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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005202
|DRA_sample_Accession=CAGE@SAMD00005202
|accession_numbers=CAGE;DRX008685;DRR009557;DRZ000982;DRZ002367
|accession_numbers=CAGE;DRX008685;DRR009557;DRZ000982;DRZ002367;DRZ012332;DRZ013717
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0000200,UBERON:0002771,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10156
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10156
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10156
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10156
|name=medial temporal gyrus, adult, donor10252
|name=medial temporal gyrus, adult, donor10252
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 100: Line 100:
|top_motifs=MYFfamily:3.79668972681;DBP:3.79353758765;CUX2:3.76287172979;RREB1:3.65537105897;PRRX1,2:3.61964823225;REST:3.57368581869;NHLH1,2:3.56669034391;AHR_ARNT_ARNT2:3.56007413674;PRDM1:3.46654073862;HOXA9_MEIS1:3.37546528277;ZFP161:3.3315129548;EGR1..3:3.29167545368;OCT4_SOX2{dimer}:3.07993073556;ATF2:3.05344538419;MTE{core}:3.01832366409;MED-1{core}:3.00284688832;GATA4:2.9936994666;POU5F1:2.90253593465;PAX6:2.85401682352;GTF2I:2.82281211439;SOX2:2.81038169783;ZBTB6:2.77761328765;HBP1_HMGB_SSRP1_UBTF:2.72193488613;MZF1:2.64332574602;POU6F1:2.62765369977;TFAP2B:2.59227499348;NKX3-2:2.51533132025;BPTF:2.50773611416;FOXD3:2.50195445241;MTF1:2.49721901402;FOXQ1:2.48872874904;IKZF2:2.45847053851;ZNF384:2.40853332253;SOX5:2.34679061252;RFX2..5_RFXANK_RFXAP:2.33314757879;PAX4:2.33084965596;PATZ1:2.25633453155;FOXP1:2.23440264274;RFX1:2.20244240547;HIC1:2.19815959107;SOX{8,9,10}:2.1896798691;FOXM1:2.05735383806;ARID5B:2.04714261829;TGIF1:1.98434571758;PAX5:1.97488911078;NFIL3:1.9608494563;POU3F1..4:1.95819295708;FOX{F1,F2,J1}:1.94747105267;KLF4:1.9278741167;T:1.91517498994;BREu{core}:1.89354746932;HOX{A4,D4}:1.87888726186;CDC5L:1.85451795832;LMO2:1.85172501759;NKX6-1,2:1.82193446313;HMGA1,2:1.81733604565;TEF:1.76449445165;GFI1B:1.74129425966;NFIX:1.73242009409;MAZ:1.72295880274;SMAD1..7,9:1.68974848606;NRF1:1.55181770969;SOX17:1.51404259317;EP300:1.50440450444;POU1F1:1.48759668146;FOXP3:1.36759754179;XBP1:1.28649519859;LEF1_TCF7_TCF7L1,2:1.28436363866;TFDP1:1.2609588438;ZBTB16:1.24976146958;AR:1.23784535834;RBPJ:1.17674524307;ZNF143:1.11592659245;ALX1:1.05464639357;HAND1,2:1.05386733741;FOX{D1,D2}:1.02744354449;ADNP_IRX_SIX_ZHX:0.993371462378;JUN:0.974789516808;NR3C1:0.956315608826;TLX2:0.952585083005;SP1:0.947969942274;GCM1,2:0.939193762946;TOPORS:0.928052052981;MAFB:0.926063646563;ZNF238:0.904709987062;GTF2A1,2:0.901717078624;STAT1,3:0.882667513775;EBF1:0.857319402587;FOXL1:0.802920381313;STAT2,4,6:0.802294495539;SPZ1:0.800745728287;MYBL2:0.79085145935;SREBF1,2:0.766918785236;NANOG:0.754476540206;ONECUT1,2:0.744470019357;FOX{I1,J2}:0.740657542418;HMX1:0.740214788883;RORA:0.650362023934;ZNF423:0.631399836045;TLX1..3_NFIC{dimer}:0.604807181626;NKX2-3_NKX2-5:0.597227890455;CRX:0.58911172389;MYOD1:0.570450745821;TFAP2{A,C}:0.55903450939;GFI1:0.51902736615;CREB1:0.468629041042;ZEB1:0.440590752509;FOXN1:0.429279786306;FOXO1,3,4:0.390500509449;AIRE:0.388792435047;GZF1:0.36606848209;ESRRA:0.281319850907;ZIC1..3:0.264589796112;MEF2{A,B,C,D}:0.217519887183;ATF5_CREB3:0.191737390756;IRF7:0.169742772711;YY1:0.164148177605;PBX1:0.152132648251;UFEwm:0.120442062343;LHX3,4:0.07747285772;PAX2:0.0650223726758;PDX1:0.0277687478935;NFATC1..3:-0.0163507270784;NFY{A,B,C}:-0.0554869202687;ATF4:-0.0769873381679;IRF1,2:-0.0925257366098;XCPE1{core}:-0.116659197993;CDX1,2,4:-0.127583926316;NKX2-2,8:-0.13856951839;PAX1,9:-0.156067387421;PITX1..3:-0.16600991535;FOXA2:-0.20448843963;DMAP1_NCOR{1,2}_SMARC:-0.242219597845;IKZF1:-0.333846644303;NFE2L2:-0.369369998488;NKX3-1:-0.384761904986;SPI1:-0.393404807363;HSF1,2:-0.415820442918;PAX3,7:-0.43665820537;TBX4,5:-0.454550152066;HOX{A6,A7,B6,B7}:-0.471151531273;EVI1:-0.475495185668;bHLH_family:-0.529083509218;VSX1,2:-0.551921259633;NANOG{mouse}:-0.609618768253;CEBPA,B_DDIT3:-0.6134707485;SNAI1..3:-0.671369760364;SPIB:-0.678503613127;NFE2:-0.696716269955;GATA6:-0.749479169103;ETS1,2:-0.85828984551;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.898272160433;NR1H4:-0.972727723993;TFAP4:-0.986270072413;PAX8:-0.994240262174;HNF1A:-1.04137148104;HIF1A:-1.07273637184;HNF4A_NR2F1,2:-1.09107160743;E2F1..5:-1.09809293804;BACH2:-1.15322740312;TP53:-1.16249404073;TAL1_TCF{3,4,12}:-1.17584949896;TEAD1:-1.17731933593;FOSL2:-1.1951342821;POU2F1..3:-1.2300520687;ZNF148:-1.24248395985;FOS_FOS{B,L1}_JUN{B,D}:-1.24637728624;NFE2L1:-1.26648206751;ATF6:-1.30288938251;RUNX1..3:-1.33425069826;NFKB1_REL_RELA:-1.34916125644;ELK1,4_GABP{A,B1}:-1.35531664981;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38965290348;NR5A1,2:-1.39109148958;TFCP2:-1.42528625292;ELF1,2,4:-1.4510398664;RXR{A,B,G}:-1.46419977345;HLF:-1.58409342245;NKX2-1,4:-1.58576035281;ALX4:-1.63811995151;GLI1..3:-1.70616831994;TBP:-1.70651035643;PPARG:-1.71721089326;MYB:-1.75143536502;RXRA_VDR{dimer}:-1.89696101923;ESR1:-1.8987754455;SRF:-1.94677419517;HOX{A5,B5}:-2.32083032777;STAT5{A,B}:-2.45054287941;NR6A1:-2.58298533512;EN1,2:-2.88998579279;HES1:-2.99224734044
|top_motifs=MYFfamily:3.79668972681;DBP:3.79353758765;CUX2:3.76287172979;RREB1:3.65537105897;PRRX1,2:3.61964823225;REST:3.57368581869;NHLH1,2:3.56669034391;AHR_ARNT_ARNT2:3.56007413674;PRDM1:3.46654073862;HOXA9_MEIS1:3.37546528277;ZFP161:3.3315129548;EGR1..3:3.29167545368;OCT4_SOX2{dimer}:3.07993073556;ATF2:3.05344538419;MTE{core}:3.01832366409;MED-1{core}:3.00284688832;GATA4:2.9936994666;POU5F1:2.90253593465;PAX6:2.85401682352;GTF2I:2.82281211439;SOX2:2.81038169783;ZBTB6:2.77761328765;HBP1_HMGB_SSRP1_UBTF:2.72193488613;MZF1:2.64332574602;POU6F1:2.62765369977;TFAP2B:2.59227499348;NKX3-2:2.51533132025;BPTF:2.50773611416;FOXD3:2.50195445241;MTF1:2.49721901402;FOXQ1:2.48872874904;IKZF2:2.45847053851;ZNF384:2.40853332253;SOX5:2.34679061252;RFX2..5_RFXANK_RFXAP:2.33314757879;PAX4:2.33084965596;PATZ1:2.25633453155;FOXP1:2.23440264274;RFX1:2.20244240547;HIC1:2.19815959107;SOX{8,9,10}:2.1896798691;FOXM1:2.05735383806;ARID5B:2.04714261829;TGIF1:1.98434571758;PAX5:1.97488911078;NFIL3:1.9608494563;POU3F1..4:1.95819295708;FOX{F1,F2,J1}:1.94747105267;KLF4:1.9278741167;T:1.91517498994;BREu{core}:1.89354746932;HOX{A4,D4}:1.87888726186;CDC5L:1.85451795832;LMO2:1.85172501759;NKX6-1,2:1.82193446313;HMGA1,2:1.81733604565;TEF:1.76449445165;GFI1B:1.74129425966;NFIX:1.73242009409;MAZ:1.72295880274;SMAD1..7,9:1.68974848606;NRF1:1.55181770969;SOX17:1.51404259317;EP300:1.50440450444;POU1F1:1.48759668146;FOXP3:1.36759754179;XBP1:1.28649519859;LEF1_TCF7_TCF7L1,2:1.28436363866;TFDP1:1.2609588438;ZBTB16:1.24976146958;AR:1.23784535834;RBPJ:1.17674524307;ZNF143:1.11592659245;ALX1:1.05464639357;HAND1,2:1.05386733741;FOX{D1,D2}:1.02744354449;ADNP_IRX_SIX_ZHX:0.993371462378;JUN:0.974789516808;NR3C1:0.956315608826;TLX2:0.952585083005;SP1:0.947969942274;GCM1,2:0.939193762946;TOPORS:0.928052052981;MAFB:0.926063646563;ZNF238:0.904709987062;GTF2A1,2:0.901717078624;STAT1,3:0.882667513775;EBF1:0.857319402587;FOXL1:0.802920381313;STAT2,4,6:0.802294495539;SPZ1:0.800745728287;MYBL2:0.79085145935;SREBF1,2:0.766918785236;NANOG:0.754476540206;ONECUT1,2:0.744470019357;FOX{I1,J2}:0.740657542418;HMX1:0.740214788883;RORA:0.650362023934;ZNF423:0.631399836045;TLX1..3_NFIC{dimer}:0.604807181626;NKX2-3_NKX2-5:0.597227890455;CRX:0.58911172389;MYOD1:0.570450745821;TFAP2{A,C}:0.55903450939;GFI1:0.51902736615;CREB1:0.468629041042;ZEB1:0.440590752509;FOXN1:0.429279786306;FOXO1,3,4:0.390500509449;AIRE:0.388792435047;GZF1:0.36606848209;ESRRA:0.281319850907;ZIC1..3:0.264589796112;MEF2{A,B,C,D}:0.217519887183;ATF5_CREB3:0.191737390756;IRF7:0.169742772711;YY1:0.164148177605;PBX1:0.152132648251;UFEwm:0.120442062343;LHX3,4:0.07747285772;PAX2:0.0650223726758;PDX1:0.0277687478935;NFATC1..3:-0.0163507270784;NFY{A,B,C}:-0.0554869202687;ATF4:-0.0769873381679;IRF1,2:-0.0925257366098;XCPE1{core}:-0.116659197993;CDX1,2,4:-0.127583926316;NKX2-2,8:-0.13856951839;PAX1,9:-0.156067387421;PITX1..3:-0.16600991535;FOXA2:-0.20448843963;DMAP1_NCOR{1,2}_SMARC:-0.242219597845;IKZF1:-0.333846644303;NFE2L2:-0.369369998488;NKX3-1:-0.384761904986;SPI1:-0.393404807363;HSF1,2:-0.415820442918;PAX3,7:-0.43665820537;TBX4,5:-0.454550152066;HOX{A6,A7,B6,B7}:-0.471151531273;EVI1:-0.475495185668;bHLH_family:-0.529083509218;VSX1,2:-0.551921259633;NANOG{mouse}:-0.609618768253;CEBPA,B_DDIT3:-0.6134707485;SNAI1..3:-0.671369760364;SPIB:-0.678503613127;NFE2:-0.696716269955;GATA6:-0.749479169103;ETS1,2:-0.85828984551;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.898272160433;NR1H4:-0.972727723993;TFAP4:-0.986270072413;PAX8:-0.994240262174;HNF1A:-1.04137148104;HIF1A:-1.07273637184;HNF4A_NR2F1,2:-1.09107160743;E2F1..5:-1.09809293804;BACH2:-1.15322740312;TP53:-1.16249404073;TAL1_TCF{3,4,12}:-1.17584949896;TEAD1:-1.17731933593;FOSL2:-1.1951342821;POU2F1..3:-1.2300520687;ZNF148:-1.24248395985;FOS_FOS{B,L1}_JUN{B,D}:-1.24637728624;NFE2L1:-1.26648206751;ATF6:-1.30288938251;RUNX1..3:-1.33425069826;NFKB1_REL_RELA:-1.34916125644;ELK1,4_GABP{A,B1}:-1.35531664981;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.38965290348;NR5A1,2:-1.39109148958;TFCP2:-1.42528625292;ELF1,2,4:-1.4510398664;RXR{A,B,G}:-1.46419977345;HLF:-1.58409342245;NKX2-1,4:-1.58576035281;ALX4:-1.63811995151;GLI1..3:-1.70616831994;TBP:-1.70651035643;PPARG:-1.71721089326;MYB:-1.75143536502;RXRA_VDR{dimer}:-1.89696101923;ESR1:-1.8987754455;SRF:-1.94677419517;HOX{A5,B5}:-2.32083032777;STAT5{A,B}:-2.45054287941;NR6A1:-2.58298533512;EN1,2:-2.88998579279;HES1:-2.99224734044
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10156-103A3;search_select_hide=table117:FF:10156-103A3
}}
}}

Latest revision as of 12:23, 3 June 2020

Name:medial temporal gyrus, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12316
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemedial temporal gyrus
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005202
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12316 CAGE DRX008685 DRR009557
Accession ID Hg19

Library idBAMCTSS
CNhs12316 DRZ000982 DRZ002367
Accession ID Hg38

Library idBAMCTSS
CNhs12316 DRZ012332 DRZ013717
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.377
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis1.062
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.287
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.106
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.111
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.576
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0562
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.175
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0562
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.151
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.262
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.106
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0471
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.236
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.936
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0562
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0562
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0424
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.101
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0213
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.096
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.731
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.214
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.377
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.106
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.591
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.00467
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.591
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0562
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.635
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.106
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.364
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.534
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.522
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0562
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.635
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.142
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0562
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.0811
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.228
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0562
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.675
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.745
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.128
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.507
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0562
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.7
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0562
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12316

Jaspar motifP-value
MA0002.20.0456
MA0003.10.24
MA0004.10.384
MA0006.10.253
MA0007.10.322
MA0009.10.196
MA0014.10.639
MA0017.14.89648e-4
MA0018.20.512
MA0019.10.593
MA0024.10.92
MA0025.10.517
MA0027.10.545
MA0028.10.0565
MA0029.10.0371
MA0030.10.605
MA0031.10.999
MA0035.20.00737
MA0038.10.45
MA0039.20.139
MA0040.10.657
MA0041.10.398
MA0042.10.93
MA0043.11
MA0046.10.00189
MA0047.20.0598
MA0048.10.149
MA0050.10.0322
MA0051.10.0785
MA0052.10.522
MA0055.10.00122
MA0057.10.851
MA0058.10.311
MA0059.10.0733
MA0060.10.736
MA0061.10.00699
MA0062.20.00307
MA0065.21.39873e-4
MA0066.10.00913
MA0067.10.896
MA0068.10.512
MA0069.10.473
MA0070.10.589
MA0071.10.0118
MA0072.10.241
MA0073.10.436
MA0074.10.227
MA0076.10.104
MA0077.10.156
MA0078.10.88
MA0079.20.738
MA0080.27.78161e-8
MA0081.10.0337
MA0083.10.00922
MA0084.10.704
MA0087.10.868
MA0088.10.236
MA0090.10.369
MA0091.10.53
MA0092.10.27
MA0093.10.382
MA0099.22.93582e-20
MA0100.10.539
MA0101.10.00283
MA0102.20.186
MA0103.10.145
MA0104.20.416
MA0105.10.00179
MA0106.10.0472
MA0107.10.00319
MA0108.20.0928
MA0111.10.606
MA0112.20.00104
MA0113.10.534
MA0114.19.63936e-4
MA0115.10.321
MA0116.10.00864
MA0117.10.852
MA0119.10.12
MA0122.10.581
MA0124.10.671
MA0125.10.484
MA0131.10.996
MA0135.10.158
MA0136.17.06887e-12
MA0137.20.86
MA0138.20.467
MA0139.10.424
MA0140.10.00122
MA0141.10.00155
MA0142.10.762
MA0143.10.584
MA0144.10.428
MA0145.10.155
MA0146.10.0144
MA0147.10.309
MA0148.10.0823
MA0149.10.0245
MA0150.12.26098e-4
MA0152.10.478
MA0153.10.084
MA0154.10.0501
MA0155.10.48
MA0156.14.89123e-8
MA0157.10.658
MA0159.10.00402
MA0160.10.00821
MA0162.10.102
MA0163.12.25812e-5
MA0164.10.767
MA0258.10.00941
MA0259.10.828



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12316

Novel motifP-value
10.0728
100.0602
1000.366
1010.469
1020.975
1030.139
1040.174
1050.157
1060.0464
1070.0983
1080.955
1090.00154
110.0126
1100.0516
1110.225
1120.376
1130.497
1140.186
1150.987
1160.125
1170.0123
1180.142
1190.213
120.479
1200.241
1210.26
1220.837
1230.58
1240.147
1250.192
1260.0238
1270.579
1280.145
1290.564
130.00113
1300.147
1310.0439
1320.558
1330.0843
1340.583
1350.188
1366.04582e-4
1370.861
1380.983
1390.115
140.829
1400.702
1410.579
1420.906
1430.107
1440.903
1450.137
1460.541
1470.832
1480.395
1490.243
150.093
1500.149
1510.657
1520.0747
1530.85
1540.458
1550.947
1560.466
1570.454
1580.137
1590.0153
160.0414
1600.217
1610.205
1620.66
1630.641
1640.0467
1650.045
1660.898
1670.993
1680.577
1690.0117
170.119
180.115
190.183
20.808
200.143
210.058
220.192
230.404
240.0224
250.475
263.8457e-4
270.74
280.644
290.00773
30.0523
300.931
310.861
320.0245
330.0488
340.598
350.636
360.194
370.0323
380.358
390.22
40.802
400.0272
410.312
420.259
430.13
440.156
450.633
460.0889
470.0684
480.0545
490.252
50.786
500.34
510.426
520.476
530.81
540.391
550.528
560.461
570.363
580.31
590.0723
60.904
600.0663
610.0735
620.187
630.212
640.207
650.256
660.164
670.357
680.21
690.371
70.0547
700.0558
710.0108
720.402
730.0231
740.941
750.0404
760.477
770.129
780.00223
790.394
80.0641
800.457
810.662
820.593
830.0485
840.593
850.244
860.221
875.25242e-5
880.796
890.356
90.337
900.086
910.863
920.532
930.94
940.202
950.00843
960.794
970.773
980.302
990.546



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12316


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0000200 (gyrus)
0002771 (middle temporal gyrus)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010156 (human medial temporal gyrus donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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