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{{f5samples
{{f5samples
|id=FF:10158-103A5
|DRA_sample_Accession=CAGE@SAMD00005263
|name=substantia nigra, adult, donor10252
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005263
|sample_id=10158
|HumanCAGEScanFiles=NCig10029;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/substantia%2520nigra%252c%2520adult%252c%2520donor10252.NCig10029.10158-103A5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/substantia%2520nigra%252c%2520adult%252c%2520donor10252.NCig10029.10158-103A5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/substantia%2520nigra%252c%2520adult%252c%2520donor10252.NCig10029.10158-103A5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/substantia%2520nigra%252c%2520adult%252c%2520donor10252.NCig10029.10158-103A5.hg19.GCTATA.pairs.bed.gz
|rna_tube_id=103A5
|accession_numbers=CAGE;DRX008735;DRR009607;DRZ001032;DRZ002417;DRZ012382;DRZ013767
|rna_box=103
|accession_numbers_RNASeq=RNA-Seq;DRX057153;DRR062912;DRZ007988
|rna_position=A5
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002038,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0009661,UBERON:0000125,UBERON:0002950,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001893,UBERON:0001890,UBERON:0001891,UBERON:0010011,UBERON:0000454
|sample_cell_lot=NA
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|sample_cell_catalog=NA
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=substantia nigra
|sample_donor(cell lot)=donor: 10252
|sample_sex=female
|sample_age=76
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.21
|rna_od260/280=1.95
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Peter Heutink
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=33.85725
|rna_concentration=0.45143
|sample_note=
|profile_hcage=CNhs12318,LSID913,release011,COMPLETED
|profile_cagescan=NCig10029,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000073,UBERON:0000125,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001890,UBERON:0001891,UBERON:0001893,UBERON:0002020,UBERON:0002038,UBERON:0002050,UBERON:0002298,UBERON:0002308,UBERON:0002346,UBERON:0002420,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0002791,UBERON:0002950,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0003528,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0006331,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010158
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.81!650.91!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.53!339.28!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.45!277.65!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.33!437.62!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.29!193.08!ST18;;chr10:134599649..134599653,-!p1@NKX6-2!2.12!129.87!NKX6-2;;chr2:145277882..145277967,-!p3@ZEB2!1.93!141.19!ZEB2;;chr16:1031762..1031781,+!p1@SOX8!1.91!80.27!SOX8;;chr10:48355030..48355090,+!p1@ZNF488!1.87!93.17!ZNF488;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.87!73.96!POU3F3;;chr8:53322347..53322378,-!p2@ST18!1.86!71.67!ST18;;chr21:34398234..34398250,+!p1@OLIG2!1.85!70.38!OLIG2;;chr3:181429704..181429722,+!p1@SOX2!1.81!64.22!SOX2;;chr12:26277817..26277863,-!p2@BHLHE41!1.80!82.71!BHLHE41;;chr12:26277956..26277980,-!p1@BHLHE41!1.74!184.33!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.74!54.33!OLIG1;;chr11:113930425..113930471,+!p1@ZBTB16!1.71!71.96!ZBTB16;;chr19:46801639..46801699,+!p1@HIF3A!1.67!46.01!HIF3A;;chr11:47400078..47400106,-!p1@SPI1!1.60!38.42!SPI1;;chr3:126076242..126076257,-!p1@KLF15!1.59!47.30!KLF15;;chr4:81118647..81118666,+!p1@PRDM8!1.56!46.73!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!1.56!35.40!IRF8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.56!35.26!PEG3;;chr9:114287433..114287513,+!p1@ZNF483!1.54!84.14!ZNF483;;chr1:214161272..214161322,+!p1@PROX1!1.49!41.43!PROX1;;chr12:106976774..106976788,+!p1@RFX4!1.48!29.38!RFX4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.45!27.23!POU3F3;;chr19:13135386..13135435,+!p4@NFIX!1.44!26.52!NFIX;;chr12:106976678..106976708,+!p2@RFX4!1.41!24.51!RFX4;;chr15:80696703..80696754,+!p1@ARNT2!1.40!31.68!ARNT2;;chr12:54779511..54779577,-!p5@ZNF385A!1.37!22.22!ZNF385A;;chr3:181429741..181429767,+!p2@SOX2!1.35!21.64!SOX2;;chr16:79634624..79634642,-!p1@MAF!1.34!80.70!MAF;;chr19:30863271..30863338,+!p1@ZNF536!1.34!20.78!ZNF536;;chr16:51185172..51185197,-!p1@SALL1!1.32!20.07!SALL1;;chr3:126076264..126076305,-!p2@KLF15!1.31!26.80!KLF15;;chr2:178128250..178128293,-!p6@NFE2L2!1.30!47.02!NFE2L2;;chr7:115670804..115670825,-!p1@TFEC!1.30!18.78!TFEC;;chr19:21512144..21512191,-!p2@ZNF708!1.29!85.00!ZNF708;;chr7:63505799..63505904,+!p1@ZNF727!1.29!18.49!ZNF727;;chr12:26277929..26277955,-!p3@BHLHE41!1.28!25.37!BHLHE41;;chr6:28321971..28321995,-!p1@ZNF323!1.27!17.77!ZNF323;;chr16:51185318..51185348,-!p2@SALL1!1.27!17.49!SALL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.91!ZBED1;;chr2:68592406..68592424,+!p1@PLEK!1.24!16.48!PLEK;;chr1:61548069..61548102,+!p3@NFIA!1.23!38.56!NFIA;;chr17:47439437..47439533,-!p1@ZNF652!1.22!124.28!ZNF652;;chr19:13135582..13135600,+!p3@NFIX!1.22!15.48!NFIX;;chr10:64134120..64134183,+!p1@ZNF365!1.21!18.49!ZNF365;;chr19:21512115..21512135,-!p3@ZNF708!1.20!30.53!ZNF708;;chr14:33408072..33408114,+!p2@NPAS3!1.19!17.34!NPAS3;;chr16:67198633..67198671,+!p1@HSF4!1.19!14.33!HSF4;;chr20:21494654..21494678,-!p2@NKX2-2!1.19!14.33!NKX2-2;;chr2:214016314..214016343,-!p2@IKZF2!1.18!23.65!IKZF2;;chr22:41763452..41763466,+!p2@TEF!1.17!13.76!TEF;;chr12:103351444..103351461,+!p1@ASCL1!1.17!13.76!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.16!82.56!ID4;;chr1:40105299..40105326,-!p1@HEYL!1.16!13.47!HEYL;;chr8:53322411..53322422,-!p6@ST18!1.16!13.33!ST18;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!13.19!KCNIP3;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.63!NFATC2;;chr3:114343039..114343085,-!p8@ZBTB20!1.14!12.76!ZBTB20;;chr19:21512202..21512225,-!p1@ZNF708!1.13!64.36!ZNF708;;chr3:114343768..114343822,-!p1@ZBTB20!1.13!54.33!ZBTB20;;chr2:177053386..177053402,+!p1@HOXD1!1.13!12.61!HOXD1;;chr19:38085768..38085821,+!p1@ZNF540!1.12!18.20!ZNF540;;chr14:33403881..33403924,+!p1@NPAS3!1.12!12.33!NPAS3;;chr21:39870339..39870443,-!p1@ERG!1.12!12.04!ERG;;chr7:50344289..50344323,+!p1@IKZF1!1.11!11.75!IKZF1;;chr3:187463179..187463201,-!p2@BCL6!1.10!48.45!BCL6;;chr6:41701557..41701578,-!p3@TFEB!1.10!11.47!TFEB;;chr19:53636125..53636178,-!p1@ZNF415!1.09!31.96!ZNF415;;chr16:79634595..79634620,-!p2@MAF!1.09!20.93!MAF;;chr11:113930291..113930339,+!p2@ZBTB16!1.09!18.78!ZBTB16;;chr21:34442584..34442587,+!p3@OLIG1!1.09!11.32!OLIG1;;chr4:26344778..26344807,+!p8@RBPJ!1.09!11.32!RBPJ;;chr2:95963120..95963136,+!p2@KCNIP3!1.09!11.18!KCNIP3;;chr6:126112074..126112144,+!p1@NCOA7!1.08!148.93!NCOA7;;chr2:145275982..145276003,-!p7@ZEB2!1.07!10.75!ZEB2;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.75!HIF3A;;chr17:38219209..38219230,+!p1@THRA!1.06!137.46!THRA;;chr14:73360799..73360817,-!p1@DPF3!1.06!36.98!DPF3;;chr11:113930401..113930422,+!p3@ZBTB16!1.06!10.61!ZBTB16;;chr16:67198683..67198698,+!p2@HSF4!1.06!10.46!HSF4;;chr6:41701581..41701613,-!p2@TFEB!1.06!10.46!TFEB;;chr6:126070769..126070801,+!p1@HEY2!1.05!11.75!HEY2;;chr8:53322384..53322393,-!p7@ST18!1.05!10.18!ST18;;chr18:52989031..52989079,-!p2@TCF4!1.03!23.08!TCF4;;chr15:42749722..42749739,-!p2@ZFP106!1.03!17.63!ZFP106;;chr2:166326200..166326216,+!p1@CSRNP3!1.03!14.33!CSRNP3;;chr7:28725740..28725778,+!p1@CREB5!1.01!83.14!CREB5;;chr17:17726907..17726958,-!p2@SREBF1!1.01!58.91!SREBF1;;chr11:47400062..47400077,-!p2@SPI1!1.01!9.32!SPI1;;chr12:26277798..26277809,-!p5@BHLHE41!1.01!9.17!BHLHE41;;chr20:21494684..21494708,-!p1@NKX2-2!1.01!9.17!NKX2-2;;chr18:6414884..6414942,-!p1@L3MBTL4!1.00!11.47!L3MBTL4;;chr3:147127142..147127168,+!p1@ZIC1!1.00!8.89!ZIC1;;chr10:48359344..48359376,+!p2@ZNF488!0.98!8.60!ZNF488;;chr14:33403648..33403710,+!p3@NPAS3!0.98!8.60!NPAS3;;chr7:64023441..64023462,-!p1@ZNF680!0.97!68.09!ZNF680;;chr9:14314946..14314983,-!p8@NFIB!0.97!8.31!NFIB;;chrX:70315688..70315709,+!p1@FOXO4!0.96!19.49!FOXO4;;chr18:47814186..47814232,-!p2@CXXC1!0.96!17.20!CXXC1;;chr10:111987079..111987115,+!p3@MXI1!0.96!11.32!MXI1;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.17!PAX6;;chr4:26344754..26344772,+!p10@RBPJ!0.96!8.17!RBPJ;;chr9:1050331..1050363,+!p1@DMRT2!0.96!8.17!DMRT2;;chr3:114819124..114819200,-!p3@ZBTB20!0.95!18.92!ZBTB20;;chr16:86544113..86544145,+!p1@FOXF1!0.95!10.03!FOXF1;;chr6:41701898..41701939,-!p5@TFEB!0.95!7.88!TFEB;;chr11:8102846..8102892,+!p1@TUB!0.94!11.04!TUB;;chr1:61924375..61924380,+!p6@NFIA!0.94!11.04!NFIA;;chr1:170632285..170632309,+!p1@PRRX1!0.94!8.74!PRRX1;;chr17:53342311..53342400,+!p1@HLF!0.93!8.60!HLF;;chr10:64134045..64134083,+!p3@ZNF365!0.93!7.60!ZNF365;;chr12:54778471..54778528,-!p1@ZNF385A!0.93!7.60!ZNF385A;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.27!SOX9;;chr3:114866084..114866118,-!p2@ZBTB20!0.92!27.52!ZBTB20;;chr15:57210961..57211012,+!p3@TCF12!0.92!24.08!TCF12;;chr5:124084493..124084524,-!p2@ZNF608!0.92!16.91!ZNF608;;chr8:80679993..80680011,-!p1@HEY1!0.92!10.75!HEY1;;chr16:79633894..79633954,-!p3@MAF!0.91!14.05!MAF;;chr12:125003087..125003141,-!p4@NCOR2!0.91!9.32!NCOR2;;chr5:71803177..71803255,-!p1@ZNF366!0.91!7.17!ZNF366;;chr7:50343634..50343717,+!p2@IKZF1!0.91!7.17!IKZF1;;chr5:92918919..92918942,+!p1@NR2F1!0.90!32.11!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.90!TCF12;;chr20:2673383..2673441,+!p1@EBF4!0.90!11.18!EBF4;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.90!6.88!ZNF676;;chr5:76383017..76383068,-!p1@ZBED3!0.89!25.80!ZBED3;;chr9:73029219..73029289,-!p2@KLF9!0.89!21.50!KLF9;;chr2:74229812..74229867,+!p1@TET3!0.89!17.49!TET3;;chr15:41913690..41913753,+!p2@MGA!0.89!17.06!MGA;;chr7:86781858..86781879,+!p3@DMTF1!0.89!11.18!DMTF1;;chr7:128577972..128578047,+!p1@IRF5!0.89!10.89!IRF5;;chr16:4323246..4323299,-!p5@TFAP4!0.89!6.74!TFAP4;;chr19:37096139..37096170,-!p2@ZNF529!0.88!19.21!ZNF529;;chr17:7492684..7492778,-!p2@SOX15!0.88!14.48!SOX15;;chr19:57183114..57183145,-!p1@ZNF835!0.88!7.45!ZNF835;;chr11:34654104..34654118,+!p5@EHF!0.88!6.59!EHF;;chr19:13134457..13134462,+!p5@NFIX!0.87!11.90!NFIX;;chr5:178368186..178368238,+!p1@ZNF454!0.87!11.75!ZNF454;;chrX:107018969..107019024,-!p6@TSC22D3!0.87!9.03!TSC22D3;;chr8:30890810..30890880,-!p1@PURG!0.87!6.45!PURG;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.08!CREB5;;chr3:52001396..52001425,-!p4@PCBP4!0.86!11.47!PCBP4;;chr20:62680984..62680999,-!p1@SOX18!0.86!8.46!SOX18;;chr9:77112244..77112262,+!p1@RORB!0.86!7.02!RORB;;chr10:111985777..111985788,+!p4@MXI1!0.86!6.16!MXI1;;chr5:172483347..172483407,+!p1@C5orf41!0.85!48.88!CREBRF;;chr3:52001426..52001447,-!p3@PCBP4!0.85!17.92!PCBP4;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.02!IRX2;;chr5:88178983..88179012,-!p1@MEF2C!0.84!49.17!MEF2C;;chr19:11959532..11959593,+!p1@ZNF439!0.84!23.94!ZNF439;;chr20:51588873..51588953,+!p1@TSHZ2!0.84!8.03!TSHZ2;;chr5:124082322..124082364,-!p1@ZNF608!0.83!15.62!ZNF608;;chr19:57019215..57019250,+!p1@ZNF471!0.83!9.03!ZNF471;;chr1:47697539..47697573,-!p3@TAL1!0.83!5.73!TAL1;;chr6:15401104..15401166,+!p5@JARID2!0.83!5.73!JARID2;;chr8:10588010..10588030,-!p1@SOX7!0.83!5.73!SOX7;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.83!5.73!POU3F3;;chr12:106976656..106976672,+!p4@RFX4!0.83!5.73!RFX4;;chr19:58446721..58446779,-!p1@ZNF418!0.82!16.34!ZNF418;;chr6:91006518..91006570,-!p1@BACH2!0.82!13.47!BACH2;;chr16:51185439..51185450,-!p8@SALL1!0.82!5.59!SALL1;;chr2:145277640..145277771,-!p1@ZEB2!0.81!78.26!ZEB2;;chrX:101186981..101187030,-!p1@ZMAT1!0.81!18.78!ZMAT1;;chr19:38085633..38085706,-!p1@ZNF571!0.81!15.19!ZNF571;;chrX:107019163..107019179,-!p7@TSC22D3!0.81!6.45!TSC22D3;;chr7:86781916..86781963,+!p2@DMTF1!0.80!24.94!DMTF1;;chr18:22932080..22932170,-!p1@ZNF521!0.80!24.22!ZNF521;;chr8:77593474..77593612,+!p1@ZFHX4!0.80!24.08!ZFHX4;;chr7:64023410..64023428,-!p2@ZNF680!0.80!8.60!ZNF680;;chr7:6655225..6655279,+!p1@ENST00000457543!0.80!8.31!ZNF853;;chr18:53068911..53068935,-!p4@TCF4!0.80!6.02!TCF4;;chr12:24102576..24102623,-!p2@SOX5!0.80!5.30!SOX5;;chr10:38265517..38265591,-!p1@ZNF25!0.79!21.64!ZNF25;;chr19:9879350..9879419,-!p2@ZNF846!0.79!11.75!ZNF846;;chr19:13213662..13213686,-!p1@LYL1!0.79!7.88!LYL1;;chr17:41277479..41277510,-!p5@BRCA1!0.79!7.45!BRCA1;;chr18:56530756..56530774,+!p6@ZNF532!0.79!7.02!ZNF532;;chr12:24715376..24715432,-!p1@SOX5!0.79!6.74!SOX5;;chr1:61548118..61548129,+!p9@NFIA!0.79!5.88!NFIA;;chr12:26276197..26276214,-!p8@BHLHE41!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002038;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 44:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/substantia%2520nigra%252c%2520adult%252c%2520donor10252.CNhs12318.10158-103A5.hg38.nobarcode.ctss.bed.gz
|id=FF:10158-103A5
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|is_obsolete=
|library_id=CNhs12318
|library_id_phase_based=2:CNhs12318
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10158
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10158
|name=substantia nigra, adult, donor10252
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_hcage=CNhs12318,LSID913,release011,COMPLETED
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|rna_box=103
|rna_catalog_number=
|rna_concentration=0.45143
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.21
|rna_od260/280=1.95
|rna_position=A5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=103A5
|rna_weight_ug=33.85725
|rnaseq_library_id=RDhi10096
|sample_age=76
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Peter Heutink
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor: 10252
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.80572568389827e-246!GO:0005737;cytoplasm;7.14375093176133e-151!GO:0043226;organelle;6.92505167570884e-125!GO:0043229;intracellular organelle;1.59285640367004e-124!GO:0043227;membrane-bound organelle;2.15495123261607e-121!GO:0043231;intracellular membrane-bound organelle;2.74440183982848e-121!GO:0044444;cytoplasmic part;3.5624412941152e-99!GO:0005515;protein binding;1.66369004791487e-72!GO:0044422;organelle part;3.21905301167401e-71!GO:0044446;intracellular organelle part;3.28562585486714e-70!GO:0032991;macromolecular complex;3.1284466499527e-58!GO:0003723;RNA binding;8.80499554235599e-45!GO:0030529;ribonucleoprotein complex;1.55704378792145e-44!GO:0044238;primary metabolic process;3.21922627060256e-44!GO:0044237;cellular metabolic process;1.57614909015514e-43!GO:0005739;mitochondrion;5.52774847394151e-42!GO:0043233;organelle lumen;9.82419819711943e-42!GO:0031974;membrane-enclosed lumen;9.82419819711943e-42!GO:0005634;nucleus;1.86251832308656e-41!GO:0016043;cellular component organization and biogenesis;4.23324943219345e-41!GO:0044428;nuclear part;9.76875225043314e-41!GO:0043170;macromolecule metabolic process;4.61635645932053e-40!GO:0033036;macromolecule localization;5.29387466202291e-38!GO:0015031;protein transport;7.15266337024396e-37!GO:0031090;organelle membrane;2.12485957633045e-36!GO:0008104;protein localization;1.08530047848296e-34!GO:0045184;establishment of protein localization;7.33484371228284e-34!GO:0043234;protein complex;1.40285433842951e-30!GO:0046907;intracellular transport;2.19475276701016e-30!GO:0016071;mRNA metabolic process;8.1135808683489e-30!GO:0031975;envelope;9.21740432924359e-30!GO:0031967;organelle envelope;1.69777262082348e-29!GO:0044429;mitochondrial part;1.75571394758682e-29!GO:0006396;RNA processing;3.65632120977578e-29!GO:0019538;protein metabolic process;3.56219848423916e-28!GO:0008380;RNA splicing;1.10277537226677e-26!GO:0005829;cytosol;1.12545664163187e-26!GO:0031981;nuclear lumen;1.79890825141539e-25!GO:0043283;biopolymer metabolic process;8.79285487005415e-25!GO:0044260;cellular macromolecule metabolic process;1.04207900392562e-24!GO:0006397;mRNA processing;4.35680677390597e-24!GO:0044267;cellular protein metabolic process;4.59836353378265e-24!GO:0006886;intracellular protein transport;4.20850513881476e-23!GO:0010467;gene expression;5.35922435214842e-23!GO:0005840;ribosome;2.85359128543662e-22!GO:0006412;translation;1.82305099966821e-21!GO:0051649;establishment of cellular localization;2.8574449699592e-21!GO:0005740;mitochondrial envelope;3.17727507972252e-21!GO:0051641;cellular localization;3.64884869401537e-21!GO:0006996;organelle organization and biogenesis;1.84455972111124e-20!GO:0031966;mitochondrial membrane;2.59359878994034e-20!GO:0019866;organelle inner membrane;7.67203501410436e-20!GO:0009058;biosynthetic process;2.16105549896081e-19!GO:0005743;mitochondrial inner membrane;1.37137937730087e-18!GO:0006119;oxidative phosphorylation;1.6818024857518e-18!GO:0016192;vesicle-mediated transport;1.96853667163755e-18!GO:0005681;spliceosome;2.01691775457383e-18!GO:0065003;macromolecular complex assembly;2.30037085971889e-18!GO:0003735;structural constituent of ribosome;2.28461609860936e-17!GO:0009059;macromolecule biosynthetic process;2.92389713545987e-17!GO:0005654;nucleoplasm;1.15218008766171e-16!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.59753905450256e-16!GO:0022607;cellular component assembly;3.72875255393724e-16!GO:0044249;cellular biosynthetic process;5.52804836434402e-16!GO:0033279;ribosomal subunit;2.17933100511242e-15!GO:0005794;Golgi apparatus;2.59451734587238e-15!GO:0000166;nucleotide binding;2.71457099876759e-15!GO:0044455;mitochondrial membrane part;7.05598587544792e-15!GO:0044451;nucleoplasm part;8.23565854662976e-15!GO:0016874;ligase activity;2.1835830522074e-14!GO:0006512;ubiquitin cycle;4.21950882634417e-14!GO:0006511;ubiquitin-dependent protein catabolic process;4.69108499388327e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;4.69464228059318e-14!GO:0019941;modification-dependent protein catabolic process;7.3800193098455e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.3800193098455e-14!GO:0005746;mitochondrial respiratory chain;7.65080114946746e-14!GO:0044257;cellular protein catabolic process;7.70298158944673e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.87876410396531e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.1686920480134e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.03424704817999e-13!GO:0016462;pyrophosphatase activity;1.16886774249043e-13!GO:0008134;transcription factor binding;1.26005986051121e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.46024717925386e-13!GO:0012505;endomembrane system;2.33890013847051e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.92899615338585e-13!GO:0003954;NADH dehydrogenase activity;2.92899615338585e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.92899615338585e-13!GO:0044265;cellular macromolecule catabolic process;2.92899615338585e-13!GO:0048770;pigment granule;3.43823301981118e-13!GO:0042470;melanosome;3.43823301981118e-13!GO:0006457;protein folding;7.84910480302698e-13!GO:0017111;nucleoside-triphosphatase activity;1.09459715450296e-12!GO:0043285;biopolymer catabolic process;2.70388591436857e-12!GO:0005783;endoplasmic reticulum;3.12804256517843e-12!GO:0016070;RNA metabolic process;3.14900206334919e-12!GO:0044445;cytosolic part;3.73997419749862e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.04682007987316e-11!GO:0043412;biopolymer modification;1.0886386998473e-11!GO:0006605;protein targeting;1.20745715180435e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.49499372220908e-11!GO:0045271;respiratory chain complex I;1.49499372220908e-11!GO:0005747;mitochondrial respiratory chain complex I;1.49499372220908e-11!GO:0022618;protein-RNA complex assembly;2.41202526491768e-11!GO:0043228;non-membrane-bound organelle;2.67909916288501e-11!GO:0043232;intracellular non-membrane-bound organelle;2.67909916288501e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.24291621921091e-11!GO:0042773;ATP synthesis coupled electron transport;3.24291621921091e-11!GO:0031980;mitochondrial lumen;3.44487332641897e-11!GO:0005759;mitochondrial matrix;3.44487332641897e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.57503034354965e-11!GO:0006464;protein modification process;4.96848501937575e-11!GO:0051082;unfolded protein binding;6.14800555176333e-11!GO:0030163;protein catabolic process;6.17783313123384e-11!GO:0044248;cellular catabolic process;1.10246312993881e-10!GO:0005768;endosome;1.59688819066206e-10!GO:0043687;post-translational protein modification;2.47562834758091e-10!GO:0048193;Golgi vesicle transport;3.19833636355099e-10!GO:0016604;nuclear body;3.60966840821441e-10!GO:0009057;macromolecule catabolic process;3.95646016204165e-10!GO:0031982;vesicle;4.10736350953834e-10!GO:0032553;ribonucleotide binding;4.61544600519839e-10!GO:0032555;purine ribonucleotide binding;4.61544600519839e-10!GO:0000502;proteasome complex (sensu Eukaryota);5.48181437385682e-10!GO:0003676;nucleic acid binding;6.08108702360895e-10!GO:0017076;purine nucleotide binding;6.64888203200783e-10!GO:0030695;GTPase regulator activity;9.42438410769982e-10!GO:0031410;cytoplasmic vesicle;1.54758880385656e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.5933636195968e-09!GO:0008565;protein transporter activity;1.68616269519437e-09!GO:0008135;translation factor activity, nucleic acid binding;1.71196852820164e-09!GO:0016607;nuclear speck;2.02761828368696e-09!GO:0031988;membrane-bound vesicle;2.59166929547447e-09!GO:0005730;nucleolus;2.90974224264255e-09!GO:0015935;small ribosomal subunit;4.10921819837343e-09!GO:0008092;cytoskeletal protein binding;4.25269310050904e-09!GO:0005635;nuclear envelope;4.56304195802059e-09!GO:0048523;negative regulation of cellular process;4.70152103418063e-09!GO:0019899;enzyme binding;5.40712196960446e-09!GO:0016023;cytoplasmic membrane-bound vesicle;8.17136525611445e-09!GO:0031252;leading edge;9.63445469335637e-09!GO:0006461;protein complex assembly;1.00148541907101e-08!GO:0012501;programmed cell death;1.07647617229161e-08!GO:0006915;apoptosis;1.11751589644353e-08!GO:0050794;regulation of cellular process;1.11841171299113e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.52526966973868e-08!GO:0000375;RNA splicing, via transesterification reactions;1.52526966973868e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.52526966973868e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.56658817314435e-08!GO:0030036;actin cytoskeleton organization and biogenesis;2.01209328464362e-08!GO:0031965;nuclear membrane;2.45070576040483e-08!GO:0008219;cell death;2.47793100064068e-08!GO:0016265;death;2.47793100064068e-08!GO:0006446;regulation of translational initiation;4.89566118765885e-08!GO:0007264;small GTPase mediated signal transduction;6.18401929198209e-08!GO:0008639;small protein conjugating enzyme activity;6.62147562675079e-08!GO:0044432;endoplasmic reticulum part;8.05494139320107e-08!GO:0019787;small conjugating protein ligase activity;8.39776459714091e-08!GO:0006913;nucleocytoplasmic transport;8.85330904255179e-08!GO:0004842;ubiquitin-protein ligase activity;9.24716585531095e-08!GO:0003712;transcription cofactor activity;1.31649438260774e-07!GO:0016044;membrane organization and biogenesis;1.3414387309844e-07!GO:0051169;nuclear transport;1.48440630070321e-07!GO:0048519;negative regulation of biological process;1.54661167930725e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.57414031983797e-07!GO:0050789;regulation of biological process;1.70543307044962e-07!GO:0003743;translation initiation factor activity;1.85679791757466e-07!GO:0030029;actin filament-based process;1.90772438136057e-07!GO:0051186;cofactor metabolic process;1.98168468695434e-07!GO:0006793;phosphorus metabolic process;2.19333693745112e-07!GO:0006796;phosphate metabolic process;2.19333693745112e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.30571386542213e-07!GO:0005083;small GTPase regulator activity;2.32748696921411e-07!GO:0003924;GTPase activity;2.55473407165118e-07!GO:0006413;translational initiation;2.78370681816292e-07!GO:0015934;large ribosomal subunit;3.36393306412245e-07!GO:0007010;cytoskeleton organization and biogenesis;4.02373883641411e-07!GO:0005525;GTP binding;4.02373883641411e-07!GO:0019829;cation-transporting ATPase activity;4.20420148290213e-07!GO:0016564;transcription repressor activity;4.52378563736355e-07!GO:0016881;acid-amino acid ligase activity;4.89929166858451e-07!GO:0051246;regulation of protein metabolic process;4.98533168760668e-07!GO:0005773;vacuole;7.08878558282031e-07!GO:0006259;DNA metabolic process;7.5090852064361e-07!GO:0009056;catabolic process;1.01229696010456e-06!GO:0015986;ATP synthesis coupled proton transport;1.07630488091285e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.07630488091285e-06!GO:0045786;negative regulation of progression through cell cycle;1.26729956152226e-06!GO:0005770;late endosome;1.33451922102032e-06!GO:0017038;protein import;1.57415503296171e-06!GO:0005769;early endosome;1.84346330059608e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.84346330059608e-06!GO:0015631;tubulin binding;1.93583969397065e-06!GO:0044440;endosomal part;1.9911282460413e-06!GO:0010008;endosome membrane;1.9911282460413e-06!GO:0005761;mitochondrial ribosome;2.30249568527603e-06!GO:0000313;organellar ribosome;2.30249568527603e-06!GO:0009055;electron carrier activity;2.87397415208153e-06!GO:0016568;chromatin modification;3.06589424598981e-06!GO:0006366;transcription from RNA polymerase II promoter;3.48180135392663e-06!GO:0005096;GTPase activator activity;3.88360924319421e-06!GO:0016887;ATPase activity;3.95398463572171e-06!GO:0044453;nuclear membrane part;4.34890760015624e-06!GO:0008047;enzyme activator activity;4.68433332429449e-06!GO:0044431;Golgi apparatus part;4.68433332429449e-06!GO:0032561;guanyl ribonucleotide binding;4.9519522184696e-06!GO:0019001;guanyl nucleotide binding;4.9519522184696e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.98079995728113e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.98079995728113e-06!GO:0000323;lytic vacuole;5.95942228398189e-06!GO:0005764;lysosome;5.95942228398189e-06!GO:0032559;adenyl ribonucleotide binding;7.00095410821997e-06!GO:0005789;endoplasmic reticulum membrane;7.12159508128363e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.53284563963522e-06!GO:0046034;ATP metabolic process;8.36115473728285e-06!GO:0005524;ATP binding;9.02782300215211e-06!GO:0006163;purine nucleotide metabolic process;1.03593776028564e-05!GO:0030554;adenyl nucleotide binding;1.03593776028564e-05!GO:0009150;purine ribonucleotide metabolic process;1.18722765932795e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.21021883663887e-05!GO:0042623;ATPase activity, coupled;1.21592452205519e-05!GO:0009060;aerobic respiration;1.53371970005453e-05!GO:0045333;cellular respiration;1.83849298504589e-05!GO:0006164;purine nucleotide biosynthetic process;2.20208924850711e-05!GO:0006754;ATP biosynthetic process;2.38667936945933e-05!GO:0006753;nucleoside phosphate metabolic process;2.38667936945933e-05!GO:0008287;protein serine/threonine phosphatase complex;2.40247279513692e-05!GO:0048471;perinuclear region of cytoplasm;2.41511298539433e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.43175431737617e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.73204148875489e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.73204148875489e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.83155781268084e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.88515682507837e-05!GO:0009259;ribonucleotide metabolic process;2.9987471285047e-05!GO:0048475;coated membrane;3.4702812933174e-05!GO:0030117;membrane coat;3.4702812933174e-05!GO:0006323;DNA packaging;3.53870217426991e-05!GO:0005793;ER-Golgi intermediate compartment;3.65215688536958e-05!GO:0045259;proton-transporting ATP synthase complex;4.14520974870643e-05!GO:0016310;phosphorylation;4.27899099306153e-05!GO:0006403;RNA localization;4.32703406935835e-05!GO:0006732;coenzyme metabolic process;4.36967500134404e-05!GO:0050657;nucleic acid transport;4.36967500134404e-05!GO:0051236;establishment of RNA localization;4.36967500134404e-05!GO:0050658;RNA transport;4.36967500134404e-05!GO:0008017;microtubule binding;4.57882794991266e-05!GO:0006897;endocytosis;4.65361443786595e-05!GO:0010324;membrane invagination;4.65361443786595e-05!GO:0009141;nucleoside triphosphate metabolic process;5.02807523937542e-05!GO:0005643;nuclear pore;5.02807523937542e-05!GO:0003714;transcription corepressor activity;5.1431510293916e-05!GO:0015630;microtubule cytoskeleton;5.64154164544906e-05!GO:0003779;actin binding;5.64154164544906e-05!GO:0006099;tricarboxylic acid cycle;6.02724121765931e-05!GO:0046356;acetyl-CoA catabolic process;6.02724121765931e-05!GO:0030027;lamellipodium;7.24743876320422e-05!GO:0051128;regulation of cellular component organization and biogenesis;7.97973216142342e-05!GO:0032446;protein modification by small protein conjugation;8.23611819671006e-05!GO:0051170;nuclear import;8.77051645531334e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.48638153702671e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.48638153702671e-05!GO:0000245;spliceosome assembly;9.82775572434347e-05!GO:0009142;nucleoside triphosphate biosynthetic process;0.000101260671009033!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000101260671009033!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000104711539459406!GO:0043069;negative regulation of programmed cell death;0.000107289443315806!GO:0006606;protein import into nucleus;0.000110133415798674!GO:0043066;negative regulation of apoptosis;0.000119049447222257!GO:0007265;Ras protein signal transduction;0.000119323610383173!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000121267668288023!GO:0006613;cotranslational protein targeting to membrane;0.000123388598764638!GO:0000151;ubiquitin ligase complex;0.000124687534352201!GO:0009260;ribonucleotide biosynthetic process;0.000126425075767114!GO:0001726;ruffle;0.000128232018390649!GO:0006888;ER to Golgi vesicle-mediated transport;0.000143277469169646!GO:0009892;negative regulation of metabolic process;0.000144846400013935!GO:0009109;coenzyme catabolic process;0.000149877994241174!GO:0065007;biological regulation;0.000152301455638342!GO:0031072;heat shock protein binding;0.000156374783318864!GO:0005905;coated pit;0.000160485122360142!GO:0016567;protein ubiquitination;0.000160485872422535!GO:0006916;anti-apoptosis;0.00016432598775644!GO:0031901;early endosome membrane;0.000175813647210803!GO:0016197;endosome transport;0.000196029517256822!GO:0030120;vesicle coat;0.000197793164370523!GO:0030662;coated vesicle membrane;0.000197793164370523!GO:0000139;Golgi membrane;0.000198381162220632!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000199678695699056!GO:0051187;cofactor catabolic process;0.000204509462771052!GO:0006084;acetyl-CoA metabolic process;0.00020929680539724!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000209332024656326!GO:0007049;cell cycle;0.000218522894185506!GO:0051726;regulation of cell cycle;0.000230551014526462!GO:0030867;rough endoplasmic reticulum membrane;0.00023822048898559!GO:0000074;regulation of progression through cell cycle;0.00025066690182945!GO:0008654;phospholipid biosynthetic process;0.000258726450659808!GO:0043566;structure-specific DNA binding;0.0002939844760061!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000324629081807146!GO:0051188;cofactor biosynthetic process;0.000326769267384161!GO:0031324;negative regulation of cellular metabolic process;0.000329548323373593!GO:0048468;cell development;0.000349842847517622!GO:0007272;ensheathment of neurons;0.000395675321839267!GO:0008366;axon ensheathment;0.000395675321839267!GO:0030532;small nuclear ribonucleoprotein complex;0.000396260305967926!GO:0045045;secretory pathway;0.000396260305967926!GO:0005798;Golgi-associated vesicle;0.000446789965969181!GO:0005839;proteasome core complex (sensu Eukaryota);0.000453585711644061!GO:0016481;negative regulation of transcription;0.000455350668465898!GO:0043623;cellular protein complex assembly;0.000459609041830745!GO:0000159;protein phosphatase type 2A complex;0.000470177215624815!GO:0051028;mRNA transport;0.00052331022391753!GO:0009966;regulation of signal transduction;0.000586181690289772!GO:0003713;transcription coactivator activity;0.000602712412877333!GO:0042802;identical protein binding;0.000602876446037746!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000638030927630997!GO:0015399;primary active transmembrane transporter activity;0.000638030927630997!GO:0008361;regulation of cell size;0.000638030927630997!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000685957363170132!GO:0004812;aminoacyl-tRNA ligase activity;0.000685957363170132!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000685957363170132!GO:0042981;regulation of apoptosis;0.000691960505646615!GO:0019222;regulation of metabolic process;0.000735587745294736!GO:0016791;phosphoric monoester hydrolase activity;0.000765420546694428!GO:0006402;mRNA catabolic process;0.000787528349537895!GO:0008286;insulin receptor signaling pathway;0.000831588724271414!GO:0005791;rough endoplasmic reticulum;0.000864824387487109!GO:0003724;RNA helicase activity;0.000870873079167152!GO:0005874;microtubule;0.000878205773716337!GO:0043067;regulation of programmed cell death;0.000880413248168772!GO:0019867;outer membrane;0.000902440075755729!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000921280765126149!GO:0006612;protein targeting to membrane;0.000974925791328461!GO:0031968;organelle outer membrane;0.00100124411897882!GO:0003729;mRNA binding;0.00101454317824009!GO:0005741;mitochondrial outer membrane;0.00106718973454478!GO:0065002;intracellular protein transport across a membrane;0.00107103217861251!GO:0043038;amino acid activation;0.00115389083388619!GO:0006418;tRNA aminoacylation for protein translation;0.00115389083388619!GO:0043039;tRNA aminoacylation;0.00115389083388619!GO:0051276;chromosome organization and biogenesis;0.0011694578748417!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00117947542601783!GO:0030133;transport vesicle;0.00118133231959791!GO:0007243;protein kinase cascade;0.00118353566836582!GO:0008026;ATP-dependent helicase activity;0.00118353566836582!GO:0008601;protein phosphatase type 2A regulator activity;0.0012167297694551!GO:0045892;negative regulation of transcription, DNA-dependent;0.00123294719293669!GO:0042254;ribosome biogenesis and assembly;0.00124747351590584!GO:0004386;helicase activity;0.00128220265469452!GO:0001508;regulation of action potential;0.00129994835198525!GO:0051789;response to protein stimulus;0.00129999803812735!GO:0006986;response to unfolded protein;0.00129999803812735!GO:0006650;glycerophospholipid metabolic process;0.00138387283496872!GO:0019902;phosphatase binding;0.00149314996995408!GO:0007242;intracellular signaling cascade;0.00149602423769247!GO:0031902;late endosome membrane;0.00152125798550966!GO:0016049;cell growth;0.00156203537041079!GO:0000902;cell morphogenesis;0.00157535195724066!GO:0032989;cellular structure morphogenesis;0.00157535195724066!GO:0004721;phosphoprotein phosphatase activity;0.00168113600292478!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00173413059339772!GO:0006401;RNA catabolic process;0.00180508525372498!GO:0043492;ATPase activity, coupled to movement of substances;0.00187161752761069!GO:0007019;microtubule depolymerization;0.00191362102767664!GO:0046467;membrane lipid biosynthetic process;0.00201204493343204!GO:0006752;group transfer coenzyme metabolic process;0.00202923234131178!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00203812345273301!GO:0003697;single-stranded DNA binding;0.00206015348667458!GO:0043209;myelin sheath;0.00208674903688278!GO:0051087;chaperone binding;0.00212041585388467!GO:0046930;pore complex;0.00213844668328504!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00219067054945259!GO:0005774;vacuolar membrane;0.00220223221857193!GO:0004298;threonine endopeptidase activity;0.0023361296872196!GO:0006607;NLS-bearing substrate import into nucleus;0.00234081313017475!GO:0005099;Ras GTPase activator activity;0.00234178890949028!GO:0006974;response to DNA damage stimulus;0.00239910613637624!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00239910613637624!GO:0007050;cell cycle arrest;0.00245719487607015!GO:0022890;inorganic cation transmembrane transporter activity;0.00252723451862715!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00263562162487687!GO:0016311;dephosphorylation;0.00267400590393604!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00281242995456606!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00294687552915763!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00318632817913477!GO:0009108;coenzyme biosynthetic process;0.00324143934105181!GO:0030041;actin filament polymerization;0.00328527594644451!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00328848977601493!GO:0008154;actin polymerization and/or depolymerization;0.0034095379937255!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00346863687754501!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00346863687754501!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00346863687754501!GO:0051056;regulation of small GTPase mediated signal transduction;0.00358776814292055!GO:0001666;response to hypoxia;0.00366212822951499!GO:0005085;guanyl-nucleotide exchange factor activity;0.00429997706107575!GO:0005100;Rho GTPase activator activity;0.00447289681893682!GO:0005765;lysosomal membrane;0.00448881373412994!GO:0051920;peroxiredoxin activity;0.0045007072552081!GO:0051168;nuclear export;0.00479313482006713!GO:0004722;protein serine/threonine phosphatase activity;0.00488722139679128!GO:0006643;membrane lipid metabolic process;0.00488722139679128!GO:0019783;small conjugating protein-specific protease activity;0.00500976704683326!GO:0005885;Arp2/3 protein complex;0.00523187896014822!GO:0008139;nuclear localization sequence binding;0.00524389239092653!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00530673081898258!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00547655000588759!GO:0004667;prostaglandin-D synthase activity;0.00547655000588759!GO:0050802;circadian sleep/wake cycle, sleep;0.00547655000588759!GO:0022410;circadian sleep/wake cycle process;0.00547655000588759!GO:0042749;regulation of circadian sleep/wake cycle;0.00547655000588759!GO:0007034;vacuolar transport;0.00550251964712061!GO:0043021;ribonucleoprotein binding;0.00550830461573701!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00561540829888013!GO:0016363;nuclear matrix;0.00567624281895772!GO:0048487;beta-tubulin binding;0.00591439415602128!GO:0050811;GABA receptor binding;0.00591439415602128!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00594346054736699!GO:0004843;ubiquitin-specific protease activity;0.00604097667030724!GO:0031114;regulation of microtubule depolymerization;0.006047553105097!GO:0007026;negative regulation of microtubule depolymerization;0.006047553105097!GO:0032940;secretion by cell;0.00622148972169298!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00660383058835157!GO:0019904;protein domain specific binding;0.00689023019690788!GO:0006470;protein amino acid dephosphorylation;0.00689023019690788!GO:0005938;cell cortex;0.00689023019690788!GO:0007005;mitochondrion organization and biogenesis;0.00697411973782355!GO:0019208;phosphatase regulator activity;0.00710602309198353!GO:0005667;transcription factor complex;0.00811042605919581!GO:0008186;RNA-dependent ATPase activity;0.00820107346957441!GO:0005813;centrosome;0.00825539830540058!GO:0044437;vacuolar part;0.00825634777789343!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00852186926135765!GO:0008610;lipid biosynthetic process;0.00856687534764714!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00868573900112493!GO:0006891;intra-Golgi vesicle-mediated transport;0.00879652942564108!GO:0004221;ubiquitin thiolesterase activity;0.00889714676676429!GO:0048500;signal recognition particle;0.00910703126246367!GO:0006399;tRNA metabolic process;0.00945923844314518!GO:0000059;protein import into nucleus, docking;0.00948587818713084!GO:0005788;endoplasmic reticulum lumen;0.00949967674913948!GO:0030118;clathrin coat;0.00980278204133581!GO:0015980;energy derivation by oxidation of organic compounds;0.010366080482615!GO:0005875;microtubule associated complex;0.0105428239658244!GO:0022402;cell cycle process;0.0112649828988522!GO:0001558;regulation of cell growth;0.0113220433701181!GO:0048154;S100 beta binding;0.0115682482404931!GO:0043488;regulation of mRNA stability;0.0116543272123726!GO:0043487;regulation of RNA stability;0.0116543272123726!GO:0030384;phosphoinositide metabolic process;0.012183131795522!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0125804038983097!GO:0005815;microtubule organizing center;0.0128778289589471!GO:0051427;hormone receptor binding;0.0128994159924005!GO:0009117;nucleotide metabolic process;0.0129412715267506!GO:0043087;regulation of GTPase activity;0.0129437852576957!GO:0046474;glycerophospholipid biosynthetic process;0.0134375728277326!GO:0035035;histone acetyltransferase binding;0.0137078379179744!GO:0043681;protein import into mitochondrion;0.0139046468889427!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0139839623301098!GO:0042552;myelination;0.0143350376640167!GO:0003690;double-stranded DNA binding;0.0149289192275133!GO:0001887;selenium metabolic process;0.0159080738266259!GO:0006364;rRNA processing;0.0163533476925648!GO:0006383;transcription from RNA polymerase III promoter;0.0169893545920375!GO:0030742;GTP-dependent protein binding;0.0171150279657032!GO:0042026;protein refolding;0.0173635805813816!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0175041148495674!GO:0030139;endocytic vesicle;0.0175465343655317!GO:0016563;transcription activator activity;0.0175630722587526!GO:0006810;transport;0.0180490758085766!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0183552629602536!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0185349260683497!GO:0000314;organellar small ribosomal subunit;0.0193791847116204!GO:0005763;mitochondrial small ribosomal subunit;0.0193791847116204!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0198281385830324!GO:0004004;ATP-dependent RNA helicase activity;0.0207933065400793!GO:0005869;dynactin complex;0.0208167169884982!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0208427689357788!GO:0045047;protein targeting to ER;0.0208427689357788!GO:0000118;histone deacetylase complex;0.0208680336994901!GO:0051539;4 iron, 4 sulfur cluster binding;0.0211448239674038!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0211814513630252!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0211814513630252!GO:0009066;aspartate family amino acid metabolic process;0.0215819276932921!GO:0035257;nuclear hormone receptor binding;0.0215819276932921!GO:0019888;protein phosphatase regulator activity;0.0217813447222142!GO:0006644;phospholipid metabolic process;0.0221054207845255!GO:0016072;rRNA metabolic process;0.0221311863309594!GO:0046983;protein dimerization activity;0.0221940253990606!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0229330573580564!GO:0008312;7S RNA binding;0.0229461015730299!GO:0051252;regulation of RNA metabolic process;0.0229899770535845!GO:0031109;microtubule polymerization or depolymerization;0.023161149622414!GO:0007041;lysosomal transport;0.0232108171175697!GO:0030258;lipid modification;0.0234263139112656!GO:0016859;cis-trans isomerase activity;0.0240354073468806!GO:0046489;phosphoinositide biosynthetic process;0.0241082804153687!GO:0005048;signal sequence binding;0.0242162635424486!GO:0007006;mitochondrial membrane organization and biogenesis;0.0244514018838773!GO:0051261;protein depolymerization;0.0246379486623028!GO:0046578;regulation of Ras protein signal transduction;0.0248850863989457!GO:0015682;ferric iron transport;0.0249684276247641!GO:0015091;ferric iron transmembrane transporter activity;0.0249684276247641!GO:0031643;positive regulation of myelination;0.0249684276247641!GO:0033116;ER-Golgi intermediate compartment membrane;0.0250516740146866!GO:0006414;translational elongation;0.0255107470500701!GO:0007266;Rho protein signal transduction;0.0262500946170741!GO:0030132;clathrin coat of coated pit;0.0263893971741722!GO:0033673;negative regulation of kinase activity;0.0263893971741722!GO:0006469;negative regulation of protein kinase activity;0.0263893971741722!GO:0016126;sterol biosynthetic process;0.0263893971741722!GO:0006338;chromatin remodeling;0.0266482232281834!GO:0030880;RNA polymerase complex;0.0270936199054393!GO:0051287;NAD binding;0.0271630435320512!GO:0051540;metal cluster binding;0.0280322365026742!GO:0051536;iron-sulfur cluster binding;0.0280322365026742!GO:0006516;glycoprotein catabolic process;0.0280792472145057!GO:0030663;COPI coated vesicle membrane;0.0287244261576274!GO:0030126;COPI vesicle coat;0.0287244261576274!GO:0019903;protein phosphatase binding;0.0293742399412842!GO:0019911;structural constituent of myelin sheath;0.0299154159354341!GO:0044448;cell cortex part;0.0312176440008133!GO:0051348;negative regulation of transferase activity;0.0312240933193105!GO:0031124;mRNA 3'-end processing;0.0316763696149707!GO:0016491;oxidoreductase activity;0.032630438162421!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0332520073560911!GO:0006611;protein export from nucleus;0.0333112142169226!GO:0006281;DNA repair;0.0339085616017763!GO:0031323;regulation of cellular metabolic process;0.0339085616017763!GO:0046839;phospholipid dephosphorylation;0.0340305537591424!GO:0045947;negative regulation of translational initiation;0.0341138939399863!GO:0030658;transport vesicle membrane;0.0341948954071225!GO:0017166;vinculin binding;0.0344457543292228!GO:0032366;intracellular sterol transport;0.0344457543292228!GO:0032367;intracellular cholesterol transport;0.0344457543292228!GO:0032365;intracellular lipid transport;0.0344457543292228!GO:0050749;apolipoprotein E receptor binding;0.0344655534178058!GO:0006333;chromatin assembly or disassembly;0.0344655534178058!GO:0008234;cysteine-type peptidase activity;0.0346277192057937!GO:0006091;generation of precursor metabolites and energy;0.0349886098036331!GO:0065009;regulation of a molecular function;0.0355541552968705!GO:0022406;membrane docking;0.035864685711934!GO:0048278;vesicle docking;0.035864685711934!GO:0007033;vacuole organization and biogenesis;0.0367735946215138!GO:0006376;mRNA splice site selection;0.0367735946215138!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0367735946215138!GO:0004860;protein kinase inhibitor activity;0.036832379556688!GO:0042158;lipoprotein biosynthetic process;0.037275622286088!GO:0006672;ceramide metabolic process;0.037275622286088!GO:0016790;thiolester hydrolase activity;0.0375516218645642!GO:0016050;vesicle organization and biogenesis;0.0375820907087748!GO:0042578;phosphoric ester hydrolase activity;0.0382486933066801!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0383335793076437!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.038485205733491!GO:0000096;sulfur amino acid metabolic process;0.0385201712236873!GO:0016740;transferase activity;0.0386630156016076!GO:0006378;mRNA polyadenylation;0.0388453358904397!GO:0046519;sphingoid metabolic process;0.0389533055224633!GO:0000209;protein polyubiquitination;0.038989355960489!GO:0040008;regulation of growth;0.0398787193708433!GO:0003702;RNA polymerase II transcription factor activity;0.040021129445234!GO:0006633;fatty acid biosynthetic process;0.0406477598820151!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0409628610832319!GO:0055083;monovalent inorganic anion homeostasis;0.0409628610832319!GO:0055064;chloride ion homeostasis;0.0409628610832319!GO:0030644;cellular chloride ion homeostasis;0.0409628610832319!GO:0005762;mitochondrial large ribosomal subunit;0.0411506801674738!GO:0000315;organellar large ribosomal subunit;0.0411506801674738!GO:0016408;C-acyltransferase activity;0.0415792175972705!GO:0019717;synaptosome;0.0416403926914904!GO:0051179;localization;0.0429010631384222!GO:0006509;membrane protein ectodomain proteolysis;0.0430753281759053!GO:0033619;membrane protein proteolysis;0.0430753281759053!GO:0008270;zinc ion binding;0.0439781808638928!GO:0003711;transcription elongation regulator activity;0.0439781808638928!GO:0016787;hydrolase activity;0.0444941263765612!GO:0008022;protein C-terminus binding;0.0447343012531971!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0459305379767944!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.046030459965978!GO:0009214;cyclic nucleotide catabolic process;0.046030459965978!GO:0006904;vesicle docking during exocytosis;0.0463443060159522!GO:0016579;protein deubiquitination;0.0472773086026933!GO:0009719;response to endogenous stimulus;0.0474479668299737!GO:0006665;sphingolipid metabolic process;0.0475473886845785!GO:0030137;COPI-coated vesicle;0.0480381899474656!GO:0030660;Golgi-associated vesicle membrane;0.0483387191959628!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0484337242012775!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0487236195745576!GO:0005092;GDP-dissociation inhibitor activity;0.049004861022599!GO:0005868;cytoplasmic dynein complex;0.0492524699647542!GO:0051098;regulation of binding;0.0493640737681402!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0493773189089733!GO:0010257;NADH dehydrogenase complex assembly;0.0493773189089733!GO:0033108;mitochondrial respiratory chain complex assembly;0.0493773189089733!GO:0004155;6,7-dihydropteridine reductase activity;0.0495919710384693!GO:0051066;dihydrobiopterin metabolic process;0.0495919710384693!GO:0012506;vesicle membrane;0.0496590180848399
|sample_id=10158
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=substantia nigra
|top_motifs=SOX2:3.85610762072;SOX5:3.52919316876;GATA4:3.3376695912;NFIX:3.13282808162;SOX{8,9,10}:3.1056781248;FOXP1:2.90297030849;NKX3-2:2.50740832489;NR3C1:2.43125481599;AR:2.37718767125;TOPORS:2.36995194371;FOXO1,3,4:2.34961395178;BPTF:2.34746946083;POU6F1:2.24781869623;EP300:2.09220713943;RREB1:2.00946677587;FOXD3:2.00274731465;CUX2:1.97064252262;ZFP161:1.91885672305;ZBTB16:1.82118265612;XBP1:1.77867354126;SOX17:1.7673074702;HOX{A6,A7,B6,B7}:1.75934525525;MYFfamily:1.71503955764;FOXQ1:1.70431603023;TGIF1:1.68745229643;FOXP3:1.68381088216;ZNF384:1.63453235218;FOX{D1,D2}:1.61190673323;MED-1{core}:1.58746424603;RBPJ:1.57169808804;RFX2..5_RFXANK_RFXAP:1.5623922071;HIC1:1.53299892477;NHLH1,2:1.51787911681;REST:1.50033799233;MYBL2:1.49127210415;PAX6:1.48710673602;ATF2:1.48019991835;PATZ1:1.47188769689;GTF2I:1.4690835201;ARID5B:1.45841341072;LMO2:1.36103851834;PITX1..3:1.35792383885;ZBTB6:1.35454289761;TLX2:1.33345833319;FOX{I1,J2}:1.32450922202;SREBF1,2:1.31788841255;PRDM1:1.25226724706;MAFB:1.24263723933;NKX6-1,2:1.21625505036;OCT4_SOX2{dimer}:1.21577934921;HBP1_HMGB_SSRP1_UBTF:1.21346514076;MAZ:1.19010021713;NKX2-2,8:1.17528160805;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.17219668827;PAX4:1.16819211582;TFAP2B:1.16194190178;SP1:1.14466985464;STAT2,4,6:1.13154898652;ZNF143:1.12911893637;FOX{F1,F2,J1}:1.10381225965;MTF1:1.08547359472;T:1.07537280138;IKZF2:1.07210221904;NRF1:1.05791142538;MZF1:1.03250308516;STAT1,3:1.03072699151;TLX1..3_NFIC{dimer}:1.00707419614;MTE{core}:0.990833678447;TFAP2{A,C}:0.975445221437;DBP:0.964315897569;SPZ1:0.915359020717;POU3F1..4:0.911583622974;FOXM1:0.90369164041;SMAD1..7,9:0.884129477308;KLF4:0.845458713952;PRRX1,2:0.7773404609;EGR1..3:0.773052348494;PDX1:0.749053239153;ALX1:0.659223406827;IRF7:0.650721544067;NANOG:0.648598870388;ZNF423:0.625970247681;LEF1_TCF7_TCF7L1,2:0.622803152904;JUN:0.585964328607;BREu{core}:0.573305457909;GTF2A1,2:0.565324593553;POU5F1:0.564466362662;CDX1,2,4:0.563228378254;RFX1:0.491712982251;ZIC1..3:0.489442951937;ONECUT1,2:0.461784764276;EBF1:0.399241987057;PAX5:0.39400407068;HSF1,2:0.371058686067;AIRE:0.340646446486;FOXA2:0.330600582191;CREB1:0.325212787347;GFI1B:0.29854600587;HOX{A4,D4}:0.296191377074;TFCP2:0.286516448438;NFY{A,B,C}:0.279271378369;NKX3-1:0.276575710662;GCM1,2:0.256157294486;IRF1,2:0.217058667585;CDC5L:0.206926437157;HMX1:0.196338842965;TEF:0.191608072079;ESRRA:0.17342539056;CRX:0.164549862054;YY1:0.114652621232;NFATC1..3:0.102151106446;GZF1:0.101150971989;POU1F1:0.0981228676204;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0654976296068;HOXA9_MEIS1:0.0643161058587;NKX2-1,4:0.0443017235849;HAND1,2:0.0416379795464;TFDP1:0.0338778596889;EVI1:-0.0312060859588;FOXL1:-0.034686622407;ZNF238:-0.0569428730272;HMGA1,2:-0.0920766921408;PAX2:-0.100294688744;GFI1:-0.104483097525;NFIL3:-0.120247967432;HNF4A_NR2F1,2:-0.121751696768;ALX4:-0.155827282718;SPI1:-0.187894092122;ATF5_CREB3:-0.188287858187;VSX1,2:-0.194394786034;DMAP1_NCOR{1,2}_SMARC:-0.196071961855;RXR{A,B,G}:-0.222169105319;NR5A1,2:-0.224164160933;RORA:-0.245389717941;UFEwm:-0.247665867583;MEF2{A,B,C,D}:-0.253192300289;ETS1,2:-0.259164505615;TFAP4:-0.265973072494;HIF1A:-0.277966266255;SPIB:-0.279143161425;FOXN1:-0.332441719492;ELF1,2,4:-0.370526473009;NANOG{mouse}:-0.385895954174;XCPE1{core}:-0.396851247441;PBX1:-0.399100703423;AHR_ARNT_ARNT2:-0.417839128657;CEBPA,B_DDIT3:-0.417976243416;bHLH_family:-0.421041005946;NFE2L2:-0.43774257864;IKZF1:-0.461429646369;TP53:-0.473600879654;LHX3,4:-0.487518845126;ZEB1:-0.501220822292;GATA6:-0.536127539638;ATF6:-0.548015927352;NR6A1:-0.56659099454;NFE2L1:-0.596463241955;ATF4:-0.607428104506;MYOD1:-0.674867492033;NFE2:-0.676095193845;ELK1,4_GABP{A,B1}:-0.694249413844;HLF:-0.729733582088;TEAD1:-0.745723422309;TAL1_TCF{3,4,12}:-0.75371486531;NKX2-3_NKX2-5:-0.764649717003;TBP:-0.78291950726;NR1H4:-0.844416624045;HNF1A:-0.849791719591;SNAI1..3:-0.893344943865;ADNP_IRX_SIX_ZHX:-0.899238172319;TBX4,5:-0.916123236367;NFKB1_REL_RELA:-0.982473421663;FOSL2:-1.01780430671;E2F1..5:-1.02007202174;MYB:-1.03332543707;RUNX1..3:-1.03994272886;BACH2:-1.07259477106;SRF:-1.07337765897;FOS_FOS{B,L1}_JUN{B,D}:-1.09896313639;STAT5{A,B}:-1.3213587824;PAX1,9:-1.37313906692;ESR1:-1.37539714085;PAX8:-1.41716830294;POU2F1..3:-1.44349690846;RXRA_VDR{dimer}:-1.48908057489;HES1:-1.51626896398;PAX3,7:-1.58444353231;ZNF148:-1.61177514066;GLI1..3:-1.63986461519;EN1,2:-1.69881416792;PPARG:-2.39880001041;HOX{A5,B5}:-2.98038280024
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10158-103A5;search_select_hide=table117:FF:10158-103A5
}}
}}

Latest revision as of 12:23, 3 June 2020

Name:substantia nigra, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12318
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesubstantia nigra
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005263
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12318 CAGE DRX008735 DRR009607
Accession ID Hg19

Library idBAMCTSS
CNhs12318 DRZ001032 DRZ002417
Accession ID Hg38

Library idBAMCTSS
CNhs12318 DRZ012382 DRZ013767
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10029downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005263
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10096 RNA-Seq DRX057153 DRR062912
Accession ID Hg19

Library idBAMCTSS
RDhi10096 DRZ007988


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.0582
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.838
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.00209
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.3
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0582
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.109
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.109
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0582
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.155
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0582
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.109
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.0582
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.435
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0582
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0582
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.231
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.576
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.235
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0582
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.171
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.155
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0586
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.925
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0582
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.316
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.0582
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0582
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.109
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.109
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0582
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.109
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.109
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0268
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.435
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.109
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.109
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.562
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0582
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.399
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.048
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0582
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.36
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.368
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.109
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.109
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.0582
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.79
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.134
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.235
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.109
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0156
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12318

Jaspar motifP-value
MA0002.20.0601
MA0003.10.145
MA0004.10.375
MA0006.10.445
MA0007.10.76
MA0009.10.171
MA0014.10.801
MA0017.10.00623
MA0018.20.831
MA0019.10.835
MA0024.10.61
MA0025.10.0894
MA0027.10.715
MA0028.10.0654
MA0029.10.0725
MA0030.10.072
MA0031.10.0106
MA0035.20.0267
MA0038.10.47
MA0039.20.207
MA0040.10.863
MA0041.10.38
MA0042.10.774
MA0043.10.585
MA0046.10.00113
MA0047.20.897
MA0048.10.196
MA0050.10.159
MA0051.10.18
MA0052.10.24
MA0055.10.0047
MA0057.10.76
MA0058.10.609
MA0059.10.152
MA0060.10.605
MA0061.17.10675e-4
MA0062.20.00275
MA0065.20.00385
MA0066.10.0108
MA0067.10.703
MA0068.10.949
MA0069.10.987
MA0070.10.687
MA0071.10.0302
MA0072.10.389
MA0073.10.606
MA0074.10.258
MA0076.10.116
MA0077.16.31101e-4
MA0078.10.535
MA0079.20.799
MA0080.24.69804e-5
MA0081.10.0315
MA0083.10.0102
MA0084.10.0755
MA0087.10.33
MA0088.10.654
MA0090.10.259
MA0091.10.752
MA0092.10.215
MA0093.10.479
MA0099.23.65352e-25
MA0100.10.392
MA0101.13.92553e-4
MA0102.20.323
MA0103.10.0153
MA0104.20.438
MA0105.13.56372e-5
MA0106.10.0217
MA0107.11.60214e-4
MA0108.20.0578
MA0111.10.878
MA0112.20.00173
MA0113.10.584
MA0114.10.0148
MA0115.10.6
MA0116.10.00129
MA0117.10.64
MA0119.10.539
MA0122.10.627
MA0124.10.991
MA0125.10.64
MA0131.10.684
MA0135.10.469
MA0136.14.39472e-8
MA0137.20.0976
MA0138.20.843
MA0139.10.552
MA0140.10.105
MA0141.10.00524
MA0142.10.437
MA0143.10.0196
MA0144.10.86
MA0145.10.416
MA0146.10.0765
MA0147.10.197
MA0148.10.86
MA0149.10.0147
MA0150.17.60868e-5
MA0152.10.41
MA0153.10.111
MA0154.10.0476
MA0155.10.514
MA0156.14.85463e-6
MA0157.10.146
MA0159.10.0279
MA0160.10.0351
MA0162.10.193
MA0163.13.34007e-8
MA0164.10.688
MA0258.10.0483
MA0259.10.773



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12318

Novel motifP-value
10.164
100.101
1000.725
1010.385
1020.953
1030.0171
1040.0981
1050.0978
1060.0104
1070.149
1080.893
1090.00121
110.0139
1100.0653
1110.5
1120.257
1130.0688
1140.276
1150.892
1160.411
1170.0324
1180.413
1190.644
120.211
1200.166
1210.467
1220.737
1230.0219
1240.526
1250.849
1260.126
1270.3
1280.127
1290.427
130.0091
1300.112
1310.021
1320.261
1330.192
1340.383
1350.265
1360.00209
1370.84
1380.961
1390.442
140.928
1400.797
1410.447
1420.406
1430.0238
1440.53
1450.596
1460.567
1470.773
1480.859
1490.125
150.0656
1500.0729
1510.933
1520.0746
1530.905
1540.182
1550.921
1560.403
1570.31
1580.0858
1590.00307
160.0297
1600.224
1610.301
1620.703
1630.578
1640.0323
1650.197
1660.739
1670.485
1680.89
1690.0579
170.0701
180.0376
190.479
20.781
200.321
210.058
220.276
230.324
240.0435
250.587
260.0635
270.336
280.921
290.00251
30.143
300.499
310.975
320.00856
330.0759
340.692
350.539
360.424
370.054
380.682
390.314
40.863
400.166
410.296
420.416
430.175
440.0848
450.59
460.0302
470.134
480.133
490.695
50.788
500.687
510.308
520.626
530.168
540.752
550.892
560.729
570.619
580.431
590.0481
60.494
600.115
610.237
620.191
630.666
640.132
650.355
660.0634
670.498
680.337
690.471
70.142
700.19
710.0122
720.159
730.0422
740.623
750.0218
760.342
770.123
780.00393
790.54
80.0669
800.325
810.632
820.789
830.0853
840.471
850.848
860.197
872.19812e-4
880.562
890.0771
90.265
900.366
910.677
920.573
930.884
940.273
950.02
960.547
970.771
980.237
990.566



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12318


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002038 (substantia nigra)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0009661 (midbrain nucleus)
0000125 (neural nucleus)
0002950 (regional part of midbrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0001891 (midbrain)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010158 (human substantia nigra - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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