0143.1	MA0143.1	0.584
MA0144.1	MA0144.1	0.428
MA0145.1	MA0145.1	0.155
MA0146.1	MA0146.1	0.0144
MA0147.1	MA0147.1	0.309
MA0148.1	MA0148.1	0.0823
MA0149.1	MA0149.1	0.0245
MA0150.1	MA0150.1	2.26098e-4
MA0152.1	MA0152.1	0.478
MA0153.1	MA0153.1	0.084
MA0154.1	MA0154.1	0.0501
MA0155.1	MA0155.1	0.48
MA0156.1	MA0156.1	4.89123e-8
MA0157.1	MA0157.1	0.658
MA0159.1	MA0159.1	0.00402
MA0160.1	MA0160.1	0.00821
MA0162.1	MA0162.1	0.102
MA0163.1	MA0163.1	2.25812e-5
MA0164.1	MA0164.1	0.767
MA0258.1	MA0258.1	0.00941
MA0259.1	MA0259.1	0.828

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12316

Novel motif	Logo	P-value
1	1	0.0728
10	10	0.0602
100	100	0.366
101	101	0.469
102	102	0.975
103	103	0.139
104	104	0.174
105	105	0.157
106	106	0.0464
107	107	0.0983
108	108	0.955
109	109	0.00154
11	11	0.0126
110	110	0.0516
111	111	0.225
112	112	0.376
113	113	0.497
114	114	0.186
115	115	0.987
116	116	0.125
117	117	0.0123
118	118	0.142
119	119	0.213
12	12	0.479
120	120	0.241
121	121	0.26
122	122	0.837
123	123	0.58
124	124	0.147
125	125	0.192
126	126	0.0238
127	127	0.579
128	128	0.145
129	129	0.564
13	13	0.00113
130	130	0.147
131	131	0.0439
132	132	0.558
133	133	0.0843
134	134	0.583
135	135	0.188
136	136	6.04582e-4
137	137	0.861
138	138	0.983
139	139	0.115
14	14	0.829
140	140	0.702
141	141	0.579
142	142	0.906
143	143	0.107
144	144	0.903
145	145	0.137
146	146	0.541
147	147	0.832
148	148	0.395
149	149	0.243
15	15	0.093
150	150	0.149
151	151	0.657
152	152	0.0747
153	153	0.85
154	154	0.458
155	155	0.947
156	156	0.466
157	157	0.454
158	158	0.137
159	159	0.0153
16	16	0.0414
160	160	0.217
161	161	0.205
162	162	0.66
163	163	0.641
164	164	0.0467
165	165	0.045
166	166	0.898
167	167	0.993
168	168	0.577
169	169	0.0117
17	17	0.119
18	18	0.115
19	19	0.183
2	2	0.808
20	20	0.143
21	21	0.058
22	22	0.192
23	23	0.404
24	24	0.0224
25	25	0.475
26	26	3.8457e-4
27	27	0.74
28	28	0.644
29	29	0.00773
3	3	0.0523
30	30	0.931
31	31	0.861
32	32	0.0245
33	33	0.0488
34	34	0.598
35	35	0.636
36	36	0.194
37	37	0.0323
38	38	0.358
39	39	0.22
4	4	0.802
40	40	0.0272
41	41	0.312
42	42	0.259
43	43	0.13
44	44	0.156
45	45	0.633
46	46	0.0889
47	47	0.0684
48	48	0.0545
49	49	0.252
5	5	0.786
50	50	0.34
51	51	0.426
52	52	0.476
53	53	0.81
54	54	0.391
55	55	0.528
56	56	0.461
57	57	0.363
58	58	0.31
59	59	0.0723
6	6	0.904
60	60	0.0663
61	61	0.0735
62	62	0.187
63	63	0.212
64	64	0.207
65	65	0.256
66	66	0.164
67	67	0.357
68	68	0.21
69	69	0.371
7	7	0.0547
70	70	0.0558
71	71	0.0108
72	72	0.402
73	73	0.0231
74	74	0.941
75	75	0.0404
76	76	0.477
77	77	0.129
78	78	0.00223
79	79	0.394
8	8	0.0641
80	80	0.457
81	81	0.662
82	82	0.593
83	83	0.0485
84	84	0.593
85	85	0.244
86	86	0.221
87	87	5.25242e-5
88	88	0.796
89	89	0.356
9	9	0.337
90	90	0.086
91	91	0.863
92	92	0.532
93	93	0.94
94	94	0.202
95	95	0.00843
96	96	0.794
97	97	0.773
98	98	0.302
99	99	0.546

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12316

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010156 human medial temporal gyrus donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000200 (gyrus)
0002771 (middle temporal gyrus)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010156 (human medial temporal gyrus donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008576
+|DRA_sample_Accession=CAGE@SAMD00005202
+|accession_numbers=CAGE;DRX008685;DRR009557;DRZ000982;DRZ002367;DRZ012332;DRZ013717
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000200,UBERON:0002771,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.46!290.20!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.34!218.72!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.26!181.26!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.17!161.76!RORB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.08!120.01!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.99!196.05!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.93!84.89!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.92!107.15!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.88!85.72!HLF;;chr10:64134120..64134183,+!p1@ZNF365!1.82!78.39!ZNF365;;chr8:53322304..53322340,-!p1@ST18!1.81!64.29!ST18;;chr17:37764128..37764258,-!p1@NEUROD2!1.81!63.46!NEUROD2;;chr9:114287433..114287513,+!p1@ZNF483!1.77!143.79!ZNF483;;chr14:29235961..29236008,+!p1@FOXG1!1.77!57.79!FOXG1;;chr11:113930425..113930471,+!p1@ZBTB16!1.75!78.95!ZBTB16;;chr21:34398234..34398250,+!p1@OLIG2!1.73!53.23!OLIG2;;chr2:95963052..95963106,+!p1@KCNIP3!1.71!50.74!KCNIP3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.70!48.94!SMARCE1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.69!48.11!POU3F3;;chr19:46801639..46801699,+!p1@HIF3A!1.68!46.59!HIF3A;;chr2:145277882..145277967,-!p3@ZEB2!1.66!76.46!ZEB2;;chr2:162272785..162272836,+!p1@TBR1!1.66!44.52!TBR1;;chr15:80733570..80733659,+!p2@ARNT2!1.66!44.24!ARNT2;;chr12:26277817..26277863,-!p2@BHLHE41!1.65!58.90!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.65!OLIG1;;chr16:1031762..1031781,+!p1@SOX8!1.62!40.23!SOX8;;chr19:13135582..13135600,+!p3@NFIX!1.60!38.57!NFIX;;chr2:2334997..2335053,-!p1@MYT1L!1.60!38.57!MYT1L;;chr8:40755333..40755352,-!p1@ZMAT4!1.59!37.88!ZMAT4;;chrX:25034067..25034088,-!p1@ARX!1.58!37.33!ARX;;chr5:88178983..88179012,-!p1@MEF2C!1.57!265.87!MEF2C;;chr10:48355030..48355090,+!p1@ZNF488!1.57!45.76!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.56!35.67!NKX6-2;;chr12:106976678..106976708,+!p2@RFX4!1.56!35.39!RFX4;;chr8:53322347..53322378,-!p2@ST18!1.56!35.26!ST18;;chr2:166326200..166326216,+!p1@CSRNP3!1.53!47.01!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.53!33.18!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!1.53!32.63!NFIX;;chr10:119302232..119302265,+!p1@EMX2!1.51!31.52!EMX2;;chr12:54779511..54779577,-!p5@ZNF385A!1.51!31.52!ZNF385A;;chr22:41763452..41763466,+!p2@TEF!1.50!30.56!TEF;;chr3:181429741..181429767,+!p2@SOX2!1.49!29.86!SOX2;;chr11:31832862..31832884,-!p2@PAX6!1.49!29.86!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.48!101.21!BHLHE41;;chr4:57547454..57547469,-!p1@HOPX!1.48!29.17!HOPX;;chr15:80696703..80696754,+!p1@ARNT2!1.46!37.05!ARNT2;;chr5:92920256..92920282,+!p7@NR2F1!1.46!33.46!NR2F1;;chr2:60781201..60781258,-!p3@BCL11A!1.44!26.82!BCL11A;;chr15:31658288..31658338,+!p4@KLF13!1.43!26.13!KLF13;;chr18:53070846..53070902,-!p6@TCF4!1.42!25.44!TCF4;;chr8:145560111..145560165,-!p2@SCRT1!1.41!24.61!SCRT1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.78!LHX2;;chr7:31380292..31380351,-!p1@NEUROD6!1.39!23.64!NEUROD6;;chr11:8102846..8102892,+!p1@TUB!1.38!31.80!TUB;;chr3:126076242..126076257,-!p1@KLF15!1.38!28.76!KLF15;;chr14:29236269..29236285,+!p3@FOXG1!1.38!22.81!FOXG1;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.32!SOX15;;chr14:33403881..33403924,+!p1@NPAS3!1.37!22.26!NPAS3;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.83!PROX1;;chr14:29234581..29234601,+!p2@FOXG1!1.35!21.15!FOXG1;;chr12:106976774..106976788,+!p1@RFX4!1.34!20.74!RFX4;;chr16:85932760..85932775,+!p1@IRF8!1.33!20.60!IRF8;;chr8:145560371..145560449,-!p1@SCRT1!1.33!20.46!SCRT1;;chr11:125034640..125034655,+!p1@PKNOX2!1.32!19.77!PKNOX2;;chr1:244219775..244219893,+!p2@ZNF238!1.30!25.72!ZNF238;;chr6:143266185..143266238,-!p2@HIVEP2!1.29!25.44!HIVEP2;;chr9:77112225..77112238,+!p2@RORB!1.29!18.53!RORB;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.53!ZBED1;;chr17:70117153..70117174,+!p1@SOX9!1.28!181.67!SOX9;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.88!HOPX;;chr19:46800289..46800327,+!p2@HIF3A!1.27!17.70!HIF3A;;chr6:126112039..126112062,+!p8@NCOA7!1.26!20.74!NCOA7;;chr6:28321971..28321995,-!p1@ZNF323!1.25!16.73!ZNF323;;chr6:19837592..19837621,+!p1@ID4!1.22!94.43!ID4;;chr7:63505799..63505904,+!p1@ZNF727!1.22!15.76!ZNF727;;chr14:58798013..58798071,+!p2@ARID4A!1.22!15.76!ARID4A;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.62!SPI1;;chr12:103351444..103351461,+!p1@ASCL1!1.21!15.21!ASCL1;;chr17:38219209..38219230,+!p1@THRA!1.20!191.49!THRA;;chr3:24536253..24536328,-!p1@THRB!1.20!28.20!THRB;;chr9:126773880..126773895,+!p2@LHX2!1.20!14.93!LHX2;;chr1:61548069..61548102,+!p3@NFIA!1.19!35.12!NFIA;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.40!ZNF385A;;chr14:33403648..33403710,+!p3@NPAS3!1.19!14.52!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.18!56.41!MEF2C;;chr2:95963120..95963136,+!p2@KCNIP3!1.18!14.10!KCNIP3;;chr12:24715376..24715432,-!p1@SOX5!1.17!17.42!SOX5;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.83!POU3F3;;chr9:3525867..3525902,-!p3@RFX3!1.16!46.45!RFX3;;chr2:60780607..60780624,-!p2@BCL11A!1.16!41.62!BCL11A;;chr2:200323414..200323455,-!p1@SATB2!1.16!28.62!SATB2;;chr15:31631789..31631811,+!p13@KLF13!1.16!13.41!KLF13;;chr7:73038839..73038862,-!p1@MLXIPL!1.16!13.41!MLXIPL;;chr19:7580549..7580596,+!p3@ZNF358!1.15!13.27!ZNF358;;chr9:126774058..126774081,+!p3@LHX2!1.15!13.13!LHX2;;chr2:162272716..162272753,+!p3@TBR1!1.15!13.13!TBR1;;chr16:51185318..51185348,-!p2@SALL1!1.15!13.00!SALL1;;chr16:67198633..67198671,+!p1@HSF4!1.15!13.00!HSF4;;chr6:15401104..15401166,+!p5@JARID2!1.14!12.86!JARID2;;chr11:113930291..113930339,+!p2@ZBTB16!1.13!20.32!ZBTB16;;chr14:33408072..33408114,+!p2@NPAS3!1.13!14.66!NPAS3;;chr11:113930401..113930422,+!p3@ZBTB16!1.13!12.44!ZBTB16;;chr2:162272889..162272915,+!p2@TBR1!1.13!12.44!TBR1;;chr9:3525910..3525955,-!p4@RFX3!1.12!36.92!RFX3;;chr15:61521417..61521460,-!p2@RORA!1.12!27.38!RORA;;chr2:2328299..2328363,-!p3@MYT1L!1.12!12.31!MYT1L;;chrX:70315688..70315709,+!p1@FOXO4!1.10!27.38!FOXO4;;chr3:141105705..141105770,+!p4@ZBTB38!1.10!14.10!ZBTB38;;chr19:57183114..57183145,-!p1@ZNF835!1.10!13.13!ZNF835;;chr2:166428839..166428859,+!p2@CSRNP3!1.10!11.48!CSRNP3;;chr16:67197654..67197716,+!p3@HSF4!1.10!11.48!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.48!ZNF366;;chr8:30890810..30890880,-!p1@PURG!1.10!11.48!PURG;;chr7:64023410..64023428,-!p2@ZNF680!1.09!18.11!ZNF680;;chr8:93074803..93074845,-!p1@RUNX1T1!1.09!11.34!RUNX1T1;;chr19:57352109..57352153,-!p2@ZIM2!1.09!11.34!ZIM2;;chr11:125034605..125034636,+!p2@PKNOX2!1.09!11.20!PKNOX2;;chr13:46549911..46549956,-!p3@ZC3H13!1.08!15.90!ZC3H13;;chr20:51588873..51588953,+!p1@TSHZ2!1.08!14.52!TSHZ2;;chr19:38720294..38720348,-!p1@DPF1!1.08!13.83!DPF1;;chrX:85969626..85969664,+!p1@DACH2!1.08!11.06!DACH2;;chr19:38085768..38085821,+!p1@ZNF540!1.07!16.18!ZNF540;;chr3:126076264..126076305,-!p2@KLF15!1.07!14.93!KLF15;;chr21:39870339..39870443,-!p1@ERG!1.07!10.78!ERG;;chr14:73360799..73360817,-!p1@DPF3!1.06!36.78!DPF3;;chr18:52989031..52989079,-!p2@TCF4!1.06!24.89!TCF4;;chrX:118739835..118739862,-!p1@NKRF!1.06!11.48!NKRF;;chr12:24102576..24102623,-!p2@SOX5!1.06!10.37!SOX5;;chr3:24536332..24536358,-!p2@THRB!1.06!10.37!THRB;;chr19:30863271..30863338,+!p1@ZNF536!1.06!10.37!ZNF536;;chr17:38256822..38256851,-!p1@NR1D1!1.05!80.74!NR1D1;;chr16:79634624..79634642,-!p1@MAF!1.05!40.23!MAF;;chr5:178368186..178368238,+!p1@ZNF454!1.05!18.53!ZNF454;;chr2:214016314..214016343,-!p2@IKZF2!1.05!17.14!IKZF2;;chr16:67198683..67198698,+!p2@HSF4!1.05!10.23!HSF4;;chr2:180726291..180726311,-!p1@ZNF385B!1.05!10.09!ZNF385B;;chr1:40105299..40105326,-!p1@HEYL!1.04!9.95!HEYL;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.95!OLIG1;;chr1:151032860..151032918,+!p1@MLLT11!1.03!117.10!MLLT11;;chr2:113057415..113057477,+!p3@ZC3H6!1.02!12.58!ZC3H6;;chr16:86544113..86544145,+!p1@FOXF1!1.02!11.89!FOXF1;;chr3:18466660..18466676,-!p5@SATB1!1.02!11.20!SATB1;;chr2:2330039..2330072,-!p6@MYT1L!1.02!9.40!MYT1L;;chr1:8585945..8586056,-!p3@RERE!1.01!31.80!RERE;;chr5:88179518..88179569,-!p5@MEF2C!1.01!12.17!MEF2C;;chr16:51185172..51185197,-!p1@SALL1!1.01!9.26!SALL1;;chr13:100634031..100634045,+!p1@ZIC2!1.01!9.26!ZIC2;;chr11:31832807..31832823,-!p4@PAX6!1.01!9.13!PAX6;;chr12:103352277..103352324,+!p2@ASCL1!1.01!9.13!ASCL1;;chr20:51589133..51589159,+!p2@TSHZ2!1.01!9.13!TSHZ2;;chr3:18466787..18466839,-!p1@SATB1!1.00!40.79!SATB1;;chr12:125003087..125003141,-!p4@NCOR2!0.99!11.34!NCOR2;;chr11:31832658..31832681,-!p1@PAX6!0.99!8.85!PAX6;;chr13:100623375..100623425,-!p1@ZIC5!0.99!8.85!ZIC5;;chr6:126112074..126112144,+!p1@NCOA7!0.98!117.10!NCOA7;;chr16:79634595..79634620,-!p2@MAF!0.98!15.90!MAF;;chr3:141105235..141105307,+!p7@ZBTB38!0.98!8.57!ZBTB38;;chr10:38265517..38265591,-!p1@ZNF25!0.97!33.18!ZNF25;;chr3:114819124..114819200,-!p3@ZBTB20!0.97!19.77!ZBTB20;;chr14:24020938..24020988,-!p1@ZFHX2!0.97!12.03!ZFHX2;;chr11:31839488..31839515,-!p3@PAX6!0.97!8.43!PAX6;;chr16:67197776..67197831,+!p4@HSF4!0.97!8.43!HSF4;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.30!SOX7;;chr20:62680984..62680999,-!p1@SOX18!0.96!10.78!SOX18;;chr5:88119715..88119757,-!p11@MEF2C!0.96!8.16!MEF2C;;chr6:28321827..28321856,-!p5@ZNF323!0.96!8.16!ZNF323;;chr7:39125511..39125560,+!p1@POU6F2!0.96!8.16!POU6F2;;chr5:138609489..138609542,+!p8@MATR3!0.96!8.02!MATR3;;chr13:45151434..45151507,-!p3@TSC22D1!0.95!44.80!TSC22D1;;chr19:21512202..21512225,-!p1@ZNF708!0.95!42.17!ZNF708;;chr19:53636125..53636178,-!p1@ZNF415!0.95!23.37!ZNF415;;chr12:26277929..26277955,-!p3@BHLHE41!0.95!11.48!BHLHE41;;chr10:119302182..119302196,+!p6@EMX2!0.95!7.88!EMX2;;chr10:119302268..119302282,+!p4@EMX2!0.95!7.88!EMX2;;chr2:100721281..100721307,-!p5@AFF3!0.95!7.88!AFF3;;chr6:28321909..28321965,-!p3@ZNF323!0.95!7.88!ZNF323;;chr7:28725740..28725778,+!p1@CREB5!0.94!71.20!CREB5;;chr1:8877692..8877732,-!p1@RERE!0.94!63.88!RERE;;chr7:64023441..64023462,-!p1@ZNF680!0.93!61.66!ZNF680;;chr19:21512144..21512191,-!p2@ZNF708!0.93!36.09!ZNF708;;chr3:187463179..187463201,-!p2@BCL6!0.93!31.80!BCL6;;chr15:31618903..31618962,+!p3@KLF13!0.93!21.29!KLF13;;chr8:60031682..60031710,-!p2@TOX!0.93!12.58!TOX;;chr8:22550530..22550609,-!p2@EGR3!0.93!7.60!EGR3;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000200;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002771;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520temporal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12316.10156-103A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10156-103A3
 |is_a=EFO:0002091;;FF:0010156
 |is_obsolete=
-|library_ids=CNhs12316
+|library_id=CNhs12316
+|library_id_phase_based=2:CNhs12316
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10156
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10156
 |name=medial temporal gyrus, adult, donor10252
 |namespace=FANTOM5
@@ Line 47: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12316,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 86: / Line 100: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10156-103A3;search_select_hide=table117:FF:10156-103A3
-|DRA_sample_Accession=CAGE@DRS008576
-|accession_numbers=DRX008685;DRR009557;DRZ000982;DRZ002367;CAGE
-|library_id=CNhs12316
 }}

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FF:10156-103A3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:23, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0